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Genes within 1Mb (chr1:47527022:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 910179 sc-eQTL 6.67e-01 0.0779 0.181 0.052 DC L1
ENSG00000123472 ATPAF1 853155 sc-eQTL 7.13e-01 -0.0714 0.194 0.052 DC L1
ENSG00000123473 STIL 212875 sc-eQTL 2.58e-01 0.208 0.184 0.052 DC L1
ENSG00000132122 SPATA6 -945186 sc-eQTL 7.24e-02 -0.37 0.205 0.052 DC L1
ENSG00000142961 MOB3C 910131 sc-eQTL 1.14e-02 0.461 0.18 0.052 DC L1
ENSG00000159658 EFCAB14 807908 sc-eQTL 5.16e-01 0.118 0.181 0.052 DC L1
ENSG00000162366 PDZK1IP1 335978 sc-eQTL 6.29e-01 0.0846 0.175 0.052 DC L1
ENSG00000162368 CMPK1 193225 sc-eQTL 6.81e-01 -0.0711 0.172 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 910179 sc-eQTL 3.04e-01 0.227 0.22 0.05 CD4_CTL L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 2.30e-01 -0.245 0.203 0.05 CD4_CTL L2
ENSG00000132122 SPATA6 -945186 sc-eQTL 6.23e-01 -0.0895 0.182 0.05 CD4_CTL L2
ENSG00000142961 MOB3C 910131 sc-eQTL 8.07e-01 0.049 0.2 0.05 CD4_CTL L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 7.43e-01 -0.0655 0.2 0.05 CD4_CTL L2
ENSG00000162368 CMPK1 193225 sc-eQTL 1.56e-01 -0.292 0.205 0.05 CD4_CTL L2
ENSG00000079277 MKNK1 910179 sc-eQTL 8.10e-01 0.0526 0.219 0.053 CD8_TCM L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 3.85e-01 -0.165 0.189 0.053 CD8_TCM L2
ENSG00000142961 MOB3C 910131 sc-eQTL 9.42e-02 -0.34 0.202 0.053 CD8_TCM L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 3.29e-01 -0.187 0.191 0.053 CD8_TCM L2
ENSG00000162368 CMPK1 193225 sc-eQTL 4.97e-01 -0.122 0.18 0.053 CD8_TCM L2
ENSG00000079277 MKNK1 910179 sc-eQTL 4.75e-01 0.161 0.225 0.05 NK_HLA L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 2.71e-01 0.244 0.221 0.05 NK_HLA L2
ENSG00000142961 MOB3C 910131 sc-eQTL 2.31e-01 -0.245 0.204 0.05 NK_HLA L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 8.06e-01 0.0456 0.185 0.05 NK_HLA L2
ENSG00000162368 CMPK1 193225 sc-eQTL 3.68e-01 -0.185 0.205 0.05 NK_HLA L2
ENSG00000079277 MKNK1 910179 sc-eQTL 6.09e-01 -0.114 0.223 0.05 Pro_T L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 9.04e-01 0.0211 0.175 0.05 Pro_T L2
ENSG00000123473 STIL 212875 sc-eQTL 1.55e-01 -0.193 0.135 0.05 Pro_T L2
ENSG00000142961 MOB3C 910131 sc-eQTL 5.17e-01 0.13 0.201 0.05 Pro_T L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 7.64e-01 0.054 0.179 0.05 Pro_T L2
ENSG00000162368 CMPK1 193225 sc-eQTL 3.19e-01 0.199 0.199 0.05 Pro_T L2
ENSG00000079277 MKNK1 910179 sc-eQTL 4.94e-01 0.128 0.186 0.054 cDC L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 6.99e-01 0.0795 0.205 0.054 cDC L2
ENSG00000123473 STIL 212875 sc-eQTL 7.10e-01 -0.0661 0.178 0.054 cDC L2
ENSG00000132122 SPATA6 -945186 sc-eQTL 4.90e-01 -0.145 0.21 0.054 cDC L2
ENSG00000142961 MOB3C 910131 sc-eQTL 5.15e-01 0.119 0.182 0.054 cDC L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 6.80e-01 0.0846 0.205 0.054 cDC L2
