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Genes within 1Mb (chr1:54220181:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -581142 sc-eQTL 3.75e-02 0.385 0.184 0.05 CD4_CTL L2
ENSG00000058799 YIPF1 330383 sc-eQTL 1.03e-01 -0.321 0.196 0.05 CD4_CTL L2
ENSG00000058804 NDC1 381718 sc-eQTL 6.08e-01 0.0997 0.194 0.05 CD4_CTL L2
ENSG00000081870 HSPB11 274252 sc-eQTL 3.90e-01 0.174 0.202 0.05 CD4_CTL L2
ENSG00000116205 TCEANC2 166597 sc-eQTL 5.33e-01 0.119 0.191 0.05 CD4_CTL L2
ENSG00000116209 TMEM59 166677 sc-eQTL 9.65e-02 -0.289 0.173 0.05 CD4_CTL L2
ENSG00000116212 LRRC42 274096 sc-eQTL 2.40e-02 0.433 0.191 0.05 CD4_CTL L2
ENSG00000116221 MRPL37 36140 sc-eQTL 8.03e-03 -0.563 0.21 0.05 CD4_CTL L2
ENSG00000157193 LRP8 891712 sc-eQTL 6.39e-01 -0.0932 0.199 0.05 CD4_CTL L2
ENSG00000157216 SSBP3 -193298 sc-eQTL 9.12e-01 0.0146 0.132 0.05 CD4_CTL L2
ENSG00000162384 CZIB 999547 sc-eQTL 4.69e-01 -0.151 0.208 0.05 CD4_CTL L2
ENSG00000162385 MAGOH 981663 sc-eQTL 8.72e-01 -0.0307 0.19 0.05 CD4_CTL L2
ENSG00000162402 USP24 -995183 sc-eQTL 6.59e-01 0.08 0.181 0.05 CD4_CTL L2
ENSG00000243725 TTC4 -495680 sc-eQTL 6.66e-01 -0.0875 0.202 0.05 CD4_CTL L2
ENSG00000006555 TTC22 -581142 sc-eQTL 8.42e-01 0.038 0.191 0.051 CD8_TCM L2
ENSG00000058799 YIPF1 330383 sc-eQTL 1.35e-01 0.305 0.203 0.051 CD8_TCM L2
ENSG00000058804 NDC1 381718 sc-eQTL 2.37e-01 -0.225 0.189 0.051 CD8_TCM L2
ENSG00000081870 HSPB11 274252 sc-eQTL 6.10e-01 -0.0898 0.176 0.051 CD8_TCM L2
ENSG00000116205 TCEANC2 166597 sc-eQTL 5.95e-01 -0.102 0.192 0.051 CD8_TCM L2
ENSG00000116209 TMEM59 166677 sc-eQTL 1.46e-01 0.245 0.168 0.051 CD8_TCM L2
ENSG00000116212 LRRC42 274096 sc-eQTL 2.86e-01 -0.214 0.2 0.051 CD8_TCM L2
ENSG00000116221 MRPL37 36140 sc-eQTL 6.15e-01 0.0967 0.192 0.051 CD8_TCM L2
ENSG00000157193 LRP8 891712 sc-eQTL 5.17e-01 -0.115 0.178 0.051 CD8_TCM L2
ENSG00000157216 SSBP3 -193298 sc-eQTL 2.63e-02 0.368 0.164 0.051 CD8_TCM L2
ENSG00000162384 CZIB 999547 sc-eQTL 7.03e-02 0.343 0.189 0.051 CD8_TCM L2
ENSG00000162385 MAGOH 981663 sc-eQTL 6.32e-01 -0.0862 0.18 0.051 CD8_TCM L2
ENSG00000162402 USP24 -995183 sc-eQTL 9.20e-01 -0.0162 0.161 0.051 CD8_TCM L2
ENSG00000243725 TTC4 -495680 sc-eQTL 1.94e-01 0.254 0.195 0.051 CD8_TCM L2
