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Genes within 1Mb (chr1:50472176:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -488569 sc-eQTL 8.13e-01 0.0194 0.0817 0.842 B L1
ENSG00000123091 RNF11 -764097 sc-eQTL 2.23e-02 -0.174 0.0758 0.842 B L1
ENSG00000185104 FAF1 -488091 sc-eQTL 8.77e-01 -0.0133 0.0863 0.842 B L1
ENSG00000123080 CDKN2C -488569 sc-eQTL 1.06e-01 0.159 0.098 0.842 CD4T L1
ENSG00000123091 RNF11 -764097 sc-eQTL 7.64e-02 0.133 0.0746 0.842 CD4T L1
ENSG00000185104 FAF1 -488091 sc-eQTL 6.28e-01 -0.0344 0.0708 0.842 CD4T L1
ENSG00000123080 CDKN2C -488569 sc-eQTL 1.49e-02 0.259 0.106 0.842 CD8T L1
ENSG00000123091 RNF11 -764097 sc-eQTL 5.05e-01 0.0551 0.0824 0.842 CD8T L1
ENSG00000185104 FAF1 -488091 sc-eQTL 8.53e-01 -0.0151 0.0814 0.842 CD8T L1
ENSG00000085831 TTC39A -872940 sc-eQTL 2.92e-01 0.0755 0.0715 0.845 DC L1
ENSG00000123080 CDKN2C -488569 sc-eQTL 6.75e-02 0.207 0.113 0.845 DC L1
ENSG00000123091 RNF11 -764097 sc-eQTL 1.23e-01 -0.13 0.084 0.845 DC L1
ENSG00000185104 FAF1 -488091 sc-eQTL 3.02e-01 0.108 0.104 0.845 DC L1
ENSG00000123080 CDKN2C -488569 sc-eQTL 6.59e-01 0.0447 0.101 0.842 Mono L1
ENSG00000123091 RNF11 -764097 sc-eQTL 9.60e-02 0.106 0.0631 0.842 Mono L1
ENSG00000185104 FAF1 -488091 sc-eQTL 2.20e-02 0.191 0.0829 0.842 Mono L1
ENSG00000123080 CDKN2C -488569 sc-eQTL 4.50e-01 -0.0685 0.0904 0.841 NK L1
ENSG00000123091 RNF11 -764097 sc-eQTL 8.26e-01 0.0182 0.0827 0.841 NK L1
ENSG00000185104 FAF1 -488091 sc-eQTL 4.04e-01 -0.0617 0.0738 0.841 NK L1
ENSG00000123080 CDKN2C -488569 sc-eQTL 1.76e-01 -0.112 0.0822 0.842 Other_T L1
ENSG00000123091 RNF11 -764097 sc-eQTL 2.66e-01 0.0975 0.0874 0.842 Other_T L1
ENSG00000185104 FAF1 -488091 sc-eQTL 9.82e-03 -0.211 0.0809 0.842 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -488569 sc-eQTL 5.95e-01 0.0522 0.0979 0.837 B_Activated L2
ENSG00000123091 RNF11 -764097 sc-eQTL 9.21e-01 0.012 0.121 0.837 B_Activated L2
ENSG00000185104 FAF1 -488091 sc-eQTL 1.42e-02 -0.297 0.12 0.837 B_Activated L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 3.86e-01 0.09 0.103 0.841 B_Intermediate L2
ENSG00000123091 RNF11 -764097 sc-eQTL 3.20e-01 -0.0925 0.0928 0.841 B_Intermediate L2
ENSG00000185104 FAF1 -488091 sc-eQTL 6.45e-01 0.0475 0.103 0.841 B_Intermediate L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 1.85e-01 -0.141 0.106 0.841 B_Memory L2
ENSG00000123091 RNF11 -764097 sc-eQTL 9.48e-01 0.00692 0.105 0.841 B_Memory L2
ENSG00000185104 FAF1 -488091 sc-eQTL 5.76e-01 -0.0598 0.107 0.841 B_Memory L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 2.83e-01 -0.123 0.114 0.842 B_Naive1 L2
ENSG00000123091 RNF11 -764097 sc-eQTL 3.93e-02 -0.197 0.0949 0.842 B_Naive1 L2
ENSG00000185104 FAF1 -488091 sc-eQTL 4.06e-02 0.19 0.0921 0.842 B_Naive1 L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 1.80e-01 0.124 0.0921 0.841 B_Naive2 L2
ENSG00000123091 RNF11 -764097 sc-eQTL 2.31e-02 -0.249 0.109 0.841 B_Naive2 L2
