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Genes within 1Mb (chr1:62877674:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -715737 sc-eQTL 4.50e-01 0.0586 0.0775 0.596 B L1
ENSG00000088035 ALG6 -489901 sc-eQTL 9.47e-01 0.00538 0.0804 0.596 B L1
ENSG00000116641 DOCK7 189288 sc-eQTL 8.69e-01 -0.0133 0.0804 0.596 B L1
ENSG00000125703 ATG4C 93542 sc-eQTL 3.03e-01 0.0576 0.0557 0.596 B L1
ENSG00000142856 ITGB3BP -716047 sc-eQTL 3.10e-01 -0.0903 0.0887 0.596 B L1
ENSG00000162607 USP1 441377 sc-eQTL 9.56e-01 0.00424 0.0772 0.596 B L1
ENSG00000203965 EFCAB7 -645698 sc-eQTL 1.37e-01 -0.135 0.0906 0.596 B L1
ENSG00000079739 PGM1 -715737 sc-eQTL 9.93e-01 0.000588 0.0666 0.596 CD4T L1
ENSG00000088035 ALG6 -489901 sc-eQTL 7.15e-01 -0.0269 0.0735 0.596 CD4T L1
ENSG00000116641 DOCK7 189288 sc-eQTL 6.10e-01 0.0379 0.0744 0.596 CD4T L1
ENSG00000125703 ATG4C 93542 sc-eQTL 8.48e-01 0.0115 0.0601 0.596 CD4T L1
ENSG00000142856 ITGB3BP -716047 sc-eQTL 3.29e-01 0.0832 0.0851 0.596 CD4T L1
ENSG00000162607 USP1 441377 sc-eQTL 6.03e-01 0.0304 0.0582 0.596 CD4T L1
ENSG00000203965 EFCAB7 -645698 sc-eQTL 5.64e-02 0.146 0.0759 0.596 CD4T L1
ENSG00000079739 PGM1 -715737 sc-eQTL 7.41e-01 0.0245 0.0739 0.596 CD8T L1
ENSG00000088035 ALG6 -489901 sc-eQTL 6.02e-01 -0.0425 0.0814 0.596 CD8T L1
ENSG00000116641 DOCK7 189288 sc-eQTL 8.19e-01 -0.0189 0.0825 0.596 CD8T L1
ENSG00000125703 ATG4C 93542 sc-eQTL 5.50e-02 0.15 0.0777 0.596 CD8T L1
ENSG00000142856 ITGB3BP -716047 sc-eQTL 5.82e-01 0.0483 0.0876 0.596 CD8T L1
ENSG00000162607 USP1 441377 sc-eQTL 5.52e-01 -0.0407 0.0683 0.596 CD8T L1
ENSG00000203965 EFCAB7 -645698 sc-eQTL 3.40e-01 0.0834 0.0872 0.596 CD8T L1
ENSG00000079739 PGM1 -715737 sc-eQTL 6.70e-01 -0.0349 0.0819 0.595 DC L1
ENSG00000088035 ALG6 -489901 sc-eQTL 7.81e-01 0.0236 0.0846 0.595 DC L1
ENSG00000116641 DOCK7 189288 sc-eQTL 9.38e-01 0.00675 0.0867 0.595 DC L1
ENSG00000125703 ATG4C 93542 sc-eQTL 7.84e-01 -0.0186 0.0678 0.595 DC L1
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.61e-01 -0.0166 0.0948 0.595 DC L1
ENSG00000162607 USP1 441377 sc-eQTL 6.64e-01 0.036 0.0828 0.595 DC L1
ENSG00000203965 EFCAB7 -645698 sc-eQTL 5.31e-01 -0.0518 0.0825 0.595 DC L1
ENSG00000079739 PGM1 -715737 sc-eQTL 3.04e-01 0.0826 0.08 0.596 Mono L1
ENSG00000088035 ALG6 -489901 sc-eQTL 1.15e-01 -0.132 0.0832 0.596 Mono L1
ENSG00000116641 DOCK7 189288 sc-eQTL 3.66e-01 0.0733 0.0808 0.596 Mono L1
ENSG00000125703 ATG4C 93542 sc-eQTL 1.88e-01 0.072 0.0545 0.596 Mono L1
ENSG00000142856 ITGB3BP -716047 sc-eQTL 4.42e-01 0.0665 0.0864 0.596 Mono L1
ENSG00000162607 USP1 441377 sc-eQTL 3.56e-01 -0.0656 0.0709 0.596 Mono L1
ENSG00000240563 L1TD1 682825 sc-eQTL 4.81e-01 -0.0467 0.0662 0.596 Mono L1
ENSG00000079739 PGM1 -715737 sc-eQTL 3.47e-01 0.065 0.0691 0.597 NK L1
ENSG00000088035 ALG6 -489901 sc-eQTL 8.12e-01 -0.0193 0.0811 0.597 NK L1
ENSG00000116641 DOCK7 189288 sc-eQTL 8.84e-02 0.114 0.0664 0.597 NK L1
ENSG00000125703 ATG4C 93542 sc-eQTL 8.59e-01 -0.0128 0.0718 0.597 NK L1
ENSG00000142856 ITGB3BP -716047 sc-eQTL 7.61e-01 0.0272 0.0892 0.597 NK L1
