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Genes within 1Mb (chr1:48254547:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -217661 sc-eQTL 7.58e-01 0.0303 0.0982 0.782 B L1
ENSG00000162368 CMPK1 920750 sc-eQTL 2.09e-01 0.0856 0.0678 0.782 B L1
ENSG00000162373 BEND5 -522422 sc-eQTL 6.13e-01 -0.0287 0.0567 0.782 B L1
ENSG00000132122 SPATA6 -217661 sc-eQTL 3.62e-01 -0.089 0.0975 0.782 CD4T L1
ENSG00000162368 CMPK1 920750 sc-eQTL 9.32e-01 0.0056 0.0652 0.782 CD4T L1
ENSG00000162373 BEND5 -522422 sc-eQTL 3.74e-01 0.0771 0.0866 0.782 CD4T L1
ENSG00000162368 CMPK1 920750 sc-eQTL 4.58e-01 0.0447 0.06 0.782 CD8T L1
ENSG00000162373 BEND5 -522422 sc-eQTL 8.38e-01 -0.0115 0.0562 0.782 CD8T L1
ENSG00000123473 STIL 940400 sc-eQTL 8.74e-01 -0.0149 0.0933 0.784 DC L1
ENSG00000132122 SPATA6 -217661 sc-eQTL 3.31e-01 0.102 0.104 0.784 DC L1
ENSG00000162368 CMPK1 920750 sc-eQTL 9.20e-01 0.00874 0.0873 0.784 DC L1
ENSG00000162373 BEND5 -522422 sc-eQTL 4.88e-01 -0.0615 0.0885 0.784 DC L1
ENSG00000132122 SPATA6 -217661 sc-eQTL 1.47e-01 0.105 0.0723 0.782 Mono L1
ENSG00000162368 CMPK1 920750 sc-eQTL 5.84e-01 0.0395 0.072 0.782 Mono L1
ENSG00000162368 CMPK1 920750 sc-eQTL 4.72e-01 -0.044 0.0611 0.781 NK L1
ENSG00000123473 STIL 940400 sc-eQTL 7.86e-01 0.0144 0.0531 0.782 Other_T L1
ENSG00000162368 CMPK1 920750 sc-eQTL 6.98e-01 -0.0326 0.084 0.782 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -217661 sc-eQTL 8.51e-01 0.0176 0.0938 0.778 B_Activated L2
ENSG00000162368 CMPK1 920750 sc-eQTL 8.20e-01 -0.0256 0.112 0.778 B_Activated L2
ENSG00000162373 BEND5 -522422 sc-eQTL 9.22e-01 0.011 0.113 0.778 B_Activated L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 4.37e-01 0.0768 0.0986 0.781 B_Intermediate L2
ENSG00000162368 CMPK1 920750 sc-eQTL 1.67e-01 0.115 0.0827 0.781 B_Intermediate L2
ENSG00000162373 BEND5 -522422 sc-eQTL 5.24e-01 -0.0572 0.0897 0.781 B_Intermediate L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 5.14e-01 -0.0595 0.091 0.78 B_Memory L2
ENSG00000162368 CMPK1 920750 sc-eQTL 2.59e-01 0.101 0.089 0.78 B_Memory L2
ENSG00000162373 BEND5 -522422 sc-eQTL 4.03e-01 -0.0882 0.105 0.78 B_Memory L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 7.50e-01 -0.0322 0.101 0.782 B_Naive1 L2
ENSG00000162368 CMPK1 920750 sc-eQTL 1.68e-01 0.112 0.0808 0.782 B_Naive1 L2
ENSG00000162373 BEND5 -522422 sc-eQTL 2.54e-01 -0.0765 0.0668 0.782 B_Naive1 L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 8.64e-01 0.0183 0.106 0.781 B_Naive2 L2
ENSG00000162368 CMPK1 920750 sc-eQTL 8.59e-01 0.0156 0.0879 0.781 B_Naive2 L2
ENSG00000162373 BEND5 -522422 sc-eQTL 7.17e-01 0.0286 0.0789 0.781 B_Naive2 L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 7.38e-01 0.0296 0.0882 0.777 CD4_CTL L2
ENSG00000162368 CMPK1 920750 sc-eQTL 9.58e-01 -0.00528 0.0998 0.777 CD4_CTL L2
ENSG00000162373 BEND5 -522422 sc-eQTL 4.76e-01 -0.0484 0.0679 0.777 CD4_CTL L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 5.51e-01 -0.0603 0.101 0.782 CD4_Naive L2
ENSG00000162368 CMPK1 920750 sc-eQTL 9.72e-01 0.00222 0.0621 0.782 CD4_Naive L2