ENSG00000185104 FAF1 -488091 sc-eQTL 4.86e-01 -0.0706 0.101 0.841 B_Naive2 L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 8.75e-01 -0.0193 0.123 0.839 CD4_CTL L2
ENSG00000123091 RNF11 -764097 sc-eQTL 2.53e-01 0.132 0.115 0.839 CD4_CTL L2
ENSG00000185104 FAF1 -488091 sc-eQTL 3.71e-01 -0.0925 0.103 0.839 CD4_CTL L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 3.57e-03 0.299 0.102 0.842 CD4_Naive L2
ENSG00000123091 RNF11 -764097 sc-eQTL 1.43e-01 0.108 0.0731 0.842 CD4_Naive L2
ENSG00000185104 FAF1 -488091 sc-eQTL 5.56e-01 -0.0439 0.0745 0.842 CD4_Naive L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 6.79e-01 -0.0466 0.112 0.842 CD4_TCM L2
ENSG00000123091 RNF11 -764097 sc-eQTL 1.31e-01 0.137 0.0906 0.842 CD4_TCM L2
ENSG00000185104 FAF1 -488091 sc-eQTL 6.70e-01 0.0398 0.0933 0.842 CD4_TCM L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 6.00e-01 -0.0627 0.119 0.842 CD4_TEM L2
ENSG00000123091 RNF11 -764097 sc-eQTL 3.07e-01 0.0978 0.0954 0.842 CD4_TEM L2
ENSG00000185104 FAF1 -488091 sc-eQTL 2.66e-02 -0.207 0.0928 0.842 CD4_TEM L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 4.35e-01 0.0879 0.112 0.842 CD8_CTL L2
ENSG00000123091 RNF11 -764097 sc-eQTL 6.77e-01 0.042 0.101 0.842 CD8_CTL L2
ENSG00000185104 FAF1 -488091 sc-eQTL 2.86e-01 -0.0984 0.0921 0.842 CD8_CTL L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 2.30e-02 0.274 0.12 0.842 CD8_Naive L2
ENSG00000123091 RNF11 -764097 sc-eQTL 8.66e-01 0.0155 0.0917 0.842 CD8_Naive L2
ENSG00000185104 FAF1 -488091 sc-eQTL 1.98e-01 0.121 0.0937 0.842 CD8_Naive L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 6.31e-01 -0.053 0.11 0.845 CD8_TCM L2
ENSG00000123091 RNF11 -764097 sc-eQTL 1.42e-01 0.169 0.115 0.845 CD8_TCM L2
ENSG00000185104 FAF1 -488091 sc-eQTL 4.49e-02 0.207 0.102 0.845 CD8_TCM L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 9.88e-01 -0.00178 0.122 0.842 CD8_TEM L2
ENSG00000123091 RNF11 -764097 sc-eQTL 8.58e-02 0.213 0.123 0.842 CD8_TEM L2
ENSG00000185104 FAF1 -488091 sc-eQTL 3.02e-01 -0.126 0.122 0.842 CD8_TEM L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 3.90e-01 -0.103 0.119 0.84 MAIT L2
ENSG00000123091 RNF11 -764097 sc-eQTL 1.98e-01 0.135 0.105 0.84 MAIT L2
ENSG00000185104 FAF1 -488091 sc-eQTL 3.45e-01 -0.0967 0.102 0.84 MAIT L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 3.29e-01 -0.108 0.11 0.838 NK_CD56bright L2
ENSG00000123091 RNF11 -764097 sc-eQTL 4.97e-01 0.0752 0.11 0.838 NK_CD56bright L2
ENSG00000185104 FAF1 -488091 sc-eQTL 9.95e-01 -0.000692 0.103 0.838 NK_CD56bright L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 5.19e-01 0.0642 0.0993 0.841 NK_CD56dim L2
ENSG00000123091 RNF11 -764097 sc-eQTL 8.88e-01 -0.0143 0.101 0.841 NK_CD56dim L2
ENSG00000185104 FAF1 -488091 sc-eQTL 1.65e-01 -0.122 0.0875 0.841 NK_CD56dim L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 3.20e-01 -0.115 0.116 0.836 NK_HLA L2
ENSG00000123091 RNF11 -764097 sc-eQTL 1.25e-01 0.175 0.114 0.836 NK_HLA L2