ENSG00000162607 USP1 441377 sc-eQTL 6.53e-01 -0.0359 0.0797 0.597 NK L1
ENSG00000203965 EFCAB7 -645698 sc-eQTL 9.69e-01 0.00372 0.0969 0.597 NK L1
ENSG00000079739 PGM1 -715737 sc-eQTL 3.88e-01 -0.0673 0.0779 0.596 Other_T L1
ENSG00000088035 ALG6 -489901 sc-eQTL 2.25e-01 0.0951 0.0781 0.596 Other_T L1
ENSG00000116641 DOCK7 189288 sc-eQTL 9.37e-01 0.00629 0.08 0.596 Other_T L1
ENSG00000125703 ATG4C 93542 sc-eQTL 1.73e-03 0.215 0.0677 0.596 Other_T L1
ENSG00000142856 ITGB3BP -716047 sc-eQTL 2.58e-01 -0.0694 0.0613 0.596 Other_T L1
ENSG00000162607 USP1 441377 sc-eQTL 9.24e-01 -0.00507 0.0533 0.596 Other_T L1
ENSG00000203965 EFCAB7 -645698 sc-eQTL 3.08e-01 0.0967 0.0946 0.596 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -715737 sc-eQTL 5.99e-01 -0.0566 0.107 0.594 B_Activated L2
ENSG00000088035 ALG6 -489901 sc-eQTL 4.91e-01 -0.0711 0.103 0.594 B_Activated L2
ENSG00000116641 DOCK7 189288 sc-eQTL 9.08e-01 0.0111 0.0959 0.594 B_Activated L2
ENSG00000125703 ATG4C 93542 sc-eQTL 5.06e-01 -0.0672 0.101 0.594 B_Activated L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 7.80e-02 -0.173 0.0977 0.594 B_Activated L2
ENSG00000162607 USP1 441377 sc-eQTL 7.86e-01 -0.0291 0.107 0.594 B_Activated L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 6.61e-01 0.041 0.0932 0.594 B_Activated L2
ENSG00000079739 PGM1 -715737 sc-eQTL 5.92e-01 -0.0509 0.0949 0.597 B_Intermediate L2
ENSG00000088035 ALG6 -489901 sc-eQTL 6.82e-01 -0.0395 0.0965 0.597 B_Intermediate L2
ENSG00000116641 DOCK7 189288 sc-eQTL 5.37e-01 0.0569 0.0921 0.597 B_Intermediate L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.95e-01 -0.0307 0.078 0.597 B_Intermediate L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.20e-01 0.0212 0.0929 0.597 B_Intermediate L2
ENSG00000162607 USP1 441377 sc-eQTL 5.16e-01 0.0604 0.0927 0.597 B_Intermediate L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 8.80e-02 -0.157 0.0914 0.597 B_Intermediate L2
ENSG00000079739 PGM1 -715737 sc-eQTL 7.34e-01 -0.0315 0.0926 0.595 B_Memory L2
ENSG00000088035 ALG6 -489901 sc-eQTL 3.67e-01 -0.0849 0.0939 0.595 B_Memory L2
ENSG00000116641 DOCK7 189288 sc-eQTL 7.07e-01 0.0332 0.0883 0.595 B_Memory L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.87e-01 -0.0338 0.0839 0.595 B_Memory L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 9.51e-01 -0.00586 0.096 0.595 B_Memory L2
ENSG00000162607 USP1 441377 sc-eQTL 1.56e-01 0.137 0.0964 0.595 B_Memory L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 8.10e-01 -0.023 0.0953 0.595 B_Memory L2
ENSG00000079739 PGM1 -715737 sc-eQTL 7.45e-01 0.0304 0.0932 0.596 B_Naive1 L2
ENSG00000088035 ALG6 -489901 sc-eQTL 2.72e-01 0.103 0.0933 0.596 B_Naive1 L2
ENSG00000116641 DOCK7 189288 sc-eQTL 1.84e-01 -0.119 0.0893 0.596 B_Naive1 L2
ENSG00000125703 ATG4C 93542 sc-eQTL 4.10e-02 0.141 0.0684 0.596 B_Naive1 L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 4.14e-01 -0.0748 0.0915 0.596 B_Naive1 L2
ENSG00000162607 USP1 441377 sc-eQTL 1.38e-01 -0.119 0.0801 0.596 B_Naive1 L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 2.09e-01 -0.123 0.0974 0.596 B_Naive1 L2
