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Genes within 1Mb (chr1:46863709:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 246866 sc-eQTL 8.59e-01 -0.0305 0.171 0.052 DC L1
ENSG00000085998 POMGNT1 643404 sc-eQTL 2.00e-01 0.187 0.145 0.052 DC L1
ENSG00000117480 FAAH 469392 sc-eQTL 7.56e-01 0.0447 0.143 0.052 DC L1
ENSG00000117481 NSUN4 523532 sc-eQTL 5.32e-01 -0.114 0.182 0.052 DC L1
ENSG00000123472 ATPAF1 189842 sc-eQTL 3.24e-01 -0.181 0.183 0.052 DC L1
ENSG00000123473 STIL -450438 sc-eQTL 3.27e-01 -0.171 0.174 0.052 DC L1
ENSG00000132128 LRRC41 560101 sc-eQTL 1.45e-01 0.254 0.174 0.052 DC L1
ENSG00000142961 MOB3C 246818 sc-eQTL 1.34e-01 -0.26 0.173 0.052 DC L1
ENSG00000159658 EFCAB14 144595 sc-eQTL 3.19e-01 0.171 0.171 0.052 DC L1
ENSG00000162366 PDZK1IP1 -327335 sc-eQTL 6.97e-01 -0.0646 0.166 0.052 DC L1
ENSG00000162368 CMPK1 -470088 sc-eQTL 9.30e-01 0.0143 0.164 0.052 DC L1
ENSG00000173660 UQCRH 560011 sc-eQTL 5.38e-01 0.0602 0.0976 0.052 DC L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 246866 sc-eQTL 3.84e-01 -0.193 0.222 0.051 B_Activated L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 8.36e-01 0.0429 0.207 0.051 B_Activated L2
ENSG00000117481 NSUN4 523532 sc-eQTL 6.16e-02 -0.391 0.208 0.051 B_Activated L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 1.04e-01 0.344 0.211 0.051 B_Activated L2
ENSG00000132128 LRRC41 560101 sc-eQTL 4.96e-01 0.139 0.204 0.051 B_Activated L2
ENSG00000142961 MOB3C 246818 sc-eQTL 5.04e-01 -0.12 0.179 0.051 B_Activated L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 4.18e-01 0.177 0.219 0.051 B_Activated L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 7.94e-01 -0.0541 0.207 0.051 B_Activated L2
ENSG00000173660 UQCRH 560011 sc-eQTL 3.87e-01 0.156 0.18 0.051 B_Activated L2
ENSG00000079277 MKNK1 246866 sc-eQTL 2.14e-01 0.259 0.208 0.05 CD8_TEM L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 4.95e-01 -0.139 0.204 0.05 CD8_TEM L2
ENSG00000117461 PIK3R3 730673 sc-eQTL 3.86e-01 0.161 0.185 0.05 CD8_TEM L2
ENSG00000117481 NSUN4 523532 sc-eQTL 9.51e-01 0.0125 0.203 0.05 CD8_TEM L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 7.80e-01 -0.0536 0.191 0.05 CD8_TEM L2
ENSG00000132128 LRRC41 560101 sc-eQTL 9.99e-01 0.000189 0.195 0.05 CD8_TEM L2
ENSG00000142961 MOB3C 246818 sc-eQTL 5.05e-01 0.127 0.191 0.05 CD8_TEM L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 1.75e-01 0.257 0.189 0.05 CD8_TEM L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 9.94e-01 -0.00148 0.189 0.05 CD8_TEM L2
ENSG00000173660 UQCRH 560011 sc-eQTL 9.51e-01 -0.011 0.178 0.05 CD8_TEM L2
ENSG00000079277 MKNK1 246866 sc-eQTL 8.23e-01 -0.0453 0.202 0.051 NK_CD56bright L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 9.79e-01 -0.00531 0.2 0.051 NK_CD56bright L2
ENSG00000117461 PIK3R3 730673 sc-eQTL 6.23e-01 -0.0908 0.184 0.051 NK_CD56bright L2
ENSG00000117481 NSUN4 523532 sc-eQTL 7.52e-01 -0.0581 0.183 0.051 NK_CD56bright L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 9.70e-01 -0.00684 0.183 0.051 NK_CD56bright L2
ENSG00000132128 LRRC41 560101 sc-eQTL 8.46e-01 -0.0372 0.192 0.051 NK_CD56bright L2