ENSG00000185104 FAF1 -488091 sc-eQTL 8.49e-01 -0.0207 0.109 0.836 NK_HLA L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 5.05e-01 -0.0655 0.0979 0.841 NK_cytokine L2
ENSG00000123091 RNF11 -764097 sc-eQTL 1.22e-01 0.164 0.106 0.841 NK_cytokine L2
ENSG00000185104 FAF1 -488091 sc-eQTL 2.52e-01 0.0979 0.0852 0.841 NK_cytokine L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 4.35e-01 0.0896 0.115 0.844 PB L2
ENSG00000123091 RNF11 -764097 sc-eQTL 5.45e-01 0.0955 0.157 0.844 PB L2
ENSG00000185104 FAF1 -488091 sc-eQTL 4.50e-01 -0.116 0.153 0.844 PB L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 7.24e-01 -0.0322 0.0912 0.843 Pro_T L2
ENSG00000123091 RNF11 -764097 sc-eQTL 7.44e-01 0.0378 0.116 0.843 Pro_T L2
ENSG00000185104 FAF1 -488091 sc-eQTL 3.39e-01 0.0906 0.0947 0.843 Pro_T L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 8.51e-01 0.0199 0.106 0.842 Treg L2
ENSG00000123091 RNF11 -764097 sc-eQTL 4.40e-01 0.0867 0.112 0.842 Treg L2
ENSG00000185104 FAF1 -488091 sc-eQTL 6.63e-01 -0.044 0.101 0.842 Treg L2
ENSG00000085831 TTC39A -872940 sc-eQTL 3.14e-01 0.0368 0.0364 0.834 cDC L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 1.92e-01 0.154 0.118 0.834 cDC L2
ENSG00000123091 RNF11 -764097 sc-eQTL 7.28e-01 -0.0425 0.122 0.834 cDC L2
ENSG00000185104 FAF1 -488091 sc-eQTL 1.82e-01 0.147 0.109 0.834 cDC L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 8.87e-01 0.0153 0.107 0.842 cMono_IL1B L2
ENSG00000123091 RNF11 -764097 sc-eQTL 8.83e-03 0.183 0.0691 0.842 cMono_IL1B L2
ENSG00000185104 FAF1 -488091 sc-eQTL 1.66e-01 0.135 0.0974 0.842 cMono_IL1B L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 5.76e-01 0.0661 0.118 0.842 cMono_S100A L2
ENSG00000123091 RNF11 -764097 sc-eQTL 4.10e-01 -0.0767 0.0929 0.842 cMono_S100A L2
ENSG00000185104 FAF1 -488091 sc-eQTL 1.85e-02 0.262 0.111 0.842 cMono_S100A L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 5.68e-01 -0.0803 0.14 0.839 gdT L2
ENSG00000123091 RNF11 -764097 sc-eQTL 7.12e-01 0.0515 0.139 0.839 gdT L2
ENSG00000185104 FAF1 -488091 sc-eQTL 1.29e-01 -0.206 0.134 0.839 gdT L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 1.34e-01 0.165 0.11 0.844 intMono L2
ENSG00000123091 RNF11 -764097 sc-eQTL 6.88e-01 0.0437 0.109 0.844 intMono L2
ENSG00000185104 FAF1 -488091 sc-eQTL 7.86e-01 0.0314 0.115 0.844 intMono L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 9.07e-01 -0.0131 0.112 0.844 ncMono L2
ENSG00000123091 RNF11 -764097 sc-eQTL 3.21e-02 0.228 0.105 0.844 ncMono L2
ENSG00000185104 FAF1 -488091 sc-eQTL 5.24e-01 0.0606 0.0951 0.844 ncMono L2
ENSG00000085831 TTC39A -872940 sc-eQTL 2.41e-01 0.117 0.0992 0.836 pDC L2
ENSG00000123080 CDKN2C -488569 sc-eQTL 7.59e-01 0.0326 0.106 0.836 pDC L2
ENSG00000123091 RNF11 -764097 sc-eQTL 7.67e-02 -0.163 0.0914 0.836 pDC L2
ENSG00000185104 FAF1 -488091 sc-eQTL 6.83e-01 -0.0519 0.127 0.836 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000123080 CDKN2C -488569 sc-eQTL 4.64e-01 -0.0818 0.112 0.842 B_Memory LOneK1K