ENSG00000079739 PGM1 -715737 sc-eQTL 3.79e-01 0.0813 0.0923 0.597 B_Naive2 L2
ENSG00000088035 ALG6 -489901 sc-eQTL 3.78e-01 -0.085 0.0962 0.597 B_Naive2 L2
ENSG00000116641 DOCK7 189288 sc-eQTL 6.87e-01 0.0374 0.0926 0.597 B_Naive2 L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.96e-01 0.0349 0.0892 0.597 B_Naive2 L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 9.76e-01 0.00288 0.0967 0.597 B_Naive2 L2
ENSG00000162607 USP1 441377 sc-eQTL 8.58e-01 0.0165 0.0921 0.597 B_Naive2 L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 8.67e-01 -0.0162 0.0963 0.597 B_Naive2 L2
ENSG00000079739 PGM1 -715737 sc-eQTL 6.06e-02 -0.174 0.0921 0.589 CD4_CTL L2
ENSG00000088035 ALG6 -489901 sc-eQTL 6.00e-01 0.0515 0.0982 0.589 CD4_CTL L2
ENSG00000116641 DOCK7 189288 sc-eQTL 1.25e-01 0.132 0.0854 0.589 CD4_CTL L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.55e-01 0.0398 0.0888 0.589 CD4_CTL L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 9.64e-02 0.158 0.0944 0.589 CD4_CTL L2
ENSG00000162607 USP1 441377 sc-eQTL 9.39e-01 -0.00694 0.0904 0.589 CD4_CTL L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 3.02e-01 -0.0932 0.09 0.589 CD4_CTL L2
ENSG00000079739 PGM1 -715737 sc-eQTL 6.10e-01 0.0381 0.0746 0.596 CD4_Naive L2
ENSG00000088035 ALG6 -489901 sc-eQTL 7.77e-01 0.023 0.0811 0.596 CD4_Naive L2
ENSG00000116641 DOCK7 189288 sc-eQTL 9.03e-01 -0.00969 0.0797 0.596 CD4_Naive L2
ENSG00000125703 ATG4C 93542 sc-eQTL 9.90e-01 -0.000917 0.0705 0.596 CD4_Naive L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.69e-01 0.0142 0.0861 0.596 CD4_Naive L2
ENSG00000162607 USP1 441377 sc-eQTL 4.28e-01 0.0521 0.0657 0.596 CD4_Naive L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 8.22e-03 0.224 0.0841 0.596 CD4_Naive L2
ENSG00000079739 PGM1 -715737 sc-eQTL 9.02e-01 -0.00963 0.0779 0.596 CD4_TCM L2
ENSG00000088035 ALG6 -489901 sc-eQTL 8.57e-02 -0.155 0.0898 0.596 CD4_TCM L2
ENSG00000116641 DOCK7 189288 sc-eQTL 9.02e-01 -0.00985 0.0802 0.596 CD4_TCM L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.07e-01 0.0401 0.078 0.596 CD4_TCM L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 2.44e-01 0.107 0.0917 0.596 CD4_TCM L2
ENSG00000162607 USP1 441377 sc-eQTL 9.21e-01 0.00747 0.0754 0.596 CD4_TCM L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 3.42e-01 0.0846 0.0888 0.596 CD4_TCM L2
ENSG00000079739 PGM1 -715737 sc-eQTL 9.83e-01 0.00201 0.0919 0.596 CD4_TEM L2
ENSG00000088035 ALG6 -489901 sc-eQTL 3.53e-01 -0.0859 0.0922 0.596 CD4_TEM L2
ENSG00000116641 DOCK7 189288 sc-eQTL 9.92e-01 0.000893 0.0901 0.596 CD4_TEM L2
ENSG00000125703 ATG4C 93542 sc-eQTL 8.12e-01 0.0209 0.0875 0.596 CD4_TEM L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 6.89e-01 0.0362 0.0903 0.596 CD4_TEM L2
ENSG00000162607 USP1 441377 sc-eQTL 4.72e-01 0.0615 0.0854 0.596 CD4_TEM L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 1.44e-01 -0.137 0.0931 0.596 CD4_TEM L2
ENSG00000079739 PGM1 -715737 sc-eQTL 1.54e-01 0.12 0.0841 0.596 CD8_CTL L2
ENSG00000088035 ALG6 -489901 sc-eQTL 3.92e-01 -0.0769 0.0897 0.596 CD8_CTL L2
ENSG00000116641 DOCK7 189288 sc-eQTL 3.09e-01 0.0867 0.085 0.596 CD8_CTL L2
