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Genes within 1Mb (chr1:62850012:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -743399 sc-eQTL 4.14e-01 0.0635 0.0777 0.594 B L1
ENSG00000088035 ALG6 -517563 sc-eQTL 9.86e-01 -0.00142 0.0806 0.594 B L1
ENSG00000116641 DOCK7 161626 sc-eQTL 7.28e-01 -0.028 0.0806 0.594 B L1
ENSG00000125703 ATG4C 65880 sc-eQTL 2.97e-01 0.0584 0.0559 0.594 B L1
ENSG00000142856 ITGB3BP -743709 sc-eQTL 2.59e-01 -0.101 0.0889 0.594 B L1
ENSG00000162607 USP1 413715 sc-eQTL 9.25e-01 0.00733 0.0774 0.594 B L1
ENSG00000203965 EFCAB7 -673360 sc-eQTL 1.05e-01 -0.148 0.0908 0.594 B L1
ENSG00000079739 PGM1 -743399 sc-eQTL 9.61e-01 0.00328 0.0667 0.594 CD4T L1
ENSG00000088035 ALG6 -517563 sc-eQTL 7.98e-01 -0.0189 0.0736 0.594 CD4T L1
ENSG00000116641 DOCK7 161626 sc-eQTL 6.57e-01 0.0331 0.0745 0.594 CD4T L1
ENSG00000125703 ATG4C 65880 sc-eQTL 9.17e-01 0.00626 0.0602 0.594 CD4T L1
ENSG00000142856 ITGB3BP -743709 sc-eQTL 4.02e-01 0.0716 0.0853 0.594 CD4T L1
ENSG00000162607 USP1 413715 sc-eQTL 6.97e-01 0.0227 0.0583 0.594 CD4T L1
ENSG00000203965 EFCAB7 -673360 sc-eQTL 6.98e-02 0.139 0.0761 0.594 CD4T L1
ENSG00000079739 PGM1 -743399 sc-eQTL 7.59e-01 0.0227 0.0739 0.594 CD8T L1
ENSG00000088035 ALG6 -517563 sc-eQTL 6.95e-01 -0.032 0.0815 0.594 CD8T L1
ENSG00000116641 DOCK7 161626 sc-eQTL 8.24e-01 -0.0184 0.0826 0.594 CD8T L1
ENSG00000125703 ATG4C 65880 sc-eQTL 3.36e-02 0.166 0.0776 0.594 CD8T L1
ENSG00000142856 ITGB3BP -743709 sc-eQTL 7.32e-01 0.03 0.0877 0.594 CD8T L1
ENSG00000162607 USP1 413715 sc-eQTL 4.42e-01 -0.0525 0.0682 0.594 CD8T L1
ENSG00000203965 EFCAB7 -673360 sc-eQTL 3.95e-01 0.0744 0.0873 0.594 CD8T L1
ENSG00000079739 PGM1 -743399 sc-eQTL 4.90e-01 -0.0568 0.0821 0.592 DC L1
ENSG00000088035 ALG6 -517563 sc-eQTL 8.68e-01 0.0141 0.0848 0.592 DC L1
ENSG00000116641 DOCK7 161626 sc-eQTL 8.74e-01 0.0137 0.0869 0.592 DC L1
ENSG00000125703 ATG4C 65880 sc-eQTL 7.85e-01 -0.0186 0.068 0.592 DC L1
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.49e-01 -0.0182 0.0951 0.592 DC L1
ENSG00000162607 USP1 413715 sc-eQTL 6.48e-01 0.0379 0.083 0.592 DC L1
ENSG00000203965 EFCAB7 -673360 sc-eQTL 5.00e-01 -0.0558 0.0827 0.592 DC L1
ENSG00000079739 PGM1 -743399 sc-eQTL 3.09e-01 0.0818 0.0802 0.594 Mono L1
ENSG00000088035 ALG6 -517563 sc-eQTL 1.22e-01 -0.13 0.0834 0.594 Mono L1
ENSG00000116641 DOCK7 161626 sc-eQTL 3.43e-01 0.0769 0.0809 0.594 Mono L1
ENSG00000125703 ATG4C 65880 sc-eQTL 1.82e-01 0.0731 0.0546 0.594 Mono L1
ENSG00000142856 ITGB3BP -743709 sc-eQTL 4.71e-01 0.0625 0.0865 0.594 Mono L1
ENSG00000162607 USP1 413715 sc-eQTL 3.90e-01 -0.0611 0.071 0.594 Mono L1
ENSG00000240563 L1TD1 655163 sc-eQTL 5.07e-01 -0.0441 0.0663 0.594 Mono L1
ENSG00000079739 PGM1 -743399 sc-eQTL 3.19e-01 0.069 0.0691 0.594 NK L1
ENSG00000088035 ALG6 -517563 sc-eQTL 8.88e-01 -0.0115 0.0812 0.594 NK L1
ENSG00000116641 DOCK7 161626 sc-eQTL 5.53e-02 0.128 0.0663 0.594 NK L1
ENSG00000125703 ATG4C 65880 sc-eQTL 8.79e-01 -0.0109 0.0718 0.594 NK L1
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.91e-01 0.0123 0.0893 0.594 NK L1
