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Genes within 1Mb (chr1:62893145:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -700266 sc-eQTL 3.98e-01 0.0655 0.0773 0.62 B L1
ENSG00000088035 ALG6 -474430 sc-eQTL 5.73e-01 0.0452 0.0802 0.62 B L1
ENSG00000116641 DOCK7 204759 sc-eQTL 3.84e-01 -0.0699 0.0801 0.62 B L1
ENSG00000125703 ATG4C 109013 sc-eQTL 3.04e-01 0.0574 0.0556 0.62 B L1
ENSG00000142856 ITGB3BP -700576 sc-eQTL 2.06e-01 -0.112 0.0884 0.62 B L1
ENSG00000162607 USP1 456848 sc-eQTL 9.34e-01 -0.00642 0.0771 0.62 B L1
ENSG00000203965 EFCAB7 -630227 sc-eQTL 5.74e-02 -0.172 0.0902 0.62 B L1
ENSG00000079739 PGM1 -700266 sc-eQTL 9.93e-01 -0.000553 0.0661 0.62 CD4T L1
ENSG00000088035 ALG6 -474430 sc-eQTL 2.59e-01 -0.0823 0.0727 0.62 CD4T L1
ENSG00000116641 DOCK7 204759 sc-eQTL 9.32e-01 0.00635 0.0739 0.62 CD4T L1
ENSG00000125703 ATG4C 109013 sc-eQTL 7.79e-01 -0.0168 0.0596 0.62 CD4T L1
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.86e-01 0.0122 0.0847 0.62 CD4T L1
ENSG00000162607 USP1 456848 sc-eQTL 2.78e-01 0.0628 0.0577 0.62 CD4T L1
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.25e-01 0.116 0.0756 0.62 CD4T L1
ENSG00000079739 PGM1 -700266 sc-eQTL 5.80e-01 -0.0405 0.0731 0.62 CD8T L1
ENSG00000088035 ALG6 -474430 sc-eQTL 6.31e-01 -0.0388 0.0806 0.62 CD8T L1
ENSG00000116641 DOCK7 204759 sc-eQTL 4.97e-01 -0.0556 0.0816 0.62 CD8T L1
ENSG00000125703 ATG4C 109013 sc-eQTL 3.89e-02 0.16 0.0768 0.62 CD8T L1
ENSG00000142856 ITGB3BP -700576 sc-eQTL 6.46e-01 0.0399 0.0868 0.62 CD8T L1
ENSG00000162607 USP1 456848 sc-eQTL 8.63e-01 -0.0117 0.0676 0.62 CD8T L1
ENSG00000203965 EFCAB7 -630227 sc-eQTL 4.75e-01 0.0619 0.0864 0.62 CD8T L1
ENSG00000079739 PGM1 -700266 sc-eQTL 6.84e-01 -0.0329 0.0807 0.613 DC L1
ENSG00000088035 ALG6 -474430 sc-eQTL 6.36e-01 0.0395 0.0832 0.613 DC L1
ENSG00000116641 DOCK7 204759 sc-eQTL 9.81e-01 -0.00204 0.0854 0.613 DC L1
ENSG00000125703 ATG4C 109013 sc-eQTL 6.07e-01 -0.0343 0.0668 0.613 DC L1
ENSG00000142856 ITGB3BP -700576 sc-eQTL 9.37e-01 -0.00743 0.0934 0.613 DC L1
ENSG00000162607 USP1 456848 sc-eQTL 7.18e-01 0.0294 0.0815 0.613 DC L1
ENSG00000203965 EFCAB7 -630227 sc-eQTL 4.05e-01 -0.0676 0.0811 0.613 DC L1
ENSG00000079739 PGM1 -700266 sc-eQTL 3.06e-01 0.0814 0.0794 0.62 Mono L1
ENSG00000088035 ALG6 -474430 sc-eQTL 1.06e-01 -0.134 0.0826 0.62 Mono L1
ENSG00000116641 DOCK7 204759 sc-eQTL 5.13e-01 0.0526 0.0803 0.62 Mono L1
ENSG00000125703 ATG4C 109013 sc-eQTL 4.99e-01 0.0367 0.0542 0.62 Mono L1
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.28e-01 0.0187 0.0858 0.62 Mono L1
ENSG00000162607 USP1 456848 sc-eQTL 5.56e-01 -0.0415 0.0704 0.62 Mono L1
ENSG00000240563 L1TD1 698296 sc-eQTL 8.56e-01 -0.012 0.0658 0.62 Mono L1
ENSG00000079739 PGM1 -700266 sc-eQTL 6.10e-01 0.035 0.0684 0.618 NK L1
ENSG00000088035 ALG6 -474430 sc-eQTL 7.24e-01 0.0284 0.0802 0.618 NK L1
ENSG00000116641 DOCK7 204759 sc-eQTL 3.24e-01 0.0651 0.0659 0.618 NK L1
ENSG00000125703 ATG4C 109013 sc-eQTL 6.90e-01 0.0284 0.071 0.618 NK L1
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.91e-01 -0.0121 0.0882 0.618 NK L1