ENSG00000162366 PDZK1IP1 335978 sc-eQTL 7.91e-01 0.0457 0.172 0.054 cDC L2
ENSG00000162368 CMPK1 193225 sc-eQTL 9.07e-01 -0.0225 0.194 0.054 cDC L2
ENSG00000079277 MKNK1 910179 sc-eQTL 2.25e-01 -0.31 0.254 0.052 gdT L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 1.64e-02 -0.531 0.219 0.052 gdT L2
ENSG00000123473 STIL 212875 sc-eQTL 9.22e-01 -0.0195 0.198 0.052 gdT L2
ENSG00000142961 MOB3C 910131 sc-eQTL 8.52e-01 0.044 0.235 0.052 gdT L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 3.28e-01 0.212 0.216 0.052 gdT L2
ENSG00000162368 CMPK1 193225 sc-eQTL 3.43e-01 0.219 0.23 0.052 gdT L2
ENSG00000079277 MKNK1 910179 sc-eQTL 6.45e-01 0.0836 0.181 0.051 intMono L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 6.26e-01 0.105 0.215 0.051 intMono L2
ENSG00000132122 SPATA6 -945186 sc-eQTL 8.66e-01 -0.035 0.207 0.051 intMono L2
ENSG00000142961 MOB3C 910131 sc-eQTL 9.13e-01 0.0233 0.213 0.051 intMono L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 3.54e-01 -0.164 0.177 0.051 intMono L2
ENSG00000162368 CMPK1 193225 sc-eQTL 3.59e-01 0.187 0.204 0.051 intMono L2
ENSG00000079277 MKNK1 910179 sc-eQTL 9.19e-01 -0.0214 0.211 0.059 pDC L2
ENSG00000123472 ATPAF1 853155 sc-eQTL 8.11e-01 -0.0521 0.217 0.059 pDC L2
ENSG00000123473 STIL 212875 sc-eQTL 5.18e-01 0.115 0.178 0.059 pDC L2
ENSG00000132122 SPATA6 -945186 sc-eQTL 3.33e-01 -0.196 0.202 0.059 pDC L2
ENSG00000142961 MOB3C 910131 sc-eQTL 9.83e-04 0.664 0.198 0.059 pDC L2
ENSG00000159658 EFCAB14 807908 sc-eQTL 2.38e-01 -0.217 0.183 0.059 pDC L2
ENSG00000162366 PDZK1IP1 335978 sc-eQTL 9.84e-01 -0.00324 0.164 0.059 pDC L2
ENSG00000162368 CMPK1 193225 sc-eQTL 7.55e-01 0.0613 0.196 0.059 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000159658 EFCAB14 807908 eQTL 0.00909 -0.109 0.0417 0.0 0.0 0.0564
ENSG00000162366 PDZK1IP1 335978 eQTL 0.0479 0.122 0.0617 0.0 0.0 0.0564
ENSG00000224805 LINC00853 347772 eQTL 0.00216 -0.134 0.0437 0.0 0.0 0.0564
ENSG00000237424 FOXD2-AS1 92381 eQTL 0.776 -0.0153 0.0538 0.00136 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000159658 EFCAB14 807908 2.91e-07 1.36e-07 5.72e-08 1.89e-07 9.8e-08 8.45e-08 1.81e-07 5.85e-08 1.44e-07 6.75e-08 1.59e-07 1.15e-07 1.79e-07 7.64e-08 5.72e-08 7.89e-08 4.31e-08 1.56e-07 6.92e-08 4.8e-08 1.25e-07 1.31e-07 1.58e-07 2.83e-08 1.68e-07 1.26e-07 1.12e-07 1.04e-07 1.26e-07 1.03e-07 1.07e-07 2.93e-08 3.51e-08 8.89e-08 3.46e-08 3.05e-08 5.61e-08 8.72e-08 6.71e-08 3.67e-08 5.54e-08 1.46e-07 5.24e-08 1.61e-08 3.81e-08 1.92e-08 1.11e-07 1.88e-09 4.8e-08
ENSG00000224805 LINC00853 347772 1.22e-06 8.72e-07 2.95e-07 3.4e-07 2.1e-07 3.2e-07 9.43e-07 3.45e-07 1.14e-06 3.28e-07 1.25e-06 5.68e-07 1.46e-06 2.19e-07 4.6e-07 6.35e-07 7.78e-07 5.65e-07 3.95e-07 4.32e-07 2.97e-07 9.14e-07 6.63e-07 5.39e-07 1.72e-06 2.99e-07 6.16e-07 4.96e-07 8.81e-07 9.45e-07 4.71e-07 3.7e-08 1.5e-07 4.16e-07 3.29e-07 3.35e-07 3.14e-07 1.42e-07 1.38e-07 4.17e-08 3.02e-07 1.23e-06 6.75e-08 1.25e-08 1.82e-07 5.38e-08 1.71e-07 7.35e-08 8.28e-08