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Genes within 1Mb (chr1:48329698:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -142510 sc-eQTL 6.93e-01 0.0457 0.116 0.179 B L1
ENSG00000162368 CMPK1 995901 sc-eQTL 6.16e-01 0.0403 0.0802 0.179 B L1
ENSG00000162373 BEND5 -447271 sc-eQTL 7.53e-01 -0.0211 0.0668 0.179 B L1
ENSG00000132122 SPATA6 -142510 sc-eQTL 5.68e-01 -0.0653 0.114 0.179 CD4T L1
ENSG00000162368 CMPK1 995901 sc-eQTL 8.94e-01 0.0102 0.0764 0.179 CD4T L1
ENSG00000162373 BEND5 -447271 sc-eQTL 3.71e-01 0.0909 0.101 0.179 CD4T L1
ENSG00000162368 CMPK1 995901 sc-eQTL 5.92e-01 0.038 0.0708 0.179 CD8T L1
ENSG00000162373 BEND5 -447271 sc-eQTL 8.30e-01 0.0143 0.0662 0.179 CD8T L1
ENSG00000132122 SPATA6 -142510 sc-eQTL 2.77e-01 0.13 0.119 0.185 DC L1
ENSG00000162368 CMPK1 995901 sc-eQTL 5.80e-01 0.0551 0.0995 0.185 DC L1
ENSG00000162373 BEND5 -447271 sc-eQTL 3.66e-01 -0.0914 0.101 0.185 DC L1
ENSG00000132122 SPATA6 -142510 sc-eQTL 4.60e-01 0.0633 0.0855 0.179 Mono L1
ENSG00000162368 CMPK1 995901 sc-eQTL 1.43e-03 0.268 0.0829 0.179 Mono L1
ENSG00000162368 CMPK1 995901 sc-eQTL 4.37e-01 0.0551 0.0707 0.178 NK L1
ENSG00000162368 CMPK1 995901 sc-eQTL 6.14e-01 -0.0491 0.0973 0.179 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -142510 sc-eQTL 8.42e-01 0.0222 0.111 0.168 B_Activated L2
ENSG00000162368 CMPK1 995901 sc-eQTL 9.60e-01 -0.00661 0.133 0.168 B_Activated L2
ENSG00000162373 BEND5 -447271 sc-eQTL 5.63e-01 -0.0773 0.133 0.168 B_Activated L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 9.02e-01 -0.0142 0.116 0.178 B_Intermediate L2
ENSG00000162368 CMPK1 995901 sc-eQTL 4.57e-01 0.0726 0.0974 0.178 B_Intermediate L2
ENSG00000162373 BEND5 -447271 sc-eQTL 3.35e-01 0.101 0.105 0.178 B_Intermediate L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 3.54e-01 -0.098 0.105 0.181 B_Memory L2
ENSG00000162368 CMPK1 995901 sc-eQTL 3.76e-01 0.0917 0.103 0.181 B_Memory L2
ENSG00000162373 BEND5 -447271 sc-eQTL 1.30e-01 0.185 0.122 0.181 B_Memory L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 1.62e-01 0.169 0.12 0.179 B_Naive1 L2
ENSG00000162368 CMPK1 995901 sc-eQTL 8.09e-01 0.0235 0.0973 0.179 B_Naive1 L2
ENSG00000162373 BEND5 -447271 sc-eQTL 7.99e-01 -0.0204 0.0803 0.179 B_Naive1 L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 7.91e-01 -0.033 0.124 0.18 B_Naive2 L2
ENSG00000162368 CMPK1 995901 sc-eQTL 8.18e-01 0.0237 0.103 0.18 B_Naive2 L2
ENSG00000162373 BEND5 -447271 sc-eQTL 5.05e-01 -0.0618 0.0925 0.18 B_Naive2 L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 7.25e-01 -0.0385 0.109 0.177 CD4_CTL L2
ENSG00000162368 CMPK1 995901 sc-eQTL 5.19e-01 -0.0796 0.123 0.177 CD4_CTL L2
ENSG00000162373 BEND5 -447271 sc-eQTL 8.47e-01 -0.0163 0.084 0.177 CD4_CTL L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 9.92e-01 0.00124 0.118 0.179 CD4_Naive L2