ENSG00000162607 USP1 413715 sc-eQTL 8.06e-01 -0.0196 0.0798 0.594 NK L1
ENSG00000203965 EFCAB7 -673360 sc-eQTL 9.35e-01 -0.0079 0.0969 0.594 NK L1
ENSG00000079739 PGM1 -743399 sc-eQTL 3.20e-01 -0.0779 0.0781 0.594 Other_T L1
ENSG00000088035 ALG6 -517563 sc-eQTL 2.30e-01 0.0943 0.0783 0.594 Other_T L1
ENSG00000116641 DOCK7 161626 sc-eQTL 9.29e-01 0.00721 0.0802 0.594 Other_T L1
ENSG00000125703 ATG4C 65880 sc-eQTL 2.07e-03 0.212 0.0679 0.594 Other_T L1
ENSG00000142856 ITGB3BP -743709 sc-eQTL 2.76e-01 -0.0671 0.0614 0.594 Other_T L1
ENSG00000162607 USP1 413715 sc-eQTL 8.07e-01 -0.0131 0.0534 0.594 Other_T L1
ENSG00000203965 EFCAB7 -673360 sc-eQTL 2.83e-01 0.102 0.0948 0.594 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -743399 sc-eQTL 5.85e-01 -0.0589 0.108 0.592 B_Activated L2
ENSG00000088035 ALG6 -517563 sc-eQTL 3.90e-01 -0.0886 0.103 0.592 B_Activated L2
ENSG00000116641 DOCK7 161626 sc-eQTL 8.41e-01 0.0193 0.096 0.592 B_Activated L2
ENSG00000125703 ATG4C 65880 sc-eQTL 5.45e-01 -0.0611 0.101 0.592 B_Activated L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.04e-02 -0.172 0.0978 0.592 B_Activated L2
ENSG00000162607 USP1 413715 sc-eQTL 9.25e-01 -0.0101 0.107 0.592 B_Activated L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 6.75e-01 0.0392 0.0933 0.592 B_Activated L2
ENSG00000079739 PGM1 -743399 sc-eQTL 6.75e-01 -0.04 0.0952 0.594 B_Intermediate L2
ENSG00000088035 ALG6 -517563 sc-eQTL 6.56e-01 -0.0431 0.0967 0.594 B_Intermediate L2
ENSG00000116641 DOCK7 161626 sc-eQTL 5.26e-01 0.0586 0.0923 0.594 B_Intermediate L2
ENSG00000125703 ATG4C 65880 sc-eQTL 6.83e-01 -0.032 0.0782 0.594 B_Intermediate L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.96e-01 0.0122 0.0932 0.594 B_Intermediate L2
ENSG00000162607 USP1 413715 sc-eQTL 5.16e-01 0.0605 0.0929 0.594 B_Intermediate L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 1.02e-01 -0.151 0.0917 0.594 B_Intermediate L2
ENSG00000079739 PGM1 -743399 sc-eQTL 7.90e-01 -0.0247 0.0928 0.593 B_Memory L2
ENSG00000088035 ALG6 -517563 sc-eQTL 4.20e-01 -0.0761 0.0943 0.593 B_Memory L2
ENSG00000116641 DOCK7 161626 sc-eQTL 7.29e-01 0.0307 0.0885 0.593 B_Memory L2
ENSG00000125703 ATG4C 65880 sc-eQTL 6.07e-01 -0.0433 0.0841 0.593 B_Memory L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 9.09e-01 -0.011 0.0963 0.593 B_Memory L2
ENSG00000162607 USP1 413715 sc-eQTL 2.36e-01 0.115 0.0968 0.593 B_Memory L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 7.59e-01 -0.0293 0.0956 0.593 B_Memory L2
ENSG00000079739 PGM1 -743399 sc-eQTL 6.19e-01 0.0465 0.0934 0.594 B_Naive1 L2
ENSG00000088035 ALG6 -517563 sc-eQTL 2.39e-01 0.11 0.0935 0.594 B_Naive1 L2
ENSG00000116641 DOCK7 161626 sc-eQTL 2.08e-01 -0.113 0.0895 0.594 B_Naive1 L2
ENSG00000125703 ATG4C 65880 sc-eQTL 3.29e-02 0.147 0.0685 0.594 B_Naive1 L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.78e-01 -0.081 0.0917 0.594 B_Naive1 L2
ENSG00000162607 USP1 413715 sc-eQTL 1.45e-01 -0.118 0.0803 0.594 B_Naive1 L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 1.54e-01 -0.14 0.0975 0.594 B_Naive1 L2
