Genes within 1Mb (chr1:47453336:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079277 MKNK1 836493 eQTL 1.16e-02 -0.0349 0.0138 0.0 0.0 0.259
ENSG00000123472 ATPAF1 779469 eQTL 4.53e-04 -0.0753 0.0214 0.0 0.0 0.259
ENSG00000159658 EFCAB14 734222 eQTL 1.46e-02 0.0517 0.0211 0.0 0.0 0.259
ENSG00000162366 PDZK1IP1 262292 eQTL 2.05e-26 -0.323 0.0295 0.0 0.0 0.259
ENSG00000162368 CMPK1 119539 eQTL 4.83e-02 -0.0225 0.0114 0.0 0.0 0.259
ENSG00000186564 FOXD2 17319 eQTL 2.84e-03 -0.0811 0.0271 0.00183 0.0 0.259
ENSG00000237424 FOXD2-AS1 18695 eQTL 9.12e-14 -0.2 0.0265 0.00143 0.00275 0.259


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079277 MKNK1 836493 2.77e-07 1.35e-07 6.04e-08 1.89e-07 9.94e-08 8.21e-08 1.73e-07 5.75e-08 1.5e-07 6.75e-08 1.73e-07 1.15e-07 1.71e-07 7.64e-08 5.94e-08 7.74e-08 4.31e-08 1.56e-07 7.12e-08 5.07e-08 1.27e-07 1.31e-07 1.5e-07 2.68e-08 1.65e-07 1.23e-07 1.17e-07 1.06e-07 1.24e-07 1.03e-07 1.08e-07 3.68e-08 3.21e-08 8.7e-08 2.97e-08 3.05e-08 5.7e-08 8.57e-08 6.67e-08 4.08e-08 5.87e-08 1.46e-07 5.27e-08 7.56e-09 3.07e-08 1.55e-08 8.81e-08 2.05e-09 4.83e-08
ENSG00000123472 ATPAF1 779469 3.02e-07 1.42e-07 6.41e-08 2.05e-07 1.05e-07 8.37e-08 1.99e-07 5.56e-08 1.54e-07 8.53e-08 1.62e-07 1.22e-07 1.95e-07 8.13e-08 5.69e-08 7.98e-08 4.31e-08 1.72e-07 7.09e-08 5.48e-08 1.18e-07 1.47e-07 1.58e-07 3.49e-08 1.85e-07 1.31e-07 1.2e-07 1.1e-07 1.34e-07 1.06e-07 1.06e-07 4.77e-08 3.65e-08 9.76e-08 3.57e-08 2.68e-08 5.51e-08 7.63e-08 6.28e-08 5.35e-08 5.04e-08 1.46e-07 4.17e-08 1.1e-08 3.4e-08 8.31e-09 7.92e-08 2.16e-09 4.91e-08
ENSG00000142961 \N 836445 2.77e-07 1.35e-07 6.04e-08 1.89e-07 9.94e-08 8.21e-08 1.73e-07 5.75e-08 1.5e-07 6.75e-08 1.73e-07 1.15e-07 1.71e-07 7.64e-08 5.94e-08 7.74e-08 4.31e-08 1.56e-07 7.12e-08 5.07e-08 1.27e-07 1.31e-07 1.5e-07 2.68e-08 1.68e-07 1.23e-07 1.17e-07 1.06e-07 1.24e-07 1.03e-07 1.08e-07 3.68e-08 3.21e-08 8.7e-08 2.97e-08 3.05e-08 5.7e-08 8.57e-08 6.67e-08 4.08e-08 5.87e-08 1.46e-07 5.27e-08 7.56e-09 3.07e-08 1.55e-08 8.81e-08 2.05e-09 4.83e-08
ENSG00000159658 EFCAB14 734222 3.14e-07 1.53e-07 6.45e-08 2.15e-07 1.08e-07 8.75e-08 2.16e-07 5.82e-08 1.71e-07 9.72e-08 1.66e-07 1.31e-07 2.24e-07 8.07e-08 6.12e-08 9.01e-08 4.25e-08 1.8e-07 7.29e-08 6.03e-08 1.26e-07 1.7e-07 1.64e-07 3.59e-08 2.02e-07 1.39e-07 1.29e-07 1.26e-07 1.32e-07 1.24e-07 1.14e-07 4.58e-08 3.8e-08 9.81e-08 4.78e-08 2.68e-08 4.28e-08 6.98e-08 6.35e-08 6.31e-08 5.1e-08 1.52e-07 3.4e-08 1.43e-08 3.61e-08 6.83e-09 7.12e-08 0.0 4.67e-08
ENSG00000162366 PDZK1IP1 262292 1.43e-06 1.38e-06 2.5e-07 1.27e-06 4.72e-07 6.45e-07 1.5e-06 4.17e-07 1.75e-06 7.1e-07 2.04e-06 9.81e-07 2.56e-06 3.31e-07 3.96e-07 1e-06 9.94e-07 1.14e-06 5.75e-07 4.92e-07 7.33e-07 1.98e-06 1.12e-06 6.34e-07 2.41e-06 7.8e-07 1.01e-06 8.75e-07 1.63e-06 1.34e-06 8.51e-07 2.81e-07 3.76e-07 5.53e-07 6.12e-07 5.39e-07 7.46e-07 3.43e-07 4.69e-07 2.22e-07 3.02e-07 1.64e-06 2.9e-07 1.31e-07 3.76e-07 3.02e-07 2.94e-07 2.23e-07 2.71e-07
ENSG00000224805 \N 274086 1.31e-06 1.13e-06 2.53e-07 1.13e-06 4.25e-07 6.09e-07 1.5e-06 4.16e-07 1.66e-06 6.2e-07 2.03e-06 8.93e-07 2.45e-06 2.98e-07 4.55e-07 9.67e-07 1.03e-06 9.53e-07 6.56e-07 4.42e-07 7.86e-07 1.89e-06 1.03e-06 5.91e-07 2.26e-06 7.53e-07 1.06e-06 8.14e-07 1.62e-06 1.17e-06 7.64e-07 2.45e-07 3.27e-07 5.94e-07 5.64e-07 4.86e-07 6.79e-07 3.42e-07 4.63e-07 2.44e-07 3.57e-07 1.6e-06 1.94e-07 1.14e-07 3.14e-07 2.03e-07 2.71e-07 1.57e-07 2.57e-07
ENSG00000237424 FOXD2-AS1 18695 1.77e-05 2.06e-05 4.47e-06 1.26e-05 4.21e-06 1.04e-05 2.91e-05 3.72e-06 2e-05 1.02e-05 2.66e-05 9.95e-06 3.72e-05 8.95e-06 5.6e-06 1.21e-05 1.13e-05 1.87e-05 6.95e-06 5.93e-06 1.09e-05 2.18e-05 2.17e-05 8.47e-06 3.26e-05 6.27e-06 9.03e-06 9e-06 2.39e-05 2.53e-05 1.29e-05 1.61e-06 2.62e-06 7.05e-06 9.06e-06 5.47e-06 3.22e-06 3.19e-06 4.84e-06 3.56e-06 1.81e-06 2.55e-05 2.67e-06 4.16e-07 2.27e-06 3.29e-06 3.8e-06 1.58e-06 1.53e-06