ENSG00000006555 TTC22 -581142 sc-eQTL 2.45e-01 0.211 0.181 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 330383 sc-eQTL 2.25e-01 -0.236 0.194 0.05 CD8_TEM L2
ENSG00000058804 NDC1 381718 sc-eQTL 6.35e-01 0.0879 0.185 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 274252 sc-eQTL 8.66e-01 0.0298 0.175 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 166597 sc-eQTL 8.91e-01 -0.0261 0.189 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 166677 sc-eQTL 3.96e-01 0.156 0.183 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 274096 sc-eQTL 5.92e-01 -0.106 0.197 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 36140 sc-eQTL 7.47e-01 -0.0601 0.186 0.05 CD8_TEM L2
ENSG00000157193 LRP8 891712 sc-eQTL 7.09e-01 -0.0691 0.185 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -193298 sc-eQTL 6.37e-01 -0.0829 0.176 0.05 CD8_TEM L2
ENSG00000162384 CZIB 999547 sc-eQTL 2.71e-02 -0.434 0.195 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 981663 sc-eQTL 5.22e-01 0.107 0.167 0.05 CD8_TEM L2
ENSG00000162402 USP24 -995183 sc-eQTL 7.15e-01 -0.0678 0.185 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -495680 sc-eQTL 9.58e-01 -0.00997 0.188 0.05 CD8_TEM L2
ENSG00000006555 TTC22 -581142 sc-eQTL 2.28e-01 -0.232 0.192 0.056 PB L2
ENSG00000058799 YIPF1 330383 sc-eQTL 9.19e-01 -0.0138 0.136 0.056 PB L2
ENSG00000058804 NDC1 381718 sc-eQTL 2.60e-01 -0.227 0.201 0.056 PB L2
ENSG00000081870 HSPB11 274252 sc-eQTL 7.69e-01 0.0502 0.17 0.056 PB L2
ENSG00000116133 DHCR24 -667014 sc-eQTL 2.23e-01 0.209 0.17 0.056 PB L2
ENSG00000116205 TCEANC2 166597 sc-eQTL 1.41e-01 0.306 0.206 0.056 PB L2
ENSG00000116209 TMEM59 166677 sc-eQTL 3.60e-01 -0.0797 0.0868 0.056 PB L2
ENSG00000116212 LRRC42 274096 sc-eQTL 3.78e-03 0.56 0.189 0.056 PB L2
ENSG00000116221 MRPL37 36140 sc-eQTL 6.92e-03 -0.422 0.153 0.056 PB L2
ENSG00000157193 LRP8 891712 sc-eQTL 4.51e-01 0.15 0.199 0.056 PB L2
ENSG00000157216 SSBP3 -193298 sc-eQTL 9.09e-01 -0.021 0.183 0.056 PB L2
ENSG00000162384 CZIB 999547 sc-eQTL 6.55e-01 -0.093 0.208 0.056 PB L2
ENSG00000162385 MAGOH 981663 sc-eQTL 1.96e-01 0.248 0.191 0.056 PB L2
ENSG00000162402 USP24 -995183 sc-eQTL 1.65e-01 -0.288 0.206 0.056 PB L2
ENSG00000215883 CYB5RL 20145 sc-eQTL 9.12e-01 -0.0237 0.215 0.056 PB L2