ENSG00000079739 PGM1 -743399 sc-eQTL 2.82e-01 0.0995 0.0923 0.594 B_Naive2 L2
ENSG00000088035 ALG6 -517563 sc-eQTL 3.95e-01 -0.0821 0.0963 0.594 B_Naive2 L2
ENSG00000116641 DOCK7 161626 sc-eQTL 8.75e-01 0.0147 0.0928 0.594 B_Naive2 L2
ENSG00000125703 ATG4C 65880 sc-eQTL 6.67e-01 0.0385 0.0893 0.594 B_Naive2 L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 9.65e-01 -0.00421 0.0969 0.594 B_Naive2 L2
ENSG00000162607 USP1 413715 sc-eQTL 8.81e-01 0.0138 0.0922 0.594 B_Naive2 L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 6.84e-01 -0.0393 0.0964 0.594 B_Naive2 L2
ENSG00000079739 PGM1 -743399 sc-eQTL 6.06e-02 -0.174 0.0921 0.589 CD4_CTL L2
ENSG00000088035 ALG6 -517563 sc-eQTL 6.00e-01 0.0515 0.0982 0.589 CD4_CTL L2
ENSG00000116641 DOCK7 161626 sc-eQTL 1.25e-01 0.132 0.0854 0.589 CD4_CTL L2
ENSG00000125703 ATG4C 65880 sc-eQTL 6.55e-01 0.0398 0.0888 0.589 CD4_CTL L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 9.64e-02 0.158 0.0944 0.589 CD4_CTL L2
ENSG00000162607 USP1 413715 sc-eQTL 9.39e-01 -0.00694 0.0904 0.589 CD4_CTL L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 3.02e-01 -0.0932 0.09 0.589 CD4_CTL L2
ENSG00000079739 PGM1 -743399 sc-eQTL 5.68e-01 0.0428 0.0747 0.594 CD4_Naive L2
ENSG00000088035 ALG6 -517563 sc-eQTL 6.88e-01 0.0326 0.0812 0.594 CD4_Naive L2
ENSG00000116641 DOCK7 161626 sc-eQTL 7.52e-01 -0.0252 0.0798 0.594 CD4_Naive L2
ENSG00000125703 ATG4C 65880 sc-eQTL 8.41e-01 -0.0142 0.0705 0.594 CD4_Naive L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 9.90e-01 0.00105 0.0862 0.594 CD4_Naive L2
ENSG00000162607 USP1 413715 sc-eQTL 4.75e-01 0.0471 0.0658 0.594 CD4_Naive L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 8.44e-03 0.224 0.0842 0.594 CD4_Naive L2
ENSG00000079739 PGM1 -743399 sc-eQTL 9.35e-01 -0.00638 0.0781 0.594 CD4_TCM L2
ENSG00000088035 ALG6 -517563 sc-eQTL 1.05e-01 -0.147 0.0902 0.594 CD4_TCM L2
ENSG00000116641 DOCK7 161626 sc-eQTL 9.52e-01 -0.00487 0.0804 0.594 CD4_TCM L2
ENSG00000125703 ATG4C 65880 sc-eQTL 6.11e-01 0.0398 0.0782 0.594 CD4_TCM L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 2.62e-01 0.103 0.092 0.594 CD4_TCM L2
ENSG00000162607 USP1 413715 sc-eQTL 9.82e-01 0.00166 0.0757 0.594 CD4_TCM L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 3.90e-01 0.0769 0.0892 0.594 CD4_TCM L2
ENSG00000079739 PGM1 -743399 sc-eQTL 9.58e-01 -0.00488 0.0921 0.594 CD4_TEM L2
ENSG00000088035 ALG6 -517563 sc-eQTL 3.44e-01 -0.0877 0.0924 0.594 CD4_TEM L2
ENSG00000116641 DOCK7 161626 sc-eQTL 9.71e-01 -0.00329 0.0903 0.594 CD4_TEM L2
ENSG00000125703 ATG4C 65880 sc-eQTL 8.80e-01 0.0132 0.0877 0.594 CD4_TEM L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 6.39e-01 0.0425 0.0904 0.594 CD4_TEM L2
ENSG00000162607 USP1 413715 sc-eQTL 5.42e-01 0.0524 0.0856 0.594 CD4_TEM L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 1.28e-01 -0.143 0.0932 0.594 CD4_TEM L2
ENSG00000079739 PGM1 -743399 sc-eQTL 1.57e-01 0.12 0.0843 0.594 CD8_CTL L2
ENSG00000088035 ALG6 -517563 sc-eQTL 3.73e-01 -0.0802 0.0898 0.594 CD8_CTL L2
ENSG00000116641 DOCK7 161626 sc-eQTL 3.42e-01 0.0813 0.0852 0.594 CD8_CTL L2