ENSG00000162607 USP1 456848 sc-eQTL 6.37e-01 0.0373 0.0788 0.618 NK L1
ENSG00000203965 EFCAB7 -630227 sc-eQTL 4.02e-01 -0.0804 0.0956 0.618 NK L1
ENSG00000079739 PGM1 -700266 sc-eQTL 2.53e-01 -0.0882 0.077 0.62 Other_T L1
ENSG00000088035 ALG6 -474430 sc-eQTL 2.19e-01 0.0954 0.0773 0.62 Other_T L1
ENSG00000116641 DOCK7 204759 sc-eQTL 7.41e-01 0.0262 0.0792 0.62 Other_T L1
ENSG00000125703 ATG4C 109013 sc-eQTL 1.07e-02 0.174 0.0675 0.62 Other_T L1
ENSG00000142856 ITGB3BP -700576 sc-eQTL 1.34e-01 -0.0909 0.0605 0.62 Other_T L1
ENSG00000162607 USP1 456848 sc-eQTL 9.45e-01 -0.00364 0.0527 0.62 Other_T L1
ENSG00000203965 EFCAB7 -630227 sc-eQTL 8.93e-01 0.0127 0.0939 0.62 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -700266 sc-eQTL 4.34e-01 -0.0835 0.106 0.625 B_Activated L2
ENSG00000088035 ALG6 -474430 sc-eQTL 3.75e-01 -0.0906 0.102 0.625 B_Activated L2
ENSG00000116641 DOCK7 204759 sc-eQTL 9.52e-01 0.00577 0.0951 0.625 B_Activated L2
ENSG00000125703 ATG4C 109013 sc-eQTL 8.76e-02 -0.17 0.0991 0.625 B_Activated L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 4.07e-02 -0.199 0.0965 0.625 B_Activated L2
ENSG00000162607 USP1 456848 sc-eQTL 7.41e-01 -0.035 0.106 0.625 B_Activated L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 7.24e-01 -0.0327 0.0924 0.625 B_Activated L2
ENSG00000079739 PGM1 -700266 sc-eQTL 8.70e-01 -0.0155 0.0948 0.62 B_Intermediate L2
ENSG00000088035 ALG6 -474430 sc-eQTL 9.04e-01 -0.0116 0.0963 0.62 B_Intermediate L2
ENSG00000116641 DOCK7 204759 sc-eQTL 7.78e-01 -0.026 0.0919 0.62 B_Intermediate L2
ENSG00000125703 ATG4C 109013 sc-eQTL 9.03e-01 -0.00952 0.0778 0.62 B_Intermediate L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 6.73e-01 0.0391 0.0927 0.62 B_Intermediate L2
ENSG00000162607 USP1 456848 sc-eQTL 3.85e-01 0.0804 0.0924 0.62 B_Intermediate L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.63e-01 -0.128 0.0914 0.62 B_Intermediate L2
ENSG00000079739 PGM1 -700266 sc-eQTL 7.57e-01 -0.0284 0.0917 0.619 B_Memory L2
ENSG00000088035 ALG6 -474430 sc-eQTL 2.06e-01 -0.118 0.0929 0.619 B_Memory L2
ENSG00000116641 DOCK7 204759 sc-eQTL 6.07e-01 0.0451 0.0874 0.619 B_Memory L2
ENSG00000125703 ATG4C 109013 sc-eQTL 8.55e-01 -0.0152 0.0832 0.619 B_Memory L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 9.61e-01 -0.00463 0.0952 0.619 B_Memory L2
ENSG00000162607 USP1 456848 sc-eQTL 1.07e-01 0.154 0.0954 0.619 B_Memory L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.53e-01 -0.135 0.094 0.619 B_Memory L2
ENSG00000079739 PGM1 -700266 sc-eQTL 6.98e-01 0.0362 0.0931 0.62 B_Naive1 L2
ENSG00000088035 ALG6 -474430 sc-eQTL 3.06e-01 0.0956 0.0932 0.62 B_Naive1 L2
ENSG00000116641 DOCK7 204759 sc-eQTL 2.80e-01 -0.0968 0.0893 0.62 B_Naive1 L2
ENSG00000125703 ATG4C 109013 sc-eQTL 5.04e-02 0.135 0.0684 0.62 B_Naive1 L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 3.41e-01 -0.0872 0.0913 0.62 B_Naive1 L2
ENSG00000162607 USP1 456848 sc-eQTL 8.59e-02 -0.138 0.0799 0.62 B_Naive1 L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 5.94e-02 -0.184 0.0968 0.62 B_Naive1 L2