ENSG00000125703 ATG4C 93542 sc-eQTL 3.54e-02 0.19 0.0898 0.596 CD8_CTL L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 9.05e-01 -0.0113 0.0943 0.596 CD8_CTL L2
ENSG00000162607 USP1 441377 sc-eQTL 9.10e-01 0.00959 0.0845 0.596 CD8_CTL L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 1.92e-01 0.126 0.0962 0.596 CD8_CTL L2
ENSG00000079739 PGM1 -715737 sc-eQTL 8.33e-01 0.0181 0.0856 0.596 CD8_Naive L2
ENSG00000088035 ALG6 -489901 sc-eQTL 5.22e-01 -0.0568 0.0886 0.596 CD8_Naive L2
ENSG00000116641 DOCK7 189288 sc-eQTL 6.25e-02 -0.17 0.0909 0.596 CD8_Naive L2
ENSG00000125703 ATG4C 93542 sc-eQTL 1.50e-01 0.127 0.0875 0.596 CD8_Naive L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.17e-01 0.0206 0.0891 0.596 CD8_Naive L2
ENSG00000162607 USP1 441377 sc-eQTL 8.74e-01 -0.0119 0.0753 0.596 CD8_Naive L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 3.97e-01 0.0711 0.0838 0.596 CD8_Naive L2
ENSG00000079739 PGM1 -715737 sc-eQTL 6.01e-03 -0.258 0.0927 0.593 CD8_TCM L2
ENSG00000088035 ALG6 -489901 sc-eQTL 1.08e-01 0.153 0.0951 0.593 CD8_TCM L2
ENSG00000116641 DOCK7 189288 sc-eQTL 5.78e-01 0.052 0.0934 0.593 CD8_TCM L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.57e-01 -0.0425 0.0955 0.593 CD8_TCM L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 4.15e-01 0.0757 0.0927 0.593 CD8_TCM L2
ENSG00000162607 USP1 441377 sc-eQTL 9.51e-01 0.00551 0.0894 0.593 CD8_TCM L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 5.16e-03 0.262 0.0927 0.593 CD8_TCM L2
ENSG00000079739 PGM1 -715737 sc-eQTL 3.35e-01 0.0948 0.0982 0.605 CD8_TEM L2
ENSG00000088035 ALG6 -489901 sc-eQTL 5.87e-02 0.186 0.0979 0.605 CD8_TEM L2
ENSG00000116641 DOCK7 189288 sc-eQTL 9.75e-01 0.00296 0.0957 0.605 CD8_TEM L2
ENSG00000125703 ATG4C 93542 sc-eQTL 1.00e-01 0.151 0.0914 0.605 CD8_TEM L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 4.84e-01 0.0698 0.0995 0.605 CD8_TEM L2
ENSG00000162607 USP1 441377 sc-eQTL 3.03e-01 -0.098 0.0948 0.605 CD8_TEM L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 6.95e-01 -0.038 0.0966 0.605 CD8_TEM L2
ENSG00000079739 PGM1 -715737 sc-eQTL 1.32e-01 -0.134 0.0887 0.595 MAIT L2
ENSG00000088035 ALG6 -489901 sc-eQTL 9.52e-01 0.00534 0.0883 0.595 MAIT L2
ENSG00000116641 DOCK7 189288 sc-eQTL 6.59e-01 -0.0374 0.0846 0.595 MAIT L2
ENSG00000125703 ATG4C 93542 sc-eQTL 1.11e-02 0.225 0.0878 0.595 MAIT L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 6.67e-01 -0.0385 0.0893 0.595 MAIT L2
ENSG00000162607 USP1 441377 sc-eQTL 6.32e-01 0.0425 0.0886 0.595 MAIT L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 2.93e-01 0.0967 0.0918 0.595 MAIT L2
ENSG00000079739 PGM1 -715737 sc-eQTL 6.05e-01 -0.047 0.0906 0.593 NK_CD56bright L2
ENSG00000088035 ALG6 -489901 sc-eQTL 8.08e-01 -0.0226 0.0929 0.593 NK_CD56bright L2
ENSG00000116641 DOCK7 189288 sc-eQTL 5.53e-02 -0.154 0.0798 0.593 NK_CD56bright L2
ENSG00000125703 ATG4C 93542 sc-eQTL 1.09e-01 -0.144 0.0894 0.593 NK_CD56bright L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.64e-01 0.0161 0.0936 0.593 NK_CD56bright L2