ENSG00000162373 BEND5 -522422 sc-eQTL 7.71e-01 0.0283 0.0971 0.782 CD4_Naive L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 2.32e-01 -0.118 0.0985 0.782 CD4_TCM L2
ENSG00000162368 CMPK1 920750 sc-eQTL 8.12e-01 -0.0163 0.0684 0.782 CD4_TCM L2
ENSG00000162373 BEND5 -522422 sc-eQTL 4.64e-01 0.0743 0.101 0.782 CD4_TCM L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 4.76e-01 -0.0748 0.105 0.782 CD4_TEM L2
ENSG00000162368 CMPK1 920750 sc-eQTL 5.25e-01 0.0551 0.0866 0.782 CD4_TEM L2
ENSG00000162373 BEND5 -522422 sc-eQTL 3.06e-01 0.089 0.0868 0.782 CD4_TEM L2
ENSG00000162368 CMPK1 920750 sc-eQTL 6.52e-01 0.036 0.0797 0.782 CD8_CTL L2
ENSG00000162373 BEND5 -522422 sc-eQTL 7.75e-01 -0.0227 0.0791 0.782 CD8_CTL L2
ENSG00000162368 CMPK1 920750 sc-eQTL 3.36e-01 0.074 0.0767 0.782 CD8_Naive L2
ENSG00000162373 BEND5 -522422 sc-eQTL 6.96e-01 0.0371 0.0947 0.782 CD8_Naive L2
ENSG00000162368 CMPK1 920750 sc-eQTL 8.28e-01 0.0192 0.0883 0.775 CD8_TCM L2
ENSG00000162373 BEND5 -522422 sc-eQTL 6.31e-01 -0.049 0.102 0.775 CD8_TCM L2
ENSG00000162368 CMPK1 920750 sc-eQTL 3.02e-01 -0.102 0.0987 0.776 CD8_TEM L2
ENSG00000162373 BEND5 -522422 sc-eQTL 6.15e-01 0.0418 0.0831 0.776 CD8_TEM L2
ENSG00000123473 STIL 940400 sc-eQTL 4.72e-01 -0.0612 0.0849 0.781 MAIT L2
ENSG00000162368 CMPK1 920750 sc-eQTL 3.53e-01 0.079 0.0848 0.781 MAIT L2
ENSG00000162368 CMPK1 920750 sc-eQTL 9.40e-01 0.00754 0.0997 0.787 NK_CD56bright L2
ENSG00000162368 CMPK1 920750 sc-eQTL 8.71e-01 0.0123 0.0756 0.78 NK_CD56dim L2
ENSG00000162368 CMPK1 920750 sc-eQTL 2.99e-01 -0.103 0.0987 0.79 NK_HLA L2
ENSG00000162368 CMPK1 920750 sc-eQTL 2.23e-01 -0.113 0.092 0.78 NK_cytokine L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 5.44e-02 -0.167 0.0859 0.77 PB L2
ENSG00000162368 CMPK1 920750 sc-eQTL 9.97e-01 -0.000429 0.116 0.77 PB L2
ENSG00000162373 BEND5 -522422 sc-eQTL 4.52e-01 0.0934 0.124 0.77 PB L2
ENSG00000123473 STIL 940400 sc-eQTL 3.70e-01 0.0596 0.0664 0.785 Pro_T L2
ENSG00000162368 CMPK1 920750 sc-eQTL 7.33e-01 0.0333 0.0975 0.785 Pro_T L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 1.73e-01 -0.116 0.0851 0.782 Treg L2
ENSG00000162368 CMPK1 920750 sc-eQTL 6.00e-01 -0.0408 0.0777 0.782 Treg L2
ENSG00000162373 BEND5 -522422 sc-eQTL 3.55e-01 0.078 0.0842 0.782 Treg L2
ENSG00000123473 STIL 940400 sc-eQTL 6.61e-01 -0.0414 0.0941 0.783 cDC L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 6.83e-02 0.202 0.11 0.783 cDC L2
ENSG00000162368 CMPK1 920750 sc-eQTL 5.52e-02 0.196 0.101 0.783 cDC L2
ENSG00000162373 BEND5 -522422 sc-eQTL 1.90e-01 0.118 0.0897 0.783 cDC L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 9.95e-02 0.145 0.0878 0.782 cMono_IL1B L2
ENSG00000162368 CMPK1 920750 sc-eQTL 3.39e-01 0.0767 0.08 0.782 cMono_IL1B L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 5.86e-01 0.052 0.0954 0.782 cMono_S100A L2
ENSG00000162368 CMPK1 920750 sc-eQTL 5.14e-01 0.0598 0.0916 0.782 cMono_S100A L2
ENSG00000123473 STIL 940400 sc-eQTL 3.97e-01 0.0857 0.101 0.785 gdT L2
ENSG00000162368 CMPK1 920750 sc-eQTL 7.76e-01 -0.0335 0.118 0.785 gdT L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 9.04e-01 0.0123 0.102 0.778 intMono L2
