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Genes within 1Mb (chr1:47179230:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 562387 sc-eQTL 7.03e-01 0.0874 0.229 0.949 B_Activated L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 9.61e-01 0.0103 0.213 0.949 B_Activated L2
ENSG00000117481 NSUN4 839053 sc-eQTL 3.92e-01 0.185 0.216 0.949 B_Activated L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 9.57e-01 0.0118 0.218 0.949 B_Activated L2
ENSG00000132128 LRRC41 875622 sc-eQTL 6.11e-01 0.107 0.21 0.949 B_Activated L2
ENSG00000142961 MOB3C 562339 sc-eQTL 1.90e-01 0.242 0.184 0.949 B_Activated L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 4.15e-01 0.184 0.225 0.949 B_Activated L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 1.40e-01 -0.314 0.212 0.949 B_Activated L2
ENSG00000173660 UQCRH 875532 sc-eQTL 9.54e-01 0.0107 0.186 0.949 B_Activated L2
ENSG00000079277 MKNK1 562387 sc-eQTL 6.30e-01 0.0985 0.204 0.948 CD4_CTL L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 9.40e-02 0.32 0.19 0.948 CD4_CTL L2
ENSG00000117481 NSUN4 839053 sc-eQTL 3.79e-01 0.167 0.189 0.948 CD4_CTL L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 5.61e-02 -0.359 0.187 0.948 CD4_CTL L2
ENSG00000132128 LRRC41 875622 sc-eQTL 4.89e-01 0.137 0.197 0.948 CD4_CTL L2
ENSG00000142961 MOB3C 562339 sc-eQTL 4.77e-01 0.131 0.184 0.948 CD4_CTL L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 2.38e-01 0.218 0.184 0.948 CD4_CTL L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 1.12e-02 -0.48 0.187 0.948 CD4_CTL L2
ENSG00000173660 UQCRH 875532 sc-eQTL 9.96e-01 -0.000904 0.175 0.948 CD4_CTL L2
ENSG00000079277 MKNK1 562387 sc-eQTL 5.85e-02 0.385 0.202 0.949 CD8_TCM L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 4.83e-01 -0.136 0.194 0.949 CD8_TCM L2
ENSG00000117481 NSUN4 839053 sc-eQTL 6.91e-01 -0.08 0.201 0.949 CD8_TCM L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 5.02e-01 0.119 0.176 0.949 CD8_TCM L2
ENSG00000132128 LRRC41 875622 sc-eQTL 9.63e-01 -0.00908 0.197 0.949 CD8_TCM L2
ENSG00000142961 MOB3C 562339 sc-eQTL 2.21e-01 -0.232 0.189 0.949 CD8_TCM L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 4.12e-01 -0.147 0.179 0.949 CD8_TCM L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 4.02e-01 -0.141 0.168 0.949 CD8_TCM L2
ENSG00000173660 UQCRH 875532 sc-eQTL 7.96e-02 -0.313 0.177 0.949 CD8_TCM L2
ENSG00000079277 MKNK1 562387 sc-eQTL 5.70e-01 -0.121 0.213 0.947 CD8_TEM L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 1.30e-01 0.315 0.207 0.947 CD8_TEM L2
ENSG00000117481 NSUN4 839053 sc-eQTL 6.30e-01 -0.1 0.208 0.947 CD8_TEM L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 6.09e-01 0.1 0.195 0.947 CD8_TEM L2