ENSG00000162368 CMPK1 995901 sc-eQTL 7.77e-01 0.0206 0.0726 0.179 CD4_Naive L2
ENSG00000162373 BEND5 -447271 sc-eQTL 4.08e-01 0.094 0.113 0.179 CD4_Naive L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 3.47e-01 -0.108 0.115 0.179 CD4_TCM L2
ENSG00000162368 CMPK1 995901 sc-eQTL 5.30e-01 0.05 0.0795 0.179 CD4_TCM L2
ENSG00000162373 BEND5 -447271 sc-eQTL 4.98e-02 0.23 0.117 0.179 CD4_TCM L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 2.97e-01 -0.129 0.123 0.179 CD4_TEM L2
ENSG00000162368 CMPK1 995901 sc-eQTL 2.11e-01 0.128 0.102 0.179 CD4_TEM L2
ENSG00000162373 BEND5 -447271 sc-eQTL 8.09e-01 0.0248 0.102 0.179 CD4_TEM L2
ENSG00000162368 CMPK1 995901 sc-eQTL 6.43e-01 0.0429 0.0925 0.179 CD8_CTL L2
ENSG00000162373 BEND5 -447271 sc-eQTL 9.79e-01 -0.00241 0.0918 0.179 CD8_CTL L2
ENSG00000162368 CMPK1 995901 sc-eQTL 4.03e-01 0.0742 0.0885 0.179 CD8_Naive L2
ENSG00000162373 BEND5 -447271 sc-eQTL 7.31e-01 0.0377 0.109 0.179 CD8_Naive L2
ENSG00000162368 CMPK1 995901 sc-eQTL 9.62e-01 -0.00485 0.1 0.188 CD8_TCM L2
ENSG00000162373 BEND5 -447271 sc-eQTL 6.58e-01 -0.0513 0.116 0.188 CD8_TCM L2
ENSG00000162368 CMPK1 995901 sc-eQTL 4.36e-02 -0.244 0.12 0.167 CD8_TEM L2
ENSG00000162373 BEND5 -447271 sc-eQTL 4.28e-01 -0.0807 0.102 0.167 CD8_TEM L2
ENSG00000162368 CMPK1 995901 sc-eQTL 4.54e-01 0.0746 0.0994 0.182 MAIT L2
ENSG00000162368 CMPK1 995901 sc-eQTL 2.33e-01 0.135 0.113 0.178 NK_CD56bright L2
ENSG00000162368 CMPK1 995901 sc-eQTL 6.70e-01 0.0369 0.0863 0.175 NK_CD56dim L2
ENSG00000162368 CMPK1 995901 sc-eQTL 3.50e-01 -0.109 0.116 0.183 NK_HLA L2
ENSG00000162368 CMPK1 995901 sc-eQTL 9.28e-01 0.00956 0.105 0.175 NK_cytokine L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 6.71e-01 0.0466 0.109 0.167 PB L2
ENSG00000162368 CMPK1 995901 sc-eQTL 3.86e-01 -0.126 0.145 0.167 PB L2
ENSG00000162373 BEND5 -447271 sc-eQTL 1.16e-01 0.244 0.154 0.167 PB L2
ENSG00000162368 CMPK1 995901 sc-eQTL 3.30e-01 0.107 0.109 0.183 Pro_T L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 7.75e-01 -0.0289 0.101 0.179 Treg L2
ENSG00000162368 CMPK1 995901 sc-eQTL 6.41e-01 0.043 0.0921 0.179 Treg L2
ENSG00000162373 BEND5 -447271 sc-eQTL 8.75e-02 0.17 0.0992 0.179 Treg L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 2.23e-01 0.149 0.122 0.188 cDC L2
ENSG00000162368 CMPK1 995901 sc-eQTL 3.67e-01 0.102 0.113 0.188 cDC L2
ENSG00000162373 BEND5 -447271 sc-eQTL 2.43e-01 -0.116 0.0992 0.188 cDC L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 5.70e-01 -0.0585 0.103 0.179 cMono_IL1B L2
ENSG00000162368 CMPK1 995901 sc-eQTL 2.14e-02 0.214 0.0922 0.179 cMono_IL1B L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 1.95e-01 0.144 0.111 0.179 cMono_S100A L2
ENSG00000162368 CMPK1 995901 sc-eQTL 8.15e-03 0.281 0.105 0.179 cMono_S100A L2