ENSG00000162368 CMPK1 920750 sc-eQTL 3.71e-01 -0.09 0.1 0.778 intMono L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 7.77e-01 0.0236 0.0833 0.783 ncMono L2
ENSG00000162368 CMPK1 920750 sc-eQTL 7.53e-01 -0.0306 0.0971 0.783 ncMono L2
ENSG00000123473 STIL 940400 sc-eQTL 3.47e-01 0.0974 0.103 0.802 pDC L2
ENSG00000132122 SPATA6 -217661 sc-eQTL 1.33e-01 -0.176 0.116 0.802 pDC L2
ENSG00000162368 CMPK1 920750 sc-eQTL 6.76e-01 -0.0475 0.114 0.802 pDC L2
ENSG00000162373 BEND5 -522422 sc-eQTL 2.12e-01 -0.139 0.111 0.802 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000132122 SPATA6 -217661 sc-eQTL 5.79e-01 0.0553 0.0994 0.782 B_Memory LOneK1K
ENSG00000162368 CMPK1 920750 sc-eQTL 1.18e-01 0.124 0.0792 0.782 B_Memory LOneK1K
ENSG00000162373 BEND5 -522422 sc-eQTL 5.43e-01 -0.0508 0.0834 0.782 B_Memory LOneK1K
ENSG00000132122 SPATA6 -217661 sc-eQTL 8.89e-01 -0.0143 0.103 0.782 B_Naive LOneK1K
ENSG00000162368 CMPK1 920750 sc-eQTL 3.74e-01 0.0713 0.08 0.782 B_Naive LOneK1K
ENSG00000162373 BEND5 -522422 sc-eQTL 4.02e-01 -0.0496 0.0591 0.782 B_Naive LOneK1K
ENSG00000132122 SPATA6 -217661 sc-eQTL 1.65e-01 0.117 0.0842 0.782 CD14_Mono LOneK1K
ENSG00000162368 CMPK1 920750 sc-eQTL 3.47e-01 0.0689 0.0731 0.782 CD14_Mono LOneK1K
ENSG00000132122 SPATA6 -217661 sc-eQTL 3.92e-01 0.0647 0.0755 0.782 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 920750 sc-eQTL 7.03e-01 -0.0337 0.0882 0.782 CD16_Mono LOneK1K
ENSG00000162368 CMPK1 920750 sc-eQTL 3.71e-01 -0.0566 0.0631 0.78 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117834 SLC5A9 31862 eQTL 0.0678 -0.0314 0.0172 0.0 0.00165 0.263
ENSG00000132122 SPATA6 -217661 eQTL 0.000266 -0.0729 0.0199 0.0014 0.0 0.263
ENSG00000272491 AL109659.2 24986 eQTL 0.00106 0.113 0.0344 0.0 0.0 0.263

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117834 SLC5A9 31862 2.17e-05 3.01e-05 3.68e-06 1.35e-05 3.64e-06 9.14e-06 3.58e-05 3.74e-06 2.41e-05 1.02e-05 3.13e-05 1.11e-05 4.23e-05 1.03e-05 5.5e-06 1.22e-05 1.22e-05 1.88e-05 5.89e-06 4.89e-06 9.17e-06 2.53e-05 2.39e-05 6.12e-06 3.63e-05 5.47e-06 8.66e-06 9.09e-06 2.61e-05 1.99e-05 1.59e-05 1.51e-06 1.67e-06 4.94e-06 8.83e-06 4.06e-06 1.85e-06 2.61e-06 3.46e-06 2.38e-06 1.12e-06 3.36e-05 2.6e-06 2.66e-07 1.93e-06 2.68e-06 2.71e-06 1.12e-06 1.02e-06
ENSG00000235105 \N -181420 5.22e-06 9.23e-06 9.56e-07 5.02e-06 1.57e-06 1.57e-06 8.7e-06 1.18e-06 6.39e-06 3.15e-06 9.93e-06 3.84e-06 1.07e-05 3.88e-06 2.01e-06 4.19e-06 3.63e-06 3.67e-06 1.49e-06 1.17e-06 3.04e-06 6.41e-06 4.8e-06 1.62e-06 1.18e-05 2.14e-06 2.69e-06 1.73e-06 5.81e-06 6.54e-06 4.46e-06 4.03e-07 7.33e-07 1.65e-06 2.42e-06 1.18e-06 9.67e-07 4.6e-07 8.67e-07 3.41e-07 3.03e-07 8.05e-06 6.61e-07 1.69e-07 6.07e-07 1.32e-06 6.48e-07 3.79e-07 3.24e-07
ENSG00000272491 AL109659.2 24986 2.51e-05 3.1e-05 4.28e-06 1.4e-05 4.03e-06 1.04e-05 3.84e-05 3.8e-06 2.55e-05 1.12e-05 3.26e-05 1.23e-05 4.4e-05 1.1e-05 5.81e-06 1.34e-05 1.34e-05 2.01e-05 6.45e-06 5.3e-06 9.81e-06 2.66e-05 2.57e-05 6.73e-06 3.77e-05 5.96e-06 9.55e-06 9.69e-06 2.78e-05 2.13e-05 1.66e-05 1.65e-06 1.88e-06 5.42e-06 9.27e-06 4.49e-06 2.04e-06 2.7e-06 3.6e-06 2.66e-06 1.29e-06 3.49e-05 2.66e-06 2.85e-07 1.95e-06 2.75e-06 3.11e-06 1.29e-06 1.1e-06