ENSG00000079739 PGM1 -700266 sc-eQTL 6.87e-01 0.037 0.0918 0.62 B_Naive2 L2
ENSG00000088035 ALG6 -474430 sc-eQTL 9.27e-01 0.00881 0.0957 0.62 B_Naive2 L2
ENSG00000116641 DOCK7 204759 sc-eQTL 7.28e-01 -0.0321 0.092 0.62 B_Naive2 L2
ENSG00000125703 ATG4C 109013 sc-eQTL 9.18e-01 0.0091 0.0886 0.62 B_Naive2 L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.08e-01 -0.0234 0.0961 0.62 B_Naive2 L2
ENSG00000162607 USP1 456848 sc-eQTL 7.91e-01 -0.0243 0.0915 0.62 B_Naive2 L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 8.94e-01 0.0127 0.0956 0.62 B_Naive2 L2
ENSG00000079739 PGM1 -700266 sc-eQTL 1.04e-02 -0.237 0.0917 0.611 CD4_CTL L2
ENSG00000088035 ALG6 -474430 sc-eQTL 8.17e-01 0.0228 0.0985 0.611 CD4_CTL L2
ENSG00000116641 DOCK7 204759 sc-eQTL 2.57e-01 0.0976 0.0859 0.611 CD4_CTL L2
ENSG00000125703 ATG4C 109013 sc-eQTL 7.35e-01 0.0302 0.0891 0.611 CD4_CTL L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.69e-01 0.0158 0.0953 0.611 CD4_CTL L2
ENSG00000162607 USP1 456848 sc-eQTL 8.12e-01 0.0216 0.0907 0.611 CD4_CTL L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.75e-01 -0.123 0.0902 0.611 CD4_CTL L2
ENSG00000079739 PGM1 -700266 sc-eQTL 7.27e-01 0.026 0.0741 0.62 CD4_Naive L2
ENSG00000088035 ALG6 -474430 sc-eQTL 6.06e-01 -0.0415 0.0805 0.62 CD4_Naive L2
ENSG00000116641 DOCK7 204759 sc-eQTL 6.65e-01 -0.0343 0.0791 0.62 CD4_Naive L2
ENSG00000125703 ATG4C 109013 sc-eQTL 9.88e-01 0.00108 0.07 0.62 CD4_Naive L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 6.04e-01 -0.0444 0.0855 0.62 CD4_Naive L2
ENSG00000162607 USP1 456848 sc-eQTL 2.83e-01 0.0701 0.0652 0.62 CD4_Naive L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 5.60e-02 0.162 0.0842 0.62 CD4_Naive L2
ENSG00000079739 PGM1 -700266 sc-eQTL 8.36e-01 0.016 0.0775 0.62 CD4_TCM L2
ENSG00000088035 ALG6 -474430 sc-eQTL 1.95e-01 -0.116 0.0896 0.62 CD4_TCM L2
ENSG00000116641 DOCK7 204759 sc-eQTL 6.33e-01 -0.038 0.0797 0.62 CD4_TCM L2
ENSG00000125703 ATG4C 109013 sc-eQTL 9.14e-01 -0.00835 0.0776 0.62 CD4_TCM L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 2.78e-01 0.0992 0.0912 0.62 CD4_TCM L2
ENSG00000162607 USP1 456848 sc-eQTL 3.39e-01 0.0717 0.0748 0.62 CD4_TCM L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.87e-01 0.117 0.0882 0.62 CD4_TCM L2
ENSG00000079739 PGM1 -700266 sc-eQTL 7.76e-01 -0.026 0.0914 0.62 CD4_TEM L2
ENSG00000088035 ALG6 -474430 sc-eQTL 1.91e-01 -0.12 0.0915 0.62 CD4_TEM L2
ENSG00000116641 DOCK7 204759 sc-eQTL 8.95e-01 -0.0118 0.0895 0.62 CD4_TEM L2
ENSG00000125703 ATG4C 109013 sc-eQTL 6.58e-01 -0.0385 0.0869 0.62 CD4_TEM L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 9.60e-01 0.00448 0.0898 0.62 CD4_TEM L2
ENSG00000162607 USP1 456848 sc-eQTL 6.82e-01 0.0349 0.085 0.62 CD4_TEM L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.02e-01 -0.152 0.0924 0.62 CD4_TEM L2
ENSG00000079739 PGM1 -700266 sc-eQTL 6.32e-01 0.0404 0.0842 0.62 CD8_CTL L2
ENSG00000088035 ALG6 -474430 sc-eQTL 5.37e-01 -0.0553 0.0895 0.62 CD8_CTL L2
ENSG00000116641 DOCK7 204759 sc-eQTL 4.24e-01 -0.068 0.0849 0.62 CD8_CTL L2