ENSG00000123091 RNF11 -764097 sc-eQTL 6.12e-01 -0.0403 0.0794 0.842 B_Memory LOneK1K
ENSG00000185104 FAF1 -488091 sc-eQTL 5.85e-01 -0.0543 0.0995 0.842 B_Memory LOneK1K
ENSG00000123080 CDKN2C -488569 sc-eQTL 8.72e-01 -0.018 0.111 0.842 B_Naive LOneK1K
ENSG00000123091 RNF11 -764097 sc-eQTL 1.09e-02 -0.236 0.0918 0.842 B_Naive LOneK1K
ENSG00000185104 FAF1 -488091 sc-eQTL 3.69e-01 0.0808 0.0897 0.842 B_Naive LOneK1K
ENSG00000123080 CDKN2C -488569 sc-eQTL 7.52e-01 0.0325 0.103 0.842 CD14_Mono LOneK1K
ENSG00000123091 RNF11 -764097 sc-eQTL 2.26e-01 0.0812 0.0669 0.842 CD14_Mono LOneK1K
ENSG00000185104 FAF1 -488091 sc-eQTL 8.08e-03 0.247 0.0926 0.842 CD14_Mono LOneK1K
ENSG00000123080 CDKN2C -488569 sc-eQTL 5.36e-01 0.0687 0.111 0.843 CD16_Mono LOneK1K
ENSG00000123091 RNF11 -764097 sc-eQTL 2.73e-01 0.106 0.096 0.843 CD16_Mono LOneK1K
ENSG00000185104 FAF1 -488091 sc-eQTL 3.59e-01 0.0805 0.0876 0.843 CD16_Mono LOneK1K
ENSG00000123080 CDKN2C -488569 sc-eQTL 5.81e-01 -0.0514 0.0929 0.841 NK_CD56dim LOneK1K
ENSG00000123091 RNF11 -764097 sc-eQTL 6.64e-01 0.0372 0.0854 0.841 NK_CD56dim LOneK1K
ENSG00000185104 FAF1 -488091 sc-eQTL 2.40e-01 -0.0886 0.0752 0.841 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000123080 CDKN2C -488569 eQTL 3.39e-35 -0.43 0.0333 0.0 0.0 0.153
ENSG00000123091 RNF11 -764097 eQTL 0.0122 0.0446 0.0178 0.0 0.0 0.153
ENSG00000185104 FAF1 -488091 eQTL 0.00322 0.0556 0.0188 0.0 0.0 0.153
ENSG00000232027 AL671986.1 -900094 eQTL 0.095 -0.081 0.0485 0.00114 0.0 0.153

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123080 CDKN2C -488569 1.3e-06 1.33e-06 2.32e-07 1.93e-06 4.22e-07 7.48e-07 1.8e-06 4.17e-07 1.77e-06 6.07e-07 2.48e-06 9.21e-07 2.63e-06 5.06e-07 4.89e-07 9.92e-07 9.57e-07 1.27e-06 7.66e-07 5.52e-07 7.19e-07 1.93e-06 1.63e-06 9.82e-07 2.43e-06 8.03e-07 1.03e-06 1.38e-06 1.68e-06 2.37e-06 8.65e-07 4.99e-08 4.8e-07 6.24e-07 6.11e-07 1.01e-06 7.24e-07 2.24e-07 4.26e-07 8.8e-09 1.85e-07 2.43e-06 4.86e-07 1.95e-07 1.84e-07 3.08e-07 2.33e-07 7.74e-08 8.21e-08
ENSG00000123091 RNF11 -764097 1.05e-06 8.23e-07 2.15e-07 1.17e-06 9.9e-08 4.51e-07 1.58e-06 2.74e-07 1.09e-06 2.98e-07 1.79e-06 5.28e-07 1.49e-06 2.29e-07 3.27e-07 3.36e-07 6.07e-07 5.67e-07 5.88e-07 2.78e-07 3.87e-07 8.66e-07 6.93e-07 4.61e-07 1.72e-06 2.34e-07 4.7e-07 5.44e-07 8.16e-07 1.19e-06 4.55e-07 5.3e-08 2.31e-07 2.06e-07 3.26e-07 4.44e-07 1.1e-07 9.33e-08 6.66e-08 7.78e-08 4.68e-08 1.26e-06 5.41e-08 5.72e-08 8.43e-08 6.87e-08 8.13e-08 7.25e-09 5.52e-08
ENSG00000185104 FAF1 -488091 1.3e-06 1.33e-06 2.32e-07 1.95e-06 4.22e-07 7.23e-07 1.78e-06 4.32e-07 1.77e-06 6.07e-07 2.48e-06 9.21e-07 2.68e-06 5.06e-07 4.89e-07 9.36e-07 9.57e-07 1.27e-06 7.66e-07 5.52e-07 7.37e-07 1.97e-06 1.56e-06 1e-06 2.42e-06 8.08e-07 1.03e-06 1.4e-06 1.68e-06 2.37e-06 8.65e-07 4.99e-08 4.8e-07 6.24e-07 6.11e-07 1.01e-06 7.4e-07 2.24e-07 4.26e-07 8.8e-09 1.97e-07 2.46e-06 4.86e-07 1.95e-07 1.84e-07 3.08e-07 2.35e-07 6.95e-08 8.28e-08