ENSG00000162607 USP1 441377 sc-eQTL 7.61e-01 0.0294 0.0965 0.593 NK_CD56bright L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 1.14e-01 -0.146 0.0918 0.593 NK_CD56bright L2
ENSG00000079739 PGM1 -715737 sc-eQTL 4.67e-01 -0.0523 0.0718 0.595 NK_CD56dim L2
ENSG00000088035 ALG6 -489901 sc-eQTL 7.38e-01 -0.0305 0.0911 0.595 NK_CD56dim L2
ENSG00000116641 DOCK7 189288 sc-eQTL 1.61e-01 0.111 0.079 0.595 NK_CD56dim L2
ENSG00000125703 ATG4C 93542 sc-eQTL 7.03e-01 -0.0307 0.0806 0.595 NK_CD56dim L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 9.53e-01 0.00544 0.0917 0.595 NK_CD56dim L2
ENSG00000162607 USP1 441377 sc-eQTL 7.74e-01 -0.0255 0.0889 0.595 NK_CD56dim L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 7.56e-01 0.0308 0.099 0.595 NK_CD56dim L2
ENSG00000079739 PGM1 -715737 sc-eQTL 1.78e-01 0.13 0.0961 0.6 NK_HLA L2
ENSG00000088035 ALG6 -489901 sc-eQTL 2.05e-01 -0.127 0.0997 0.6 NK_HLA L2
ENSG00000116641 DOCK7 189288 sc-eQTL 4.96e-01 0.0521 0.0764 0.6 NK_HLA L2
ENSG00000125703 ATG4C 93542 sc-eQTL 1.48e-01 0.128 0.0885 0.6 NK_HLA L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.32e-01 0.0199 0.0934 0.6 NK_HLA L2
ENSG00000162607 USP1 441377 sc-eQTL 9.10e-01 0.0111 0.0978 0.6 NK_HLA L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 2.80e-01 0.0961 0.0887 0.6 NK_HLA L2
ENSG00000079739 PGM1 -715737 sc-eQTL 1.50e-01 0.112 0.0777 0.595 NK_cytokine L2
ENSG00000088035 ALG6 -489901 sc-eQTL 1.16e-01 0.138 0.0877 0.595 NK_cytokine L2
ENSG00000116641 DOCK7 189288 sc-eQTL 8.35e-02 0.141 0.0811 0.595 NK_cytokine L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.97e-01 0.0326 0.0836 0.595 NK_cytokine L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 7.70e-01 -0.0253 0.0866 0.595 NK_cytokine L2
ENSG00000162607 USP1 441377 sc-eQTL 6.37e-01 -0.043 0.091 0.595 NK_cytokine L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 2.91e-01 0.0975 0.092 0.595 NK_cytokine L2
ENSG00000079739 PGM1 -715737 sc-eQTL 7.23e-01 0.0368 0.104 0.6 PB L2
ENSG00000088035 ALG6 -489901 sc-eQTL 8.74e-01 -0.0173 0.109 0.6 PB L2
ENSG00000116641 DOCK7 189288 sc-eQTL 8.95e-01 -0.0155 0.116 0.6 PB L2
ENSG00000125703 ATG4C 93542 sc-eQTL 4.56e-01 0.0758 0.101 0.6 PB L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.79e-01 -0.0155 0.101 0.6 PB L2
ENSG00000162607 USP1 441377 sc-eQTL 8.31e-01 0.0216 0.101 0.6 PB L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 5.65e-01 0.0641 0.111 0.6 PB L2
ENSG00000079739 PGM1 -715737 sc-eQTL 6.91e-01 0.0335 0.0843 0.596 Pro_T L2
ENSG00000088035 ALG6 -489901 sc-eQTL 7.23e-01 0.0304 0.0858 0.596 Pro_T L2
ENSG00000116641 DOCK7 189288 sc-eQTL 2.05e-01 0.109 0.0858 0.596 Pro_T L2
ENSG00000125703 ATG4C 93542 sc-eQTL 6.15e-01 0.0379 0.0753 0.596 Pro_T L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 3.04e-02 -0.163 0.0747 0.596 Pro_T L2
ENSG00000162607 USP1 441377 sc-eQTL 6.83e-01 0.0212 0.052 0.596 Pro_T L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 1.03e-01 0.143 0.0873 0.596 Pro_T L2
ENSG00000079739 PGM1 -715737 sc-eQTL 9.02e-01 0.0111 0.0895 0.596 Treg L2
ENSG00000088035 ALG6 -489901 sc-eQTL 7.92e-01 0.0252 0.0957 0.596 Treg L2