ENSG00000125703 ATG4C 109013 sc-eQTL 1.98e-02 0.21 0.0893 0.62 CD8_CTL L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 4.89e-01 -0.0651 0.094 0.62 CD8_CTL L2
ENSG00000162607 USP1 456848 sc-eQTL 5.53e-01 0.05 0.0842 0.62 CD8_CTL L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 2.32e-01 0.115 0.0961 0.62 CD8_CTL L2
ENSG00000079739 PGM1 -700266 sc-eQTL 9.41e-01 -0.00631 0.0851 0.62 CD8_Naive L2
ENSG00000088035 ALG6 -474430 sc-eQTL 5.25e-01 -0.056 0.088 0.62 CD8_Naive L2
ENSG00000116641 DOCK7 204759 sc-eQTL 1.68e-01 -0.125 0.0906 0.62 CD8_Naive L2
ENSG00000125703 ATG4C 109013 sc-eQTL 2.24e-02 0.199 0.0863 0.62 CD8_Naive L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.16e-01 0.0207 0.0885 0.62 CD8_Naive L2
ENSG00000162607 USP1 456848 sc-eQTL 9.48e-01 -0.00489 0.0748 0.62 CD8_Naive L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 7.58e-01 0.0258 0.0834 0.62 CD8_Naive L2
ENSG00000079739 PGM1 -700266 sc-eQTL 5.21e-02 -0.182 0.093 0.62 CD8_TCM L2
ENSG00000088035 ALG6 -474430 sc-eQTL 2.10e-01 0.119 0.0947 0.62 CD8_TCM L2
ENSG00000116641 DOCK7 204759 sc-eQTL 5.61e-01 0.0539 0.0927 0.62 CD8_TCM L2
ENSG00000125703 ATG4C 109013 sc-eQTL 2.78e-01 -0.103 0.0946 0.62 CD8_TCM L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.64e-01 0.0158 0.0922 0.62 CD8_TCM L2
ENSG00000162607 USP1 456848 sc-eQTL 8.49e-01 0.0169 0.0887 0.62 CD8_TCM L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.46e-03 0.296 0.0915 0.62 CD8_TCM L2
ENSG00000079739 PGM1 -700266 sc-eQTL 5.61e-01 0.0572 0.0982 0.63 CD8_TEM L2
ENSG00000088035 ALG6 -474430 sc-eQTL 1.12e-01 0.157 0.0981 0.63 CD8_TEM L2
ENSG00000116641 DOCK7 204759 sc-eQTL 5.05e-01 0.0638 0.0956 0.63 CD8_TEM L2
ENSG00000125703 ATG4C 109013 sc-eQTL 6.23e-02 0.171 0.0912 0.63 CD8_TEM L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 9.07e-02 0.168 0.0988 0.63 CD8_TEM L2
ENSG00000162607 USP1 456848 sc-eQTL 1.23e-01 -0.146 0.0944 0.63 CD8_TEM L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 5.23e-01 -0.0617 0.0964 0.63 CD8_TEM L2
ENSG00000079739 PGM1 -700266 sc-eQTL 6.66e-02 -0.163 0.0882 0.619 MAIT L2
ENSG00000088035 ALG6 -474430 sc-eQTL 4.37e-01 0.0685 0.0879 0.619 MAIT L2
ENSG00000116641 DOCK7 204759 sc-eQTL 9.73e-01 0.00284 0.0844 0.619 MAIT L2
ENSG00000125703 ATG4C 109013 sc-eQTL 8.72e-02 0.152 0.0884 0.619 MAIT L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 3.68e-01 -0.0803 0.089 0.619 MAIT L2
ENSG00000162607 USP1 456848 sc-eQTL 5.34e-01 -0.0551 0.0884 0.619 MAIT L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 6.20e-01 0.0456 0.0917 0.619 MAIT L2
ENSG00000079739 PGM1 -700266 sc-eQTL 9.34e-01 -0.00738 0.0885 0.618 NK_CD56bright L2
ENSG00000088035 ALG6 -474430 sc-eQTL 5.48e-01 -0.0546 0.0906 0.618 NK_CD56bright L2
ENSG00000116641 DOCK7 204759 sc-eQTL 1.48e-02 -0.19 0.0775 0.618 NK_CD56bright L2
ENSG00000125703 ATG4C 109013 sc-eQTL 8.70e-02 -0.15 0.0872 0.618 NK_CD56bright L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 6.92e-01 -0.0363 0.0914 0.618 NK_CD56bright L2