ENSG00000132128 LRRC41 875622 sc-eQTL 9.83e-01 -0.00434 0.199 0.947 CD8_TEM L2
ENSG00000142961 MOB3C 562339 sc-eQTL 9.97e-02 -0.321 0.194 0.947 CD8_TEM L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 4.65e-01 0.142 0.194 0.947 CD8_TEM L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 7.63e-01 0.0584 0.193 0.947 CD8_TEM L2
ENSG00000173660 UQCRH 875532 sc-eQTL 2.94e-02 -0.395 0.18 0.947 CD8_TEM L2
ENSG00000079277 MKNK1 562387 sc-eQTL 7.10e-01 0.0751 0.201 0.949 NK_CD56bright L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 7.01e-01 -0.0767 0.2 0.949 NK_CD56bright L2
ENSG00000117481 NSUN4 839053 sc-eQTL 1.28e-01 -0.279 0.182 0.949 NK_CD56bright L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 3.68e-01 0.165 0.183 0.949 NK_CD56bright L2
ENSG00000132128 LRRC41 875622 sc-eQTL 6.76e-01 0.0801 0.192 0.949 NK_CD56bright L2
ENSG00000142961 MOB3C 562339 sc-eQTL 9.33e-01 -0.0159 0.188 0.949 NK_CD56bright L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 1.90e-01 0.244 0.186 0.949 NK_CD56bright L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 1.40e-01 -0.276 0.186 0.949 NK_CD56bright L2
ENSG00000173660 UQCRH 875532 sc-eQTL 5.83e-01 -0.0888 0.162 0.949 NK_CD56bright L2
ENSG00000079277 MKNK1 562387 sc-eQTL 3.60e-01 0.192 0.209 0.95 Pro_T L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 8.62e-01 0.0335 0.193 0.95 Pro_T L2
ENSG00000085999 RAD54L 932769 sc-eQTL 3.38e-01 -0.138 0.143 0.95 Pro_T L2
ENSG00000117481 NSUN4 839053 sc-eQTL 4.05e-01 -0.17 0.204 0.95 Pro_T L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 2.79e-01 -0.178 0.164 0.95 Pro_T L2
ENSG00000123473 STIL -134917 sc-eQTL 1.24e-01 -0.196 0.127 0.95 Pro_T L2
ENSG00000132128 LRRC41 875622 sc-eQTL 4.11e-01 -0.154 0.186 0.95 Pro_T L2
ENSG00000142961 MOB3C 562339 sc-eQTL 3.29e-01 -0.185 0.189 0.95 Pro_T L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 6.95e-01 0.0663 0.169 0.95 Pro_T L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 8.14e-01 0.0442 0.187 0.95 Pro_T L2
ENSG00000173660 UQCRH 875532 sc-eQTL 1.35e-01 -0.182 0.122 0.95 Pro_T L2
ENSG00000079277 MKNK1 562387 sc-eQTL 5.24e-01 0.144 0.225 0.939 gdT L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 9.66e-01 0.0093 0.216 0.939 gdT L2
ENSG00000085999 RAD54L 932769 sc-eQTL 8.58e-01 -0.0269 0.15 0.939 gdT L2
ENSG00000117481 NSUN4 839053 sc-eQTL 7.87e-01 -0.0606 0.224 0.939 gdT L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 3.24e-01 0.194 0.196 0.939 gdT L2
ENSG00000123473 STIL -134917 sc-eQTL 9.45e-01 -0.0121 0.174 0.939 gdT L2
ENSG00000132128 LRRC41 875622 sc-eQTL 4.77e-01 -0.155 0.217 0.939 gdT L2
ENSG00000142961 MOB3C 562339 sc-eQTL 6.47e-01 -0.0951 0.207 0.939 gdT L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 4.11e-01 -0.157 0.19 0.939 gdT L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 3.80e-01 0.178 0.202 0.939 gdT L2