ENSG00000125703 ATG4C 65880 sc-eQTL 4.13e-02 0.185 0.09 0.594 CD8_CTL L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.29e-01 -0.0204 0.0945 0.594 CD8_CTL L2
ENSG00000162607 USP1 413715 sc-eQTL 8.06e-01 0.0208 0.0847 0.594 CD8_CTL L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 2.09e-01 0.122 0.0965 0.594 CD8_CTL L2
ENSG00000079739 PGM1 -743399 sc-eQTL 6.27e-01 0.0418 0.0857 0.594 CD8_Naive L2
ENSG00000088035 ALG6 -517563 sc-eQTL 4.74e-01 -0.0636 0.0887 0.594 CD8_Naive L2
ENSG00000116641 DOCK7 161626 sc-eQTL 6.39e-02 -0.17 0.0911 0.594 CD8_Naive L2
ENSG00000125703 ATG4C 65880 sc-eQTL 1.16e-01 0.138 0.0876 0.594 CD8_Naive L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.32e-01 0.0189 0.0892 0.594 CD8_Naive L2
ENSG00000162607 USP1 413715 sc-eQTL 7.82e-01 -0.0209 0.0754 0.594 CD8_Naive L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 5.22e-01 0.054 0.0841 0.594 CD8_Naive L2
ENSG00000079739 PGM1 -743399 sc-eQTL 3.63e-03 -0.273 0.0928 0.59 CD8_TCM L2
ENSG00000088035 ALG6 -517563 sc-eQTL 6.61e-02 0.176 0.0952 0.59 CD8_TCM L2
ENSG00000116641 DOCK7 161626 sc-eQTL 7.27e-01 0.0328 0.0937 0.59 CD8_TCM L2
ENSG00000125703 ATG4C 65880 sc-eQTL 7.71e-01 -0.0279 0.0958 0.59 CD8_TCM L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 4.87e-01 0.0648 0.093 0.59 CD8_TCM L2
ENSG00000162607 USP1 413715 sc-eQTL 8.88e-01 -0.0127 0.0896 0.59 CD8_TCM L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 3.50e-03 0.274 0.0928 0.59 CD8_TCM L2
ENSG00000079739 PGM1 -743399 sc-eQTL 4.27e-01 0.0784 0.0984 0.603 CD8_TEM L2
ENSG00000088035 ALG6 -517563 sc-eQTL 4.76e-02 0.195 0.098 0.603 CD8_TEM L2
ENSG00000116641 DOCK7 161626 sc-eQTL 9.48e-01 0.00622 0.0959 0.603 CD8_TEM L2
ENSG00000125703 ATG4C 65880 sc-eQTL 7.85e-02 0.162 0.0915 0.603 CD8_TEM L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 6.07e-01 0.0514 0.0998 0.603 CD8_TEM L2
ENSG00000162607 USP1 413715 sc-eQTL 2.45e-01 -0.111 0.0949 0.603 CD8_TEM L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 8.44e-01 -0.0191 0.0968 0.603 CD8_TEM L2
ENSG00000079739 PGM1 -743399 sc-eQTL 1.35e-01 -0.133 0.0888 0.593 MAIT L2
ENSG00000088035 ALG6 -517563 sc-eQTL 9.56e-01 0.00491 0.0884 0.593 MAIT L2
ENSG00000116641 DOCK7 161626 sc-eQTL 6.80e-01 -0.035 0.0847 0.593 MAIT L2
ENSG00000125703 ATG4C 65880 sc-eQTL 1.23e-02 0.222 0.088 0.593 MAIT L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 6.72e-01 -0.0379 0.0894 0.593 MAIT L2
ENSG00000162607 USP1 413715 sc-eQTL 6.22e-01 0.0438 0.0887 0.593 MAIT L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 2.81e-01 0.0994 0.0919 0.593 MAIT L2
ENSG00000079739 PGM1 -743399 sc-eQTL 7.93e-01 -0.0239 0.0908 0.591 NK_CD56bright L2
ENSG00000088035 ALG6 -517563 sc-eQTL 9.07e-01 -0.0109 0.0931 0.591 NK_CD56bright L2
ENSG00000116641 DOCK7 161626 sc-eQTL 4.94e-02 -0.158 0.0799 0.591 NK_CD56bright L2
ENSG00000125703 ATG4C 65880 sc-eQTL 1.27e-01 -0.137 0.0896 0.591 NK_CD56bright L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 9.16e-01 0.00994 0.0938 0.591 NK_CD56bright L2