ENSG00000162607 USP1 456848 sc-eQTL 7.66e-01 -0.0281 0.0943 0.618 NK_CD56bright L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.52e-01 -0.129 0.0897 0.618 NK_CD56bright L2
ENSG00000079739 PGM1 -700266 sc-eQTL 3.36e-01 -0.0681 0.0707 0.616 NK_CD56dim L2
ENSG00000088035 ALG6 -474430 sc-eQTL 8.84e-01 -0.0131 0.0898 0.616 NK_CD56dim L2
ENSG00000116641 DOCK7 204759 sc-eQTL 1.97e-01 0.101 0.0779 0.616 NK_CD56dim L2
ENSG00000125703 ATG4C 109013 sc-eQTL 8.71e-01 -0.0129 0.0794 0.616 NK_CD56dim L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 7.16e-01 -0.0329 0.0903 0.616 NK_CD56dim L2
ENSG00000162607 USP1 456848 sc-eQTL 5.83e-01 0.0481 0.0876 0.616 NK_CD56dim L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 6.88e-01 -0.0393 0.0976 0.616 NK_CD56dim L2
ENSG00000079739 PGM1 -700266 sc-eQTL 3.89e-01 0.0831 0.0963 0.621 NK_HLA L2
ENSG00000088035 ALG6 -474430 sc-eQTL 5.87e-01 -0.0544 0.1 0.621 NK_HLA L2
ENSG00000116641 DOCK7 204759 sc-eQTL 5.41e-01 0.0468 0.0764 0.621 NK_HLA L2
ENSG00000125703 ATG4C 109013 sc-eQTL 3.60e-02 0.186 0.088 0.621 NK_HLA L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 6.20e-01 0.0464 0.0934 0.621 NK_HLA L2
ENSG00000162607 USP1 456848 sc-eQTL 6.20e-01 0.0485 0.0977 0.621 NK_HLA L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 6.43e-01 0.0412 0.0889 0.621 NK_HLA L2
ENSG00000079739 PGM1 -700266 sc-eQTL 4.47e-01 0.0591 0.0776 0.616 NK_cytokine L2
ENSG00000088035 ALG6 -474430 sc-eQTL 3.96e-02 0.18 0.0869 0.616 NK_cytokine L2
ENSG00000116641 DOCK7 204759 sc-eQTL 5.46e-01 0.0491 0.0812 0.616 NK_cytokine L2
ENSG00000125703 ATG4C 109013 sc-eQTL 5.28e-01 0.0525 0.0831 0.616 NK_cytokine L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 6.71e-01 -0.0366 0.0861 0.616 NK_cytokine L2
ENSG00000162607 USP1 456848 sc-eQTL 5.56e-01 -0.0534 0.0905 0.616 NK_cytokine L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 9.12e-01 0.0102 0.0918 0.616 NK_cytokine L2
ENSG00000079739 PGM1 -700266 sc-eQTL 8.44e-01 -0.0206 0.104 0.63 PB L2
ENSG00000088035 ALG6 -474430 sc-eQTL 8.03e-01 -0.0274 0.11 0.63 PB L2
ENSG00000116641 DOCK7 204759 sc-eQTL 4.52e-01 0.0882 0.117 0.63 PB L2
ENSG00000125703 ATG4C 109013 sc-eQTL 5.37e-01 0.0631 0.102 0.63 PB L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 7.50e-01 -0.0325 0.102 0.63 PB L2
ENSG00000162607 USP1 456848 sc-eQTL 9.13e-01 0.0111 0.102 0.63 PB L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 4.30e-01 0.0884 0.112 0.63 PB L2
ENSG00000079739 PGM1 -700266 sc-eQTL 3.02e-01 0.0876 0.0847 0.622 Pro_T L2
ENSG00000088035 ALG6 -474430 sc-eQTL 7.66e-01 -0.0257 0.0863 0.622 Pro_T L2
ENSG00000116641 DOCK7 204759 sc-eQTL 6.17e-01 0.0434 0.0866 0.622 Pro_T L2
ENSG00000125703 ATG4C 109013 sc-eQTL 4.86e-01 0.0529 0.0758 0.622 Pro_T L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 2.50e-02 -0.17 0.0752 0.622 Pro_T L2
ENSG00000162607 USP1 456848 sc-eQTL 9.26e-01 -0.00489 0.0523 0.622 Pro_T L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 6.83e-01 0.0362 0.0884 0.622 Pro_T L2
ENSG00000079739 PGM1 -700266 sc-eQTL 9.95e-01 0.000604 0.0889 0.62 Treg L2
ENSG00000088035 ALG6 -474430 sc-eQTL 6.04e-01 -0.0494 0.095 0.62 Treg L2