ENSG00000116641 DOCK7 189288 sc-eQTL 8.70e-01 0.0144 0.0879 0.596 Treg L2
ENSG00000125703 ATG4C 93542 sc-eQTL 9.00e-01 0.0113 0.0898 0.596 Treg L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 1.96e-01 0.121 0.0936 0.596 Treg L2
ENSG00000162607 USP1 441377 sc-eQTL 6.60e-01 -0.0401 0.0909 0.596 Treg L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 9.87e-01 -0.00148 0.0899 0.596 Treg L2
ENSG00000079739 PGM1 -715737 sc-eQTL 5.59e-01 -0.0516 0.0882 0.593 cDC L2
ENSG00000088035 ALG6 -489901 sc-eQTL 6.88e-02 -0.162 0.0887 0.593 cDC L2
ENSG00000116641 DOCK7 189288 sc-eQTL 4.83e-01 0.0617 0.0877 0.593 cDC L2
ENSG00000125703 ATG4C 93542 sc-eQTL 5.24e-01 -0.0486 0.0762 0.593 cDC L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 7.59e-01 0.0298 0.0967 0.593 cDC L2
ENSG00000162607 USP1 441377 sc-eQTL 6.82e-01 0.0353 0.0861 0.593 cDC L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 7.24e-01 0.0275 0.0777 0.593 cDC L2
ENSG00000079739 PGM1 -715737 sc-eQTL 2.07e-01 0.105 0.0827 0.596 cMono_IL1B L2
ENSG00000088035 ALG6 -489901 sc-eQTL 7.08e-02 -0.15 0.0825 0.596 cMono_IL1B L2
ENSG00000116641 DOCK7 189288 sc-eQTL 4.91e-01 0.0603 0.0875 0.596 cMono_IL1B L2
ENSG00000125703 ATG4C 93542 sc-eQTL 3.86e-01 0.0534 0.0615 0.596 cMono_IL1B L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 4.54e-01 0.0654 0.0872 0.596 cMono_IL1B L2
ENSG00000162607 USP1 441377 sc-eQTL 4.60e-01 -0.0569 0.0769 0.596 cMono_IL1B L2
ENSG00000240563 L1TD1 682825 sc-eQTL 7.60e-01 -0.0237 0.0773 0.596 cMono_IL1B L2
ENSG00000079739 PGM1 -715737 sc-eQTL 4.22e-01 0.0737 0.0917 0.596 cMono_S100A L2
ENSG00000088035 ALG6 -489901 sc-eQTL 2.78e-01 -0.101 0.0928 0.596 cMono_S100A L2
ENSG00000116641 DOCK7 189288 sc-eQTL 8.39e-01 0.0175 0.0863 0.596 cMono_S100A L2
ENSG00000125703 ATG4C 93542 sc-eQTL 4.63e-01 0.0548 0.0746 0.596 cMono_S100A L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 4.14e-01 0.0689 0.0842 0.596 cMono_S100A L2
ENSG00000162607 USP1 441377 sc-eQTL 6.47e-01 -0.0398 0.0867 0.596 cMono_S100A L2
ENSG00000240563 L1TD1 682825 sc-eQTL 5.74e-01 0.0406 0.0721 0.596 cMono_S100A L2
ENSG00000079739 PGM1 -715737 sc-eQTL 3.70e-01 -0.0952 0.106 0.594 gdT L2
ENSG00000088035 ALG6 -489901 sc-eQTL 4.58e-01 -0.0842 0.113 0.594 gdT L2
ENSG00000116641 DOCK7 189288 sc-eQTL 5.10e-01 0.0734 0.111 0.594 gdT L2
ENSG00000125703 ATG4C 93542 sc-eQTL 4.36e-01 -0.0827 0.106 0.594 gdT L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 3.91e-01 -0.0968 0.112 0.594 gdT L2
ENSG00000162607 USP1 441377 sc-eQTL 2.20e-01 -0.131 0.106 0.594 gdT L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 9.00e-01 -0.0139 0.111 0.594 gdT L2
ENSG00000079739 PGM1 -715737 sc-eQTL 5.51e-01 0.0545 0.0913 0.598 intMono L2
ENSG00000088035 ALG6 -489901 sc-eQTL 4.63e-01 0.0624 0.085 0.598 intMono L2
ENSG00000116641 DOCK7 189288 sc-eQTL 5.08e-01 0.0575 0.0868 0.598 intMono L2
ENSG00000125703 ATG4C 93542 sc-eQTL 7.53e-01 -0.0261 0.0829 0.598 intMono L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 5.05e-01 0.0609 0.0913 0.598 intMono L2
ENSG00000162607 USP1 441377 sc-eQTL 4.74e-01 -0.0665 0.0928 0.598 intMono L2