ENSG00000162607 USP1 413715 sc-eQTL 5.71e-01 0.0549 0.0967 0.591 NK_CD56bright L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 1.41e-01 -0.136 0.0921 0.591 NK_CD56bright L2
ENSG00000079739 PGM1 -743399 sc-eQTL 4.94e-01 -0.0492 0.0718 0.593 NK_CD56dim L2
ENSG00000088035 ALG6 -517563 sc-eQTL 6.24e-01 -0.0447 0.0912 0.593 NK_CD56dim L2
ENSG00000116641 DOCK7 161626 sc-eQTL 1.07e-01 0.128 0.0789 0.593 NK_CD56dim L2
ENSG00000125703 ATG4C 65880 sc-eQTL 6.62e-01 -0.0353 0.0806 0.593 NK_CD56dim L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.53e-01 -0.017 0.0917 0.593 NK_CD56dim L2
ENSG00000162607 USP1 413715 sc-eQTL 8.99e-01 -0.0113 0.089 0.593 NK_CD56dim L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 8.01e-01 0.025 0.0991 0.593 NK_CD56dim L2
ENSG00000079739 PGM1 -743399 sc-eQTL 2.40e-01 0.113 0.0962 0.598 NK_HLA L2
ENSG00000088035 ALG6 -517563 sc-eQTL 2.78e-01 -0.109 0.0998 0.598 NK_HLA L2
ENSG00000116641 DOCK7 161626 sc-eQTL 4.30e-01 0.0605 0.0765 0.598 NK_HLA L2
ENSG00000125703 ATG4C 65880 sc-eQTL 1.25e-01 0.136 0.0885 0.598 NK_HLA L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.14e-01 0.0221 0.0935 0.598 NK_HLA L2
ENSG00000162607 USP1 413715 sc-eQTL 9.45e-01 0.00673 0.0979 0.598 NK_HLA L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 3.09e-01 0.0905 0.0888 0.598 NK_HLA L2
ENSG00000079739 PGM1 -743399 sc-eQTL 1.64e-01 0.109 0.0777 0.593 NK_cytokine L2
ENSG00000088035 ALG6 -517563 sc-eQTL 8.24e-02 0.153 0.0875 0.593 NK_cytokine L2
ENSG00000116641 DOCK7 161626 sc-eQTL 5.87e-02 0.154 0.081 0.593 NK_cytokine L2
ENSG00000125703 ATG4C 65880 sc-eQTL 7.10e-01 0.0311 0.0835 0.593 NK_cytokine L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.15e-01 -0.0202 0.0865 0.593 NK_cytokine L2
ENSG00000162607 USP1 413715 sc-eQTL 6.74e-01 -0.0384 0.091 0.593 NK_cytokine L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 3.83e-01 0.0805 0.092 0.593 NK_cytokine L2
ENSG00000079739 PGM1 -743399 sc-eQTL 6.88e-01 0.0419 0.104 0.596 PB L2
ENSG00000088035 ALG6 -517563 sc-eQTL 8.15e-01 -0.0257 0.109 0.596 PB L2
ENSG00000116641 DOCK7 161626 sc-eQTL 8.57e-01 -0.0212 0.117 0.596 PB L2
ENSG00000125703 ATG4C 65880 sc-eQTL 4.63e-01 0.075 0.102 0.596 PB L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 7.89e-01 -0.0273 0.102 0.596 PB L2
ENSG00000162607 USP1 413715 sc-eQTL 8.09e-01 0.0245 0.101 0.596 PB L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 5.98e-01 0.0591 0.112 0.596 PB L2
ENSG00000079739 PGM1 -743399 sc-eQTL 7.46e-01 0.0274 0.0844 0.593 Pro_T L2
ENSG00000088035 ALG6 -517563 sc-eQTL 7.28e-01 0.0299 0.0859 0.593 Pro_T L2
ENSG00000116641 DOCK7 161626 sc-eQTL 2.24e-01 0.105 0.0859 0.593 Pro_T L2
ENSG00000125703 ATG4C 65880 sc-eQTL 6.12e-01 0.0384 0.0754 0.593 Pro_T L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.34e-02 -0.16 0.0749 0.593 Pro_T L2
ENSG00000162607 USP1 413715 sc-eQTL 7.15e-01 0.019 0.052 0.593 Pro_T L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 1.08e-01 0.141 0.0874 0.593 Pro_T L2
ENSG00000079739 PGM1 -743399 sc-eQTL 8.81e-01 0.0135 0.0897 0.594 Treg L2
ENSG00000088035 ALG6 -517563 sc-eQTL 8.43e-01 0.019 0.0959 0.594 Treg L2