ENSG00000116641 DOCK7 204759 sc-eQTL 9.48e-01 -0.00568 0.0873 0.62 Treg L2
ENSG00000125703 ATG4C 109013 sc-eQTL 8.47e-01 0.0173 0.0892 0.62 Treg L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 2.78e-01 0.101 0.093 0.62 Treg L2
ENSG00000162607 USP1 456848 sc-eQTL 5.74e-01 -0.0508 0.0902 0.62 Treg L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 6.86e-01 -0.0362 0.0892 0.62 Treg L2
ENSG00000079739 PGM1 -700266 sc-eQTL 4.06e-01 -0.0721 0.0866 0.61 cDC L2
ENSG00000088035 ALG6 -474430 sc-eQTL 3.80e-02 -0.182 0.0869 0.61 cDC L2
ENSG00000116641 DOCK7 204759 sc-eQTL 5.33e-01 0.0539 0.0862 0.61 cDC L2
ENSG00000125703 ATG4C 109013 sc-eQTL 5.23e-01 -0.0479 0.0749 0.61 cDC L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 4.92e-01 0.0653 0.0949 0.61 cDC L2
ENSG00000162607 USP1 456848 sc-eQTL 7.20e-01 0.0304 0.0845 0.61 cDC L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 7.80e-01 -0.0213 0.0763 0.61 cDC L2
ENSG00000079739 PGM1 -700266 sc-eQTL 3.81e-01 0.0725 0.0825 0.62 cMono_IL1B L2
ENSG00000088035 ALG6 -474430 sc-eQTL 9.59e-02 -0.137 0.0822 0.62 cMono_IL1B L2
ENSG00000116641 DOCK7 204759 sc-eQTL 4.06e-01 0.0725 0.0871 0.62 cMono_IL1B L2
ENSG00000125703 ATG4C 109013 sc-eQTL 7.32e-01 0.0211 0.0613 0.62 cMono_IL1B L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 6.28e-01 -0.0422 0.0868 0.62 cMono_IL1B L2
ENSG00000162607 USP1 456848 sc-eQTL 5.01e-01 -0.0515 0.0766 0.62 cMono_IL1B L2
ENSG00000240563 L1TD1 698296 sc-eQTL 9.68e-01 0.00312 0.077 0.62 cMono_IL1B L2
ENSG00000079739 PGM1 -700266 sc-eQTL 2.41e-01 0.107 0.0909 0.62 cMono_S100A L2
ENSG00000088035 ALG6 -474430 sc-eQTL 4.73e-01 -0.0665 0.0924 0.62 cMono_S100A L2
ENSG00000116641 DOCK7 204759 sc-eQTL 5.77e-01 -0.0479 0.0857 0.62 cMono_S100A L2
ENSG00000125703 ATG4C 109013 sc-eQTL 4.40e-01 0.0573 0.0741 0.62 cMono_S100A L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 5.55e-01 0.0494 0.0837 0.62 cMono_S100A L2
ENSG00000162607 USP1 456848 sc-eQTL 7.07e-01 0.0324 0.0862 0.62 cMono_S100A L2
ENSG00000240563 L1TD1 698296 sc-eQTL 4.66e-01 0.0523 0.0716 0.62 cMono_S100A L2
ENSG00000079739 PGM1 -700266 sc-eQTL 7.74e-01 -0.0305 0.106 0.615 gdT L2
ENSG00000088035 ALG6 -474430 sc-eQTL 7.75e-01 -0.0322 0.113 0.615 gdT L2
ENSG00000116641 DOCK7 204759 sc-eQTL 8.66e-01 -0.0187 0.111 0.615 gdT L2
ENSG00000125703 ATG4C 109013 sc-eQTL 7.84e-01 -0.029 0.106 0.615 gdT L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 1.47e-01 -0.162 0.111 0.615 gdT L2
ENSG00000162607 USP1 456848 sc-eQTL 5.48e-01 -0.0638 0.106 0.615 gdT L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 8.40e-01 -0.0223 0.11 0.615 gdT L2
ENSG00000079739 PGM1 -700266 sc-eQTL 7.16e-01 0.0333 0.0914 0.62 intMono L2
ENSG00000088035 ALG6 -474430 sc-eQTL 5.00e-01 0.0574 0.085 0.62 intMono L2
ENSG00000116641 DOCK7 204759 sc-eQTL 4.47e-01 0.0662 0.0868 0.62 intMono L2
ENSG00000125703 ATG4C 109013 sc-eQTL 9.98e-01 -0.000259 0.083 0.62 intMono L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 4.42e-01 0.0703 0.0913 0.62 intMono L2
ENSG00000162607 USP1 456848 sc-eQTL 2.59e-01 -0.105 0.0927 0.62 intMono L2