ENSG00000173660 UQCRH 875532 sc-eQTL 2.47e-01 -0.228 0.196 0.939 gdT L2
ENSG00000079277 MKNK1 562387 sc-eQTL 8.28e-02 -0.363 0.208 0.949 pDC L2
ENSG00000085998 POMGNT1 958925 sc-eQTL 5.60e-02 -0.328 0.17 0.949 pDC L2
ENSG00000117480 FAAH 784913 sc-eQTL 6.52e-01 -0.0754 0.167 0.949 pDC L2
ENSG00000117481 NSUN4 839053 sc-eQTL 1.99e-01 -0.258 0.2 0.949 pDC L2
ENSG00000123472 ATPAF1 505363 sc-eQTL 3.59e-01 0.198 0.215 0.949 pDC L2
ENSG00000123473 STIL -134917 sc-eQTL 6.59e-01 -0.0784 0.177 0.949 pDC L2
ENSG00000132128 LRRC41 875622 sc-eQTL 4.28e-02 -0.429 0.21 0.949 pDC L2
ENSG00000142961 MOB3C 562339 sc-eQTL 8.09e-01 0.0493 0.204 0.949 pDC L2
ENSG00000159658 EFCAB14 460116 sc-eQTL 2.63e-01 -0.204 0.182 0.949 pDC L2
ENSG00000162366 PDZK1IP1 -11814 sc-eQTL 4.36e-04 -0.563 0.157 0.949 pDC L2
ENSG00000162368 CMPK1 -154567 sc-eQTL 8.62e-01 0.0338 0.195 0.949 pDC L2
ENSG00000173660 UQCRH 875532 sc-eQTL 4.13e-01 -0.135 0.164 0.949 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117480 FAAH 784913 eQTL 0.0495 -0.104 0.0531 0.0 0.0 0.0437
ENSG00000162366 PDZK1IP1 -11814 eQTL 0.000403 -0.25 0.0703 0.0 0.0 0.0437
ENSG00000162367 TAL1 -52990 eQTL 0.00559 0.0943 0.0339 0.0027 0.0 0.0437
ENSG00000162368 CMPK1 -154567 eQTL 0.0187 -0.0605 0.0257 0.0 0.0 0.0437

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123472 \N 505363 2.56e-07 1.11e-07 3.28e-08 1.66e-07 1.02e-07 9.14e-08 1.36e-07 5.29e-08 1.32e-07 3.99e-08 1.59e-07 7.49e-08 1.2e-07 6.1e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.33e-07 1.03e-07 1.12e-07 8.27e-08 1.05e-07 1.09e-07 9.5e-08 3.19e-08 2.6e-08 8.09e-08 1.03e-07 4.23e-08 4.7e-08 8.28e-08 8.39e-08 3.96e-08 2.6e-08 1.39e-07 4.33e-08 1.85e-08 1.15e-07 1.83e-08 1.46e-07 4.82e-09 4.61e-08
ENSG00000162366 PDZK1IP1 -11814 0.000114 7.84e-05 1.02e-05 2.54e-05 9.12e-06 2.71e-05 7.39e-05 8.02e-06 5.94e-05 2.65e-05 7.85e-05 3.25e-05 0.000118 2.16e-05 1.19e-05 4.49e-05 3.65e-05 4.77e-05 1.38e-05 1.24e-05 2.64e-05 7.56e-05 5.88e-05 1.99e-05 8.19e-05 1.8e-05 2.52e-05 2.28e-05 6.16e-05 4.65e-05 4.19e-05 3.79e-06 7.03e-06 9.72e-06 1.81e-05 1.08e-05 5.31e-06 5.96e-06 7.25e-06 4.53e-06 2.02e-06 8.87e-05 7.47e-06 8.26e-07 4.97e-06 8.34e-06 7.64e-06 3.02e-06 2.78e-06
ENSG00000224805 \N -20 0.000987 0.00135 0.000331 0.000641 0.000442 0.000577 0.00135 0.000309 0.00142 0.000654 0.00146 0.000781 0.00218 0.000531 0.000331 0.000635 0.00061 0.00106 0.000608 0.000283 0.00101 0.00105 0.00126 0.00039 0.00168 0.000483 0.000607 0.00095 0.00163 0.000509 0.00096 0.000151 0.000175 0.000344 0.000426 0.000288 0.000202 0.000189 0.000233 0.000246 0.000133 0.00113 0.000162 3.07e-05 0.000108 0.000369 0.000235 0.000173 0.000133