Genes within 1Mb (chr1:53957228:C:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000006555 TTC22 -844095 sc-eQTL 1.01e-01 0.334 0.203 0.05 CD8_TEM L2
ENSG00000058799 YIPF1 67430 sc-eQTL 2.50e-01 0.252 0.218 0.05 CD8_TEM L2
ENSG00000058804 NDC1 118765 sc-eQTL 2.10e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000081870 HSPB11 11299 sc-eQTL 6.36e-01 0.0935 0.197 0.05 CD8_TEM L2
ENSG00000116205 TCEANC2 -96356 sc-eQTL 3.65e-01 0.193 0.213 0.05 CD8_TEM L2
ENSG00000116209 TMEM59 -96276 sc-eQTL 5.06e-01 0.137 0.206 0.05 CD8_TEM L2
ENSG00000116212 LRRC42 11143 sc-eQTL 5.12e-01 0.146 0.222 0.05 CD8_TEM L2
ENSG00000116221 MRPL37 -226813 sc-eQTL 3.71e-02 0.433 0.206 0.05 CD8_TEM L2
ENSG00000157184 CPT2 760436 sc-eQTL 3.21e-01 0.215 0.216 0.05 CD8_TEM L2
ENSG00000157193 LRP8 628759 sc-eQTL 2.08e-01 0.261 0.207 0.05 CD8_TEM L2
ENSG00000157216 SSBP3 -456251 sc-eQTL 8.56e-01 0.0359 0.197 0.05 CD8_TEM L2
ENSG00000162383 SLC1A7 814596 sc-eQTL 3.16e-01 0.135 0.134 0.05 CD8_TEM L2
ENSG00000162384 CZIB 736594 sc-eQTL 5.23e-01 -0.142 0.222 0.05 CD8_TEM L2
ENSG00000162385 MAGOH 718710 sc-eQTL 7.09e-01 0.0701 0.188 0.05 CD8_TEM L2
ENSG00000243725 TTC4 -758633 sc-eQTL 5.87e-01 -0.115 0.211 0.05 CD8_TEM L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116209 TMEM59 -96276 eQTL 0.0356 0.0401 0.019 0.0 0.0 0.0491
ENSG00000116212 LRRC42 11143 eQTL 0.000359 0.158 0.0442 0.00478 0.00481 0.0491
ENSG00000157216 SSBP3 -456251 eQTL 0.0395 0.0613 0.0297 0.0 0.0 0.0491
ENSG00000162396 PARS2 -807295 eQTL 0.00593 0.164 0.0596 0.00237 0.0 0.0491
ENSG00000280378 AL353898.3 -77652 eQTL 0.017 -0.144 0.0603 0.0 0.0 0.0491


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162396 PARS2 -807295 2.67e-07 1.25e-07 5.82e-08 2.07e-07 8.92e-08 9.65e-08 1.49e-07 5.49e-08 1.44e-07 4.57e-08 1.6e-07 8.36e-08 1.47e-07 6.76e-08 5.91e-08 7.5e-08 3.94e-08 1.26e-07 5.39e-08 4.03e-08 1.08e-07 1.23e-07 1.39e-07 3.79e-08 1.37e-07 1.19e-07 1.11e-07 9.15e-08 1.05e-07 1.05e-07 9.7e-08 3.89e-08 3.09e-08 8e-08 7.36e-08 3.07e-08 5.04e-08 9.23e-08 7.47e-08 4.19e-08 4.51e-08 1.33e-07 4.7e-08 7.43e-09 3.84e-08 1.89e-08 1.25e-07 3.8e-09 4.85e-08
ENSG00000226754 \N 718618 2.67e-07 1.34e-07 7e-08 2.28e-07 9.01e-08 9.91e-08 1.73e-07 5.33e-08 1.45e-07 4.94e-08 1.52e-07 9.19e-08 1.87e-07 7.64e-08 5.94e-08 7.37e-08 4.09e-08 1.4e-07 6.07e-08 4.45e-08 1.22e-07 1.24e-07 1.5e-07 3.03e-08 1.55e-07 1.16e-07 1.07e-07 9.36e-08 1.16e-07 1.05e-07 1.08e-07 3.08e-08 3.35e-08 9.3e-08 3.81e-08 3.43e-08 5.74e-08 8.61e-08 6.54e-08 4.24e-08 4.36e-08 1.48e-07 5.2e-08 1.08e-08 2.64e-08 1.19e-08 1.24e-07 1.9e-09 4.88e-08