ENSG00000116641 DOCK7 161626 sc-eQTL 7.83e-01 0.0243 0.088 0.594 Treg L2
ENSG00000125703 ATG4C 65880 sc-eQTL 8.20e-01 0.0205 0.0899 0.594 Treg L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 2.77e-01 0.102 0.0938 0.594 Treg L2
ENSG00000162607 USP1 413715 sc-eQTL 6.61e-01 -0.04 0.091 0.594 Treg L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 9.40e-01 0.00675 0.09 0.594 Treg L2
ENSG00000079739 PGM1 -743399 sc-eQTL 4.46e-01 -0.0674 0.0883 0.59 cDC L2
ENSG00000088035 ALG6 -517563 sc-eQTL 4.65e-02 -0.178 0.0887 0.59 cDC L2
ENSG00000116641 DOCK7 161626 sc-eQTL 4.12e-01 0.0721 0.0878 0.59 cDC L2
ENSG00000125703 ATG4C 65880 sc-eQTL 4.95e-01 -0.0521 0.0763 0.59 cDC L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 7.56e-01 0.0301 0.0968 0.59 cDC L2
ENSG00000162607 USP1 413715 sc-eQTL 6.88e-01 0.0346 0.0862 0.59 cDC L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 8.55e-01 0.0142 0.0778 0.59 cDC L2
ENSG00000079739 PGM1 -743399 sc-eQTL 1.99e-01 0.107 0.0828 0.594 cMono_IL1B L2
ENSG00000088035 ALG6 -517563 sc-eQTL 7.67e-02 -0.147 0.0826 0.594 cMono_IL1B L2
ENSG00000116641 DOCK7 161626 sc-eQTL 5.17e-01 0.057 0.0877 0.594 cMono_IL1B L2
ENSG00000125703 ATG4C 65880 sc-eQTL 4.02e-01 0.0517 0.0616 0.594 cMono_IL1B L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 5.13e-01 0.0572 0.0874 0.594 cMono_IL1B L2
ENSG00000162607 USP1 413715 sc-eQTL 5.46e-01 -0.0466 0.0771 0.594 cMono_IL1B L2
ENSG00000240563 L1TD1 655163 sc-eQTL 8.30e-01 -0.0167 0.0775 0.594 cMono_IL1B L2
ENSG00000079739 PGM1 -743399 sc-eQTL 4.40e-01 0.0711 0.0919 0.594 cMono_S100A L2
ENSG00000088035 ALG6 -517563 sc-eQTL 2.82e-01 -0.1 0.093 0.594 cMono_S100A L2
ENSG00000116641 DOCK7 161626 sc-eQTL 7.35e-01 0.0293 0.0864 0.594 cMono_S100A L2
ENSG00000125703 ATG4C 65880 sc-eQTL 4.71e-01 0.0539 0.0747 0.594 cMono_S100A L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.81e-01 0.0739 0.0843 0.594 cMono_S100A L2
ENSG00000162607 USP1 413715 sc-eQTL 6.22e-01 -0.0428 0.0868 0.594 cMono_S100A L2
ENSG00000240563 L1TD1 655163 sc-eQTL 5.60e-01 0.0422 0.0722 0.594 cMono_S100A L2
ENSG00000079739 PGM1 -743399 sc-eQTL 3.70e-01 -0.0952 0.106 0.594 gdT L2
ENSG00000088035 ALG6 -517563 sc-eQTL 4.58e-01 -0.0842 0.113 0.594 gdT L2
ENSG00000116641 DOCK7 161626 sc-eQTL 5.10e-01 0.0734 0.111 0.594 gdT L2
ENSG00000125703 ATG4C 65880 sc-eQTL 4.36e-01 -0.0827 0.106 0.594 gdT L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.91e-01 -0.0968 0.112 0.594 gdT L2
ENSG00000162607 USP1 413715 sc-eQTL 2.20e-01 -0.131 0.106 0.594 gdT L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 9.00e-01 -0.0139 0.111 0.594 gdT L2
ENSG00000079739 PGM1 -743399 sc-eQTL 5.38e-01 0.0563 0.0913 0.596 intMono L2
ENSG00000088035 ALG6 -517563 sc-eQTL 4.54e-01 0.0639 0.085 0.596 intMono L2
ENSG00000116641 DOCK7 161626 sc-eQTL 5.11e-01 0.0572 0.0869 0.596 intMono L2
ENSG00000125703 ATG4C 65880 sc-eQTL 8.58e-01 -0.0149 0.083 0.596 intMono L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 6.31e-01 0.0439 0.0914 0.596 intMono L2
ENSG00000162607 USP1 413715 sc-eQTL 5.22e-01 -0.0596 0.0929 0.596 intMono L2