ENSG00000240563 L1TD1 698296 sc-eQTL 5.01e-01 -0.0461 0.0683 0.62 intMono L2
ENSG00000079739 PGM1 -700266 sc-eQTL 8.31e-01 -0.018 0.0839 0.618 ncMono L2
ENSG00000088035 ALG6 -474430 sc-eQTL 7.22e-01 0.0328 0.0922 0.618 ncMono L2
ENSG00000116641 DOCK7 204759 sc-eQTL 6.25e-01 -0.0444 0.0907 0.618 ncMono L2
ENSG00000125703 ATG4C 109013 sc-eQTL 5.56e-01 0.0499 0.0847 0.618 ncMono L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 3.30e-01 0.0863 0.0885 0.618 ncMono L2
ENSG00000162607 USP1 456848 sc-eQTL 8.59e-01 -0.0162 0.0906 0.618 ncMono L2
ENSG00000240563 L1TD1 698296 sc-eQTL 2.37e-01 -0.0759 0.064 0.618 ncMono L2
ENSG00000079739 PGM1 -700266 sc-eQTL 8.49e-01 -0.0188 0.0989 0.613 pDC L2
ENSG00000088035 ALG6 -474430 sc-eQTL 1.03e-02 0.245 0.0943 0.613 pDC L2
ENSG00000116641 DOCK7 204759 sc-eQTL 6.19e-01 -0.049 0.0983 0.613 pDC L2
ENSG00000125703 ATG4C 109013 sc-eQTL 4.37e-01 0.0686 0.0881 0.613 pDC L2
ENSG00000142856 ITGB3BP -700576 sc-eQTL 1.22e-01 -0.153 0.0983 0.613 pDC L2
ENSG00000162607 USP1 456848 sc-eQTL 2.08e-01 0.127 0.1 0.613 pDC L2
ENSG00000203965 EFCAB7 -630227 sc-eQTL 8.05e-01 -0.0217 0.0877 0.613 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -700266 sc-eQTL 5.63e-01 -0.0506 0.0872 0.62 B_Memory LOneK1K
ENSG00000088035 ALG6 -474430 sc-eQTL 3.39e-01 -0.0924 0.0963 0.62 B_Memory LOneK1K
ENSG00000116641 DOCK7 204759 sc-eQTL 5.56e-01 0.0493 0.0837 0.62 B_Memory LOneK1K
ENSG00000125703 ATG4C 109013 sc-eQTL 3.86e-01 -0.0588 0.0676 0.62 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -700576 sc-eQTL 5.54e-01 -0.0527 0.0889 0.62 B_Memory LOneK1K
ENSG00000162607 USP1 456848 sc-eQTL 1.68e-01 0.119 0.086 0.62 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.01e-01 -0.152 0.0921 0.62 B_Memory LOneK1K
ENSG00000079739 PGM1 -700266 sc-eQTL 6.96e-01 0.0352 0.09 0.62 B_Naive LOneK1K
ENSG00000088035 ALG6 -474430 sc-eQTL 3.23e-01 0.0917 0.0925 0.62 B_Naive LOneK1K
ENSG00000116641 DOCK7 204759 sc-eQTL 2.18e-01 -0.107 0.0863 0.62 B_Naive LOneK1K
ENSG00000125703 ATG4C 109013 sc-eQTL 3.12e-02 0.142 0.0654 0.62 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -700576 sc-eQTL 2.42e-01 -0.109 0.0931 0.62 B_Naive LOneK1K
ENSG00000162607 USP1 456848 sc-eQTL 2.18e-01 -0.0988 0.08 0.62 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -630227 sc-eQTL 1.44e-01 -0.137 0.0934 0.62 B_Naive LOneK1K
ENSG00000079739 PGM1 -700266 sc-eQTL 2.80e-01 0.0909 0.0839 0.62 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -474430 sc-eQTL 1.07e-01 -0.131 0.081 0.62 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 204759 sc-eQTL 6.29e-01 0.0396 0.082 0.62 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 109013 sc-eQTL 3.78e-01 0.05 0.0566 0.62 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -700576 sc-eQTL 8.65e-01 0.0143 0.0839 0.62 CD14_Mono LOneK1K