ENSG00000230138 LINC02812 851936 sc-eQTL 8.63e-01 -0.0267 0.155 0.056 PB L2
ENSG00000243725 TTC4 -495680 sc-eQTL 4.01e-01 -0.169 0.2 0.056 PB L2
ENSG00000006555 TTC22 -581142 sc-eQTL 3.91e-01 -0.147 0.171 0.05 Pro_T L2
ENSG00000058799 YIPF1 330383 sc-eQTL 3.99e-01 0.137 0.162 0.05 Pro_T L2
ENSG00000058804 NDC1 381718 sc-eQTL 1.72e-01 -0.175 0.128 0.05 Pro_T L2
ENSG00000081870 HSPB11 274252 sc-eQTL 3.91e-01 -0.0991 0.115 0.05 Pro_T L2
ENSG00000116133 DHCR24 -667014 sc-eQTL 4.46e-01 0.111 0.145 0.05 Pro_T L2
ENSG00000116205 TCEANC2 166597 sc-eQTL 2.57e-01 0.201 0.177 0.05 Pro_T L2
ENSG00000116209 TMEM59 166677 sc-eQTL 9.91e-01 0.00144 0.123 0.05 Pro_T L2
ENSG00000116212 LRRC42 274096 sc-eQTL 3.47e-01 -0.149 0.158 0.05 Pro_T L2
ENSG00000116221 MRPL37 36140 sc-eQTL 8.91e-02 -0.205 0.12 0.05 Pro_T L2
ENSG00000157193 LRP8 891712 sc-eQTL 3.02e-01 0.171 0.165 0.05 Pro_T L2
ENSG00000157216 SSBP3 -193298 sc-eQTL 8.96e-01 -0.0177 0.135 0.05 Pro_T L2
ENSG00000162384 CZIB 999547 sc-eQTL 6.43e-01 -0.0867 0.187 0.05 Pro_T L2
ENSG00000162385 MAGOH 981663 sc-eQTL 4.23e-02 -0.306 0.15 0.05 Pro_T L2
ENSG00000162402 USP24 -995183 sc-eQTL 3.22e-01 0.164 0.165 0.05 Pro_T L2
ENSG00000215883 CYB5RL 20145 sc-eQTL 2.96e-01 0.17 0.163 0.05 Pro_T L2
ENSG00000243725 TTC4 -495680 sc-eQTL 8.72e-01 0.0292 0.181 0.05 Pro_T L2
ENSG00000058799 YIPF1 330383 sc-eQTL 4.06e-01 -0.156 0.188 0.051 cDC L2
ENSG00000058804 NDC1 381718 sc-eQTL 3.89e-01 0.164 0.19 0.051 cDC L2
ENSG00000081870 HSPB11 274252 sc-eQTL 9.73e-01 -0.00685 0.201 0.051 cDC L2
ENSG00000116133 DHCR24 -667014 sc-eQTL 6.50e-01 -0.0708 0.156 0.051 cDC L2
ENSG00000116205 TCEANC2 166597 sc-eQTL 3.47e-01 -0.173 0.183 0.051 cDC L2
ENSG00000116209 TMEM59 166677 sc-eQTL 7.19e-01 -0.0563 0.156 0.051 cDC L2
ENSG00000116212 LRRC42 274096 sc-eQTL 9.02e-01 -0.0234 0.191 0.051 cDC L2
ENSG00000116221 MRPL37 36140 sc-eQTL 9.78e-01 -0.00558 0.2 0.051 cDC L2
ENSG00000157193 LRP8 891712 sc-eQTL 2.59e-01 -0.224 0.198 0.051 cDC L2
ENSG00000157216 SSBP3 -193298 sc-eQTL 5.42e-01 0.112 0.184 0.051 cDC L2
ENSG00000162384 CZIB 999547 sc-eQTL 1.60e-01 0.255 0.18 0.051 cDC L2
ENSG00000162385 MAGOH 981663 sc-eQTL 5.12e-01 0.109 0.166 0.051 cDC L2
ENSG00000162390 ACOT11 -322076 sc-eQTL 1.37e-01 0.254 0.17 0.051 cDC L2
ENSG00000162402 USP24 -995183 sc-eQTL 3.69e-01 0.173 0.192 0.051 cDC L2