ENSG00000240563 L1TD1 655163 sc-eQTL 4.09e-01 -0.0565 0.0683 0.596 intMono L2
ENSG00000079739 PGM1 -743399 sc-eQTL 7.67e-01 -0.0253 0.0852 0.6 ncMono L2
ENSG00000088035 ALG6 -517563 sc-eQTL 3.53e-01 0.0869 0.0934 0.6 ncMono L2
ENSG00000116641 DOCK7 161626 sc-eQTL 9.77e-01 -0.00261 0.0921 0.6 ncMono L2
ENSG00000125703 ATG4C 65880 sc-eQTL 3.17e-01 0.086 0.0859 0.6 ncMono L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.48e-01 0.0845 0.0898 0.6 ncMono L2
ENSG00000162607 USP1 413715 sc-eQTL 8.26e-01 -0.0202 0.092 0.6 ncMono L2
ENSG00000240563 L1TD1 655163 sc-eQTL 3.27e-01 -0.064 0.0651 0.6 ncMono L2
ENSG00000079739 PGM1 -743399 sc-eQTL 5.27e-01 -0.0643 0.101 0.593 pDC L2
ENSG00000088035 ALG6 -517563 sc-eQTL 4.35e-02 0.198 0.0975 0.593 pDC L2
ENSG00000116641 DOCK7 161626 sc-eQTL 7.12e-01 -0.0373 0.101 0.593 pDC L2
ENSG00000125703 ATG4C 65880 sc-eQTL 3.98e-01 0.0766 0.0903 0.593 pDC L2
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.27e-02 -0.176 0.101 0.593 pDC L2
ENSG00000162607 USP1 413715 sc-eQTL 2.39e-01 0.122 0.103 0.593 pDC L2
ENSG00000203965 EFCAB7 -673360 sc-eQTL 8.04e-01 -0.0224 0.0899 0.593 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -743399 sc-eQTL 5.88e-01 -0.0478 0.0881 0.594 B_Memory LOneK1K
ENSG00000088035 ALG6 -517563 sc-eQTL 2.61e-01 -0.11 0.0972 0.594 B_Memory LOneK1K
ENSG00000116641 DOCK7 161626 sc-eQTL 2.53e-01 0.0967 0.0844 0.594 B_Memory LOneK1K
ENSG00000125703 ATG4C 65880 sc-eQTL 4.76e-01 -0.0488 0.0683 0.594 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -743709 sc-eQTL 5.18e-01 -0.0581 0.0898 0.594 B_Memory LOneK1K
ENSG00000162607 USP1 413715 sc-eQTL 1.57e-01 0.123 0.0869 0.594 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -673360 sc-eQTL 2.28e-01 -0.113 0.0934 0.594 B_Memory LOneK1K
ENSG00000079739 PGM1 -743399 sc-eQTL 3.65e-01 0.0822 0.0905 0.594 B_Naive LOneK1K
ENSG00000088035 ALG6 -517563 sc-eQTL 4.08e-01 0.0773 0.0932 0.594 B_Naive LOneK1K
ENSG00000116641 DOCK7 161626 sc-eQTL 4.51e-01 -0.0657 0.0871 0.594 B_Naive LOneK1K
ENSG00000125703 ATG4C 65880 sc-eQTL 1.45e-02 0.162 0.0656 0.594 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.97e-01 -0.0798 0.0939 0.594 B_Naive LOneK1K
ENSG00000162607 USP1 413715 sc-eQTL 3.36e-01 -0.0778 0.0806 0.594 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -673360 sc-eQTL 2.16e-01 -0.117 0.0942 0.594 B_Naive LOneK1K
ENSG00000079739 PGM1 -743399 sc-eQTL 2.94e-01 0.089 0.0845 0.594 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -517563 sc-eQTL 6.10e-02 -0.153 0.0814 0.594 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 161626 sc-eQTL 4.91e-01 0.0569 0.0825 0.594 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 65880 sc-eQTL 1.95e-01 0.074 0.0569 0.594 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.40e-01 0.0807 0.0843 0.594 CD14_Mono LOneK1K