ENSG00000162368 CMPK1 995901 sc-eQTL 4.75e-01 -0.0959 0.134 0.182 gdT L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 5.80e-02 0.223 0.117 0.178 intMono L2
ENSG00000162368 CMPK1 995901 sc-eQTL 5.70e-01 0.0663 0.116 0.178 intMono L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 2.36e-01 0.116 0.0972 0.176 ncMono L2
ENSG00000162368 CMPK1 995901 sc-eQTL 6.03e-02 0.213 0.113 0.176 ncMono L2
ENSG00000132122 SPATA6 -142510 sc-eQTL 3.85e-01 0.11 0.126 0.184 pDC L2
ENSG00000162368 CMPK1 995901 sc-eQTL 6.97e-01 -0.0476 0.122 0.184 pDC L2
ENSG00000162373 BEND5 -447271 sc-eQTL 3.74e-01 -0.107 0.12 0.184 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -142510 sc-eQTL 9.72e-01 -0.00408 0.118 0.179 B_Memory LOneK1K
ENSG00000162368 CMPK1 995901 sc-eQTL 4.70e-01 0.0683 0.0944 0.179 B_Memory LOneK1K
ENSG00000162373 BEND5 -447271 sc-eQTL 2.32e-01 0.118 0.0988 0.179 B_Memory LOneK1K
ENSG00000132122 SPATA6 -142510 sc-eQTL 3.41e-01 0.117 0.123 0.179 B_Naive LOneK1K
ENSG00000162368 CMPK1 995901 sc-eQTL 8.98e-01 -0.0123 0.0962 0.179 B_Naive LOneK1K
ENSG00000162373 BEND5 -447271 sc-eQTL 3.76e-01 -0.0628 0.0709 0.179 B_Naive LOneK1K
ENSG00000132122 SPATA6 -142510 sc-eQTL 9.50e-01 0.00614 0.0986 0.179 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 995901 sc-eQTL 2.18e-03 0.259 0.0835 0.179 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -142510 sc-eQTL 1.71e-02 0.21 0.0871 0.177 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 995901 sc-eQTL 1.35e-01 0.154 0.103 0.177 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 995901 sc-eQTL 8.31e-01 0.0156 0.0728 0.175 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 107013 eQTL 0.00386 -0.06 0.0207 0.0 0.00227 0.171
ENSG00000162368 CMPK1 995901 eQTL 0.0452 0.0274 0.0137 0.0 0.0 0.171
ENSG00000186564 FOXD2 893681 eQTL 1.13e-02 0.0827 0.0326 0.00157 0.0 0.171
ENSG00000237424 FOXD2-AS1 895057 eQTL 0.0219 0.075 0.0327 0.00102 0.0 0.171

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000162368 CMPK1 995901 3.02e-07 1.34e-07 7.97e-08 2.27e-07 8.83e-08 8.21e-08 1.6e-07 5.35e-08 1.45e-07 4.4e-08 1.6e-07 1.05e-07 1.45e-07 6.76e-08 6.18e-08 7.36e-08 3.88e-08 1.4e-07 6.07e-08 4.21e-08 1.13e-07 1.24e-07 1.39e-07 3.03e-08 1.46e-07 1.21e-07 1.07e-07 9.65e-08 1.09e-07 1.07e-07 9.91e-08 3.64e-08 3.35e-08 8.89e-08 2.97e-08 3.62e-08 5.37e-08 8.51e-08 6.63e-08 3.6e-08 5.44e-08 1.35e-07 3.19e-08 7.37e-09 4.92e-08 9.65e-09 1.19e-07 1.89e-09 4.81e-08
ENSG00000235105 \N -106269 2.22e-05 1.43e-05 3.38e-06 8.87e-06 2.4e-06 7.28e-06 2.09e-05 2.15e-06 1.09e-05 6.37e-06 1.64e-05 6.86e-06 1.85e-05 5.67e-06 5.07e-06 8.21e-06 8.19e-06 1.23e-05 3.54e-06 4.08e-06 6.93e-06 1.26e-05 1.33e-05 4.52e-06 2.11e-05 5.12e-06 7.48e-06 5.26e-06 1.5e-05 1.03e-05 7.54e-06 1.33e-06 1.46e-06 4.07e-06 6.02e-06 2.81e-06 1.89e-06 2.61e-06 2.81e-06 1.96e-06 1.05e-06 1.7e-05 2.63e-06 1.35e-07 1.05e-06 2.52e-06 2.57e-06 6.55e-07 4.49e-07