ENSG00000162607 USP1 456848 sc-eQTL 6.65e-01 -0.0311 0.0717 0.62 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 698296 sc-eQTL 6.00e-01 0.0408 0.0777 0.62 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -700266 sc-eQTL 9.75e-01 0.00247 0.0803 0.619 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -474430 sc-eQTL 7.49e-01 0.0292 0.0912 0.619 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 204759 sc-eQTL 9.00e-01 0.0113 0.0902 0.619 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 109013 sc-eQTL 5.83e-01 0.0423 0.0769 0.619 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -700576 sc-eQTL 1.94e-01 0.116 0.0889 0.619 CD16_Mono LOneK1K
ENSG00000162607 USP1 456848 sc-eQTL 1.62e-01 -0.117 0.0835 0.619 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 698296 sc-eQTL 2.25e-01 -0.0695 0.057 0.619 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -700266 sc-eQTL 7.61e-01 0.0212 0.0694 0.616 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -474430 sc-eQTL 5.26e-01 0.053 0.0833 0.616 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 204759 sc-eQTL 1.06e-01 0.12 0.0743 0.616 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 109013 sc-eQTL 5.64e-01 0.0431 0.0745 0.616 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -700576 sc-eQTL 9.24e-01 -0.00848 0.0884 0.616 NK_CD56dim LOneK1K
ENSG00000162607 USP1 456848 sc-eQTL 8.93e-01 0.0108 0.0802 0.616 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -630227 sc-eQTL 7.51e-01 -0.031 0.0976 0.616 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -700266 eQTL 0.0445 -0.0359 0.0179 0.0 0.0 0.377
ENSG00000116641 DOCK7 204777 eQTL 1.58e-09 0.133 0.0217 0.0 0.0 0.377
ENSG00000125703 ATG4C 109013 eQTL 0.000315 0.0605 0.0167 0.0 0.0 0.377
ENSG00000142856 ITGB3BP -700576 eQTL 0.00372 -0.085 0.0292 0.0 0.0 0.377
ENSG00000162607 USP1 456848 eQTL 0.000453 0.0451 0.0128 0.0 0.0 0.377

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 204777 1.63e-06 2.1e-06 2.24e-07 1.51e-06 3.45e-07 7.12e-07 1.27e-06 4.11e-07 1.73e-06 7.36e-07 1.89e-06 1.2e-06 2.69e-06 7.96e-07 3.64e-07 9.69e-07 1.1e-06 1.08e-06 7.65e-07 4.4e-07 7.58e-07 1.95e-06 1.58e-06 5.79e-07 2.67e-06 7.59e-07 1.03e-06 8.87e-07 1.64e-06 1.61e-06 8.15e-07 2.98e-07 2.15e-07 5.72e-07 8.69e-07 4.3e-07 6.97e-07 2.29e-07 5.09e-07 3.35e-07 2.83e-07 2.89e-06 3.51e-07 1.38e-07 2.24e-07 3.26e-07 2.41e-07 3.66e-08 1.58e-07
ENSG00000125703 ATG4C 109013 4.49e-06 4.83e-06 6.03e-07 3.17e-06 8.3e-07 1.53e-06 4.27e-06 9.76e-07 4.15e-06 1.99e-06 5.18e-06 3.39e-06 7.47e-06 2.33e-06 1.41e-06 2.98e-06 2.07e-06 2.78e-06 1.46e-06 9.15e-07 1.93e-06 4.53e-06 3.78e-06 1.71e-06 7.07e-06 1.24e-06 2.41e-06 1.49e-06 4.26e-06 4.17e-06 2.19e-06 4.72e-07 5.91e-07 1.77e-06 2.23e-06 9.33e-07 9.24e-07 4.21e-07 1.32e-06 3.64e-07 2.11e-07 6.09e-06 4.35e-07 1.93e-07 3.4e-07 4.99e-07 6.48e-07 1.98e-07 1.76e-07
ENSG00000142856 ITGB3BP -700576 3.02e-07 1.5e-07 5.35e-08 2.26e-07 9.24e-08 8.63e-08 1.99e-07 5.43e-08 1.5e-07 7.6e-08 1.62e-07 1.15e-07 2.05e-07 8e-08 5.69e-08 7.89e-08 4.18e-08 1.44e-07 6.75e-08 5.04e-08 1.25e-07 1.42e-07 1.62e-07 3.17e-08 2.28e-07 1.22e-07 1.17e-07 1.04e-07 1.26e-07 1.17e-07 1.07e-07 3.54e-08 3.66e-08 9.76e-08 3.97e-08 2.99e-08 5.58e-08 8.93e-08 6.76e-08 3.67e-08 5.39e-08 1.6e-07 5.27e-08 7.24e-09 4.25e-08 1.19e-08 9.29e-08 1.89e-09 5e-08