ENSG00000215883 CYB5RL 20145 sc-eQTL 1.92e-01 -0.215 0.164 0.051 cDC L2
ENSG00000230138 LINC02812 851936 sc-eQTL 3.63e-01 -0.155 0.17 0.051 cDC L2
ENSG00000243725 TTC4 -495680 sc-eQTL 2.16e-02 -0.45 0.194 0.051 cDC L2
ENSG00000058799 YIPF1 330383 sc-eQTL 3.52e-01 -0.18 0.193 0.052 ncMono L2
ENSG00000058804 NDC1 381718 sc-eQTL 7.49e-01 -0.0613 0.191 0.052 ncMono L2
ENSG00000081870 HSPB11 274252 sc-eQTL 7.72e-01 0.0589 0.203 0.052 ncMono L2
ENSG00000116133 DHCR24 -667014 sc-eQTL 4.39e-01 0.113 0.146 0.052 ncMono L2
ENSG00000116205 TCEANC2 166597 sc-eQTL 5.51e-01 0.109 0.182 0.052 ncMono L2
ENSG00000116209 TMEM59 166677 sc-eQTL 3.60e-01 0.134 0.146 0.052 ncMono L2
ENSG00000116212 LRRC42 274096 sc-eQTL 8.26e-01 0.0438 0.199 0.052 ncMono L2
ENSG00000116221 MRPL37 36140 sc-eQTL 8.28e-01 -0.0409 0.188 0.052 ncMono L2
ENSG00000157193 LRP8 891712 sc-eQTL 7.70e-01 0.0602 0.205 0.052 ncMono L2
ENSG00000157216 SSBP3 -193298 sc-eQTL 9.99e-02 -0.338 0.204 0.052 ncMono L2
ENSG00000162384 CZIB 999547 sc-eQTL 1.77e-01 0.268 0.197 0.052 ncMono L2
ENSG00000162385 MAGOH 981663 sc-eQTL 5.99e-01 -0.0902 0.172 0.052 ncMono L2
ENSG00000162402 USP24 -995183 sc-eQTL 2.40e-01 0.193 0.164 0.052 ncMono L2
ENSG00000243725 TTC4 -495680 sc-eQTL 8.92e-01 0.0264 0.195 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116221 MRPL37 36140 eQTL 7.21e-08 -0.128 0.0235 0.0 0.0 0.0751
ENSG00000157193 LRP8 892111 eQTL 0.0162 0.0928 0.0385 0.0 0.0 0.0751
ENSG00000157216 SSBP3 -193298 eQTL 1.35e-07 -0.133 0.0251 0.0212 0.0199 0.0751
ENSG00000162390 ACOT11 -322076 eQTL 0.0389 0.0877 0.0424 0.0 0.0 0.0751
ENSG00000285954 AC119428.3 876150 eQTL 0.00785 -0.174 0.0652 0.00288 0.0 0.0751

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116133 \N -667014 2.91e-07 3.35e-07 5.91e-08 3.61e-07 9.82e-08 1.19e-07 3.44e-07 5.82e-08 2.75e-07 1.03e-07 5.29e-07 1.96e-07 4.74e-07 9.18e-08 7.98e-08 1.06e-07 5.27e-08 2.56e-07 7.36e-08 5.48e-08 1.27e-07 2.3e-07 1.69e-07 3.17e-08 3.27e-07 1.39e-07 1.57e-07 1.48e-07 1.39e-07 1.89e-07 2.11e-07 3.6e-08 3.73e-08 9.8e-08 4.78e-08 3.43e-08 4.49e-08 8.17e-08 5.8e-08 2.71e-08 5.13e-08 5.09e-07 3.31e-08 2.63e-08 3.48e-08 1.81e-08 1.21e-07 1.88e-09 4.9e-08