ENSG00000162607 USP1 413715 sc-eQTL 3.58e-01 -0.0664 0.072 0.594 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 655163 sc-eQTL 7.54e-01 0.0246 0.0782 0.594 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -743399 sc-eQTL 5.17e-01 0.0525 0.0807 0.595 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -517563 sc-eQTL 2.01e-01 0.117 0.0914 0.595 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 161626 sc-eQTL 8.19e-01 0.0208 0.0908 0.595 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 65880 sc-eQTL 6.76e-01 0.0324 0.0774 0.595 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -743709 sc-eQTL 3.20e-01 0.0894 0.0897 0.595 CD16_Mono LOneK1K
ENSG00000162607 USP1 413715 sc-eQTL 2.53e-01 -0.0965 0.0842 0.595 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 655163 sc-eQTL 1.10e-01 -0.0919 0.0572 0.595 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -743399 sc-eQTL 3.54e-01 0.0653 0.0702 0.593 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -517563 sc-eQTL 9.44e-01 0.00591 0.0845 0.593 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 161626 sc-eQTL 8.62e-03 0.197 0.0745 0.593 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 65880 sc-eQTL 9.55e-01 -0.00429 0.0756 0.593 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -743709 sc-eQTL 8.89e-01 0.0125 0.0896 0.593 NK_CD56dim LOneK1K
ENSG00000162607 USP1 413715 sc-eQTL 5.02e-01 -0.0547 0.0812 0.593 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -673360 sc-eQTL 5.06e-01 0.0659 0.0988 0.593 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 161644 eQTL 8.41e-11 0.142 0.0216 0.0 0.0 0.384
ENSG00000125703 ATG4C 65880 eQTL 5.69e-05 0.0671 0.0166 0.00151 0.00176 0.384
ENSG00000132855 ANGPTL3 252525 pQTL 0.00179 0.0912 0.0291 0.0 0.0 0.391
ENSG00000142856 ITGB3BP -743709 eQTL 0.0024 -0.0884 0.0291 0.0 0.0 0.384
ENSG00000162607 USP1 413715 eQTL 0.00084 0.0427 0.0128 0.0 0.0 0.384

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 161644 4.33e-06 4.91e-06 7.29e-07 2.61e-06 1.54e-06 1.19e-06 4.36e-06 1.18e-06 5.14e-06 2.44e-06 4.69e-06 3.52e-06 7.2e-06 2.35e-06 1.31e-06 4.06e-06 2e-06 3.39e-06 1.55e-06 1.4e-06 2.75e-06 4.9e-06 4.13e-06 1.49e-06 5.95e-06 2.21e-06 2.31e-06 1.65e-06 4.41e-06 4.12e-06 2.53e-06 4.44e-07 7.36e-07 1.61e-06 2.03e-06 1.13e-06 1.04e-06 4.24e-07 8.52e-07 7.21e-07 9.87e-07 5.7e-06 3.81e-07 1.59e-07 7.75e-07 9.32e-07 1.04e-06 4.27e-07 5.65e-07
ENSG00000125703 ATG4C 65880 9.21e-06 1.01e-05 2.2e-06 6.69e-06 2.47e-06 4.55e-06 1.24e-05 2.39e-06 1.05e-05 5.58e-06 1.29e-05 5.73e-06 1.83e-05 3.6e-06 3.49e-06 8.04e-06 4.98e-06 9.51e-06 3.64e-06 3.8e-06 6.47e-06 1.08e-05 1.02e-05 4.2e-06 1.81e-05 4.9e-06 7.16e-06 5.32e-06 1.37e-05 1.02e-05 6.24e-06 9.89e-07 1.47e-06 4.07e-06 4.89e-06 3.58e-06 2.02e-06 2.09e-06 2.73e-06 2.03e-06 1.72e-06 1.36e-05 1.38e-06 3.73e-07 1.6e-06 2.14e-06 1.96e-06 6.86e-07 1.1e-06
ENSG00000142856 ITGB3BP -743709 4.37e-07 2.56e-07 8.67e-08 2.53e-07 1.08e-07 1.03e-07 3.7e-07 8.11e-08 2.56e-07 1.37e-07 2.84e-07 1.96e-07 3.95e-07 8.26e-08 1.18e-07 1.61e-07 8.53e-08 2.9e-07 9.19e-08 7.84e-08 1.59e-07 2.45e-07 2.11e-07 4.81e-08 3.55e-07 2.29e-07 1.74e-07 1.95e-07 2.03e-07 1.81e-07 1.71e-07 5.38e-08 5.07e-08 1.01e-07 1.01e-07 5.32e-08 6.67e-08 7.1e-08 4.9e-08 5.88e-08 8.55e-08 2.71e-07 3.02e-08 1.07e-08 8.06e-08 1.03e-08 8.21e-08 2.2e-09 5.69e-08