ENSG00000240563 L1TD1 682825 sc-eQTL 4.09e-01 -0.0564 0.0682 0.598 intMono L2
ENSG00000079739 PGM1 -715737 sc-eQTL 8.86e-01 -0.0122 0.085 0.602 ncMono L2
ENSG00000088035 ALG6 -489901 sc-eQTL 3.48e-01 0.0877 0.0932 0.602 ncMono L2
ENSG00000116641 DOCK7 189288 sc-eQTL 8.76e-01 -0.0144 0.0919 0.602 ncMono L2
ENSG00000125703 ATG4C 93542 sc-eQTL 3.75e-01 0.0762 0.0857 0.602 ncMono L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 3.75e-01 0.0798 0.0897 0.602 ncMono L2
ENSG00000162607 USP1 441377 sc-eQTL 7.30e-01 -0.0318 0.0918 0.602 ncMono L2
ENSG00000240563 L1TD1 682825 sc-eQTL 3.14e-01 -0.0655 0.0649 0.602 ncMono L2
ENSG00000079739 PGM1 -715737 sc-eQTL 7.32e-01 -0.0348 0.102 0.596 pDC L2
ENSG00000088035 ALG6 -489901 sc-eQTL 4.68e-02 0.196 0.0978 0.596 pDC L2
ENSG00000116641 DOCK7 189288 sc-eQTL 7.64e-01 -0.0305 0.101 0.596 pDC L2
ENSG00000125703 ATG4C 93542 sc-eQTL 4.52e-01 0.0683 0.0907 0.596 pDC L2
ENSG00000142856 ITGB3BP -716047 sc-eQTL 8.62e-02 -0.174 0.101 0.596 pDC L2
ENSG00000162607 USP1 441377 sc-eQTL 2.31e-01 0.124 0.103 0.596 pDC L2
ENSG00000203965 EFCAB7 -645698 sc-eQTL 7.69e-01 -0.0265 0.0902 0.596 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -715737 sc-eQTL 5.01e-01 -0.0592 0.0879 0.596 B_Memory LOneK1K
ENSG00000088035 ALG6 -489901 sc-eQTL 2.53e-01 -0.111 0.097 0.596 B_Memory LOneK1K
ENSG00000116641 DOCK7 189288 sc-eQTL 2.52e-01 0.0968 0.0842 0.596 B_Memory LOneK1K
ENSG00000125703 ATG4C 93542 sc-eQTL 5.08e-01 -0.0453 0.0682 0.596 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -716047 sc-eQTL 5.56e-01 -0.0529 0.0896 0.596 B_Memory LOneK1K
ENSG00000162607 USP1 441377 sc-eQTL 1.26e-01 0.133 0.0866 0.596 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -645698 sc-eQTL 2.12e-01 -0.117 0.0931 0.596 B_Memory LOneK1K
ENSG00000079739 PGM1 -715737 sc-eQTL 4.84e-01 0.0634 0.0903 0.596 B_Naive LOneK1K
ENSG00000088035 ALG6 -489901 sc-eQTL 4.58e-01 0.0692 0.093 0.596 B_Naive LOneK1K
ENSG00000116641 DOCK7 189288 sc-eQTL 4.99e-01 -0.0589 0.0869 0.596 B_Naive LOneK1K
ENSG00000125703 ATG4C 93542 sc-eQTL 2.07e-02 0.153 0.0655 0.596 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -716047 sc-eQTL 4.49e-01 -0.0711 0.0937 0.596 B_Naive LOneK1K
ENSG00000162607 USP1 441377 sc-eQTL 3.22e-01 -0.0799 0.0804 0.596 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -645698 sc-eQTL 3.08e-01 -0.0961 0.0941 0.596 B_Naive LOneK1K
ENSG00000079739 PGM1 -715737 sc-eQTL 2.96e-01 0.0884 0.0844 0.596 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -489901 sc-eQTL 5.77e-02 -0.155 0.0812 0.596 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 189288 sc-eQTL 5.08e-01 0.0547 0.0824 0.596 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 93542 sc-eQTL 1.82e-01 0.076 0.0568 0.596 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -716047 sc-eQTL 3.27e-01 0.0828 0.0842 0.596 CD14_Mono LOneK1K