ENSG00000116221 MRPL37 36140 2.51e-05 3.22e-05 5.92e-06 1.54e-05 5.16e-06 1.24e-05 4.26e-05 4.86e-06 3.27e-05 1.61e-05 4.51e-05 1.87e-05 5.15e-05 1.4e-05 6.69e-06 1.88e-05 1.61e-05 2.48e-05 6.78e-06 6.34e-06 1.39e-05 3.34e-05 2.73e-05 7.63e-06 4.66e-05 6.74e-06 1.35e-05 1.28e-05 3.05e-05 2.21e-05 2.34e-05 1.63e-06 2.31e-06 6.8e-06 1.11e-05 5.31e-06 2.78e-06 3.16e-06 4.25e-06 3.35e-06 1.72e-06 4.74e-05 3.43e-06 3.73e-07 2.3e-06 4.15e-06 3.77e-06 1.48e-06 1.52e-06
ENSG00000157216 SSBP3 -193298 4.01e-06 7.81e-06 7.09e-07 3.95e-06 9.29e-07 1.67e-06 5.67e-06 1.05e-06 5.67e-06 2.85e-06 1.05e-05 3.52e-06 1.12e-05 2.83e-06 9e-07 3.77e-06 2.43e-06 3.91e-06 1.35e-06 1.21e-06 2.93e-06 6.28e-06 3.72e-06 1.64e-06 9.11e-06 1.32e-06 2.3e-06 1.73e-06 4.43e-06 4.23e-06 4.16e-06 5.58e-07 5.88e-07 1.6e-06 2.13e-06 1.06e-06 9.59e-07 5.28e-07 8.5e-07 8.7e-07 1.96e-07 1.48e-05 5.98e-07 1.35e-07 4.7e-07 9.83e-07 8.69e-07 2.49e-07 1.79e-07
ENSG00000184313 \N -421573 1.01e-06 1.01e-06 2.06e-07 1.33e-06 1.09e-07 4.39e-07 1.16e-06 2.62e-07 1.49e-06 3.28e-07 1.99e-06 6.36e-07 2.12e-06 3e-07 4.61e-07 6.94e-07 7.57e-07 5.75e-07 3.26e-07 3.09e-07 2.93e-07 1.22e-06 5.77e-07 1.78e-07 1.97e-06 2.34e-07 6.91e-07 6.46e-07 7.07e-07 1.08e-06 7.8e-07 4.06e-08 4.49e-08 2.19e-07 3.22e-07 3.38e-07 1.86e-07 1.14e-07 1.48e-07 2.31e-07 4.45e-08 2.14e-06 5e-08 2.06e-07 1.82e-07 1.38e-07 9.95e-08 1.11e-08 5.15e-08
ENSG00000198711 \N -16259 4.04e-05 3.58e-05 6.95e-06 1.67e-05 6.77e-06 1.67e-05 5.04e-05 6.17e-06 3.81e-05 1.92e-05 4.69e-05 2.12e-05 5.54e-05 1.65e-05 8.15e-06 2.45e-05 2.1e-05 3.03e-05 8.82e-06 7.7e-06 1.94e-05 4.07e-05 3.58e-05 1.04e-05 5.3e-05 9.82e-06 1.75e-05 1.58e-05 3.65e-05 2.85e-05 2.51e-05 1.8e-06 3.37e-06 7.93e-06 1.33e-05 6.64e-06 3.69e-06 3.52e-06 5.44e-06 3.85e-06 1.78e-06 4.38e-05 4.42e-06 4.39e-07 2.87e-06 4.96e-06 4.68e-06 2.07e-06 1.53e-06
ENSG00000215883 \N 20145 3.81e-05 3.51e-05 6.64e-06 1.62e-05 6.62e-06 1.6e-05 4.92e-05 5.78e-06 3.72e-05 1.83e-05 4.6e-05 2.1e-05 5.42e-05 1.61e-05 7.94e-06 2.37e-05 2.01e-05 2.95e-05 8.46e-06 7.53e-06 1.84e-05 3.96e-05 3.5e-05 9.9e-06 5.19e-05 9.01e-06 1.69e-05 1.53e-05 3.57e-05 2.71e-05 2.46e-05 1.65e-06 3.07e-06 7.83e-06 1.3e-05 6.29e-06 3.52e-06 3.42e-06 5.3e-06 3.69e-06 1.78e-06 4.38e-05 4.28e-06 4.38e-07 2.73e-06 4.81e-06 4.58e-06 1.8e-06 1.47e-06