ENSG00000162607 USP1 441377 sc-eQTL 3.26e-01 -0.0708 0.0719 0.596 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 682825 sc-eQTL 8.15e-01 0.0183 0.0781 0.596 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -715737 sc-eQTL 4.79e-01 0.0571 0.0806 0.597 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -489901 sc-eQTL 2.03e-01 0.117 0.0913 0.597 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 189288 sc-eQTL 8.30e-01 0.0194 0.0906 0.597 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 93542 sc-eQTL 8.25e-01 0.0171 0.0773 0.597 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -716047 sc-eQTL 2.41e-01 0.105 0.0894 0.597 CD16_Mono LOneK1K
ENSG00000162607 USP1 441377 sc-eQTL 2.13e-01 -0.105 0.084 0.597 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 682825 sc-eQTL 1.12e-01 -0.0912 0.0572 0.597 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -715737 sc-eQTL 3.53e-01 0.0654 0.0702 0.595 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -489901 sc-eQTL 9.87e-01 0.00141 0.0845 0.595 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 189288 sc-eQTL 1.99e-02 0.175 0.0747 0.595 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 93542 sc-eQTL 9.61e-01 -0.00366 0.0755 0.595 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -716047 sc-eQTL 7.58e-01 0.0277 0.0895 0.595 NK_CD56dim LOneK1K
ENSG00000162607 USP1 441377 sc-eQTL 4.25e-01 -0.0649 0.0811 0.595 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -645698 sc-eQTL 4.14e-01 0.0807 0.0987 0.595 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 189306 eQTL 7.18e-11 0.142 0.0215 0.0 0.0 0.384
ENSG00000125703 ATG4C 93542 eQTL 6.97e-05 0.0663 0.0166 0.00125 0.00148 0.384
ENSG00000132855 ANGPTL3 280187 pQTL 0.00177 0.0912 0.0291 0.0 0.0 0.391
ENSG00000142856 ITGB3BP -716047 eQTL 0.00253 -0.0879 0.029 0.0 0.0 0.384
ENSG00000162607 USP1 441377 eQTL 0.000758 0.043 0.0127 0.0 0.0 0.384

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 189306 2.23e-06 2.44e-06 2.71e-07 1.62e-06 4.41e-07 7.82e-07 1.3e-06 4.75e-07 1.72e-06 7.42e-07 1.92e-06 1.46e-06 3.44e-06 9.52e-07 4.97e-07 1.24e-06 1.09e-06 1.51e-06 5.95e-07 8.21e-07 6.75e-07 2.07e-06 1.79e-06 9.8e-07 2.86e-06 1.21e-06 1.16e-06 1.17e-06 1.7e-06 1.67e-06 1.16e-06 2.66e-07 3.79e-07 1.12e-06 9.18e-07 6.32e-07 7.83e-07 4.03e-07 8.73e-07 2.57e-07 3.3e-07 2.87e-06 3.75e-07 1.91e-07 3.83e-07 2.99e-07 4.03e-07 2.53e-07 2.6e-07
ENSG00000125703 ATG4C 93542 5.65e-06 5.58e-06 7.29e-07 3.45e-06 1.69e-06 1.59e-06 6.83e-06 1.1e-06 5.05e-06 2.8e-06 6.7e-06 3.37e-06 8.81e-06 1.75e-06 1.02e-06 3.74e-06 2.24e-06 3.95e-06 1.45e-06 1.38e-06 2.87e-06 5.15e-06 4.68e-06 1.84e-06 8.59e-06 2.23e-06 2.31e-06 1.55e-06 4.94e-06 5.88e-06 2.58e-06 4.38e-07 7.39e-07 2.15e-06 2.03e-06 1.16e-06 1.08e-06 4.36e-07 9.69e-07 5.9e-07 6.13e-07 7.28e-06 6.31e-07 1.64e-07 8.03e-07 1.14e-06 1.13e-06 7.06e-07 3.58e-07
ENSG00000142856 ITGB3BP -716047 2.91e-07 1.33e-07 5.35e-08 2.05e-07 9.8e-08 8.21e-08 1.73e-07 5.66e-08 1.5e-07 6.4e-08 1.73e-07 1.08e-07 1.87e-07 7.64e-08 5.98e-08 7.74e-08 4.31e-08 1.51e-07 6.75e-08 4.92e-08 1.25e-07 1.25e-07 1.5e-07 3.17e-08 1.68e-07 1.26e-07 1.13e-07 1.01e-07 1.24e-07 1.05e-07 1.07e-07 3.39e-08 3.73e-08 8.89e-08 3.81e-08 2.99e-08 5.35e-08 8.89e-08 6.3e-08 3.99e-08 4.92e-08 1.48e-07 5.27e-08 7.43e-09 3.2e-08 1.8e-08 1.2e-07 1.89e-09 5.01e-08