ENSG00000142961 MOB3C 246818 sc-eQTL 9.37e-01 0.015 0.189 0.051 NK_CD56bright L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 1.78e-01 0.251 0.186 0.051 NK_CD56bright L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 3.96e-03 0.535 0.184 0.051 NK_CD56bright L2
ENSG00000173660 UQCRH 560011 sc-eQTL 6.16e-01 0.0812 0.162 0.051 NK_CD56bright L2
ENSG00000079277 MKNK1 246866 sc-eQTL 7.54e-01 0.0631 0.201 0.053 NK_HLA L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 3.90e-01 0.154 0.179 0.053 NK_HLA L2
ENSG00000117461 PIK3R3 730673 sc-eQTL 5.21e-02 0.37 0.189 0.053 NK_HLA L2
ENSG00000117481 NSUN4 523532 sc-eQTL 7.30e-01 0.0688 0.199 0.053 NK_HLA L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 7.36e-01 -0.0666 0.197 0.053 NK_HLA L2
ENSG00000132128 LRRC41 560101 sc-eQTL 7.35e-01 -0.0672 0.199 0.053 NK_HLA L2
ENSG00000142961 MOB3C 246818 sc-eQTL 7.14e-01 0.0669 0.182 0.053 NK_HLA L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 6.87e-01 0.0666 0.165 0.053 NK_HLA L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 6.56e-01 -0.0818 0.183 0.053 NK_HLA L2
ENSG00000173660 UQCRH 560011 sc-eQTL 7.64e-01 -0.0536 0.178 0.053 NK_HLA L2
ENSG00000079277 MKNK1 246866 sc-eQTL 8.85e-01 -0.0303 0.209 0.05 Pro_T L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 3.50e-01 -0.18 0.192 0.05 Pro_T L2
ENSG00000085999 RAD54L 617248 sc-eQTL 4.36e-01 -0.112 0.143 0.05 Pro_T L2
ENSG00000117461 PIK3R3 730673 sc-eQTL 5.16e-01 0.12 0.185 0.05 Pro_T L2
ENSG00000117481 NSUN4 523532 sc-eQTL 2.89e-01 -0.217 0.204 0.05 Pro_T L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 5.28e-01 0.104 0.164 0.05 Pro_T L2
ENSG00000123473 STIL -450438 sc-eQTL 4.23e-01 -0.102 0.127 0.05 Pro_T L2
ENSG00000132128 LRRC41 560101 sc-eQTL 4.33e-01 0.146 0.186 0.05 Pro_T L2
ENSG00000142961 MOB3C 246818 sc-eQTL 3.04e-01 -0.194 0.188 0.05 Pro_T L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 6.57e-01 -0.075 0.169 0.05 Pro_T L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 9.28e-01 0.0168 0.187 0.05 Pro_T L2
ENSG00000173660 UQCRH 560011 sc-eQTL 6.24e-01 0.0598 0.122 0.05 Pro_T L2
ENSG00000079277 MKNK1 246866 sc-eQTL 3.55e-02 0.368 0.174 0.054 cDC L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 7.94e-01 -0.0507 0.194 0.054 cDC L2
ENSG00000117480 FAAH 469392 sc-eQTL 7.88e-01 0.0513 0.191 0.054 cDC L2
ENSG00000117481 NSUN4 523532 sc-eQTL 6.72e-01 -0.0839 0.198 0.054 cDC L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 4.29e-01 0.153 0.193 0.054 cDC L2
ENSG00000123473 STIL -450438 sc-eQTL 1.49e-01 0.242 0.167 0.054 cDC L2
ENSG00000132128 LRRC41 560101 sc-eQTL 6.93e-02 0.351 0.192 0.054 cDC L2
ENSG00000142961 MOB3C 246818 sc-eQTL 7.50e-01 -0.0549 0.172 0.054 cDC L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 7.70e-01 0.0566 0.194 0.054 cDC L2
ENSG00000162366 PDZK1IP1 -327335 sc-eQTL 3.15e-01 -0.163 0.162 0.054 cDC L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 1.34e-01 -0.273 0.182 0.054 cDC L2
ENSG00000173660 UQCRH 560011 sc-eQTL 5.51e-01 0.0731 0.122 0.054 cDC L2
ENSG00000079277 MKNK1 246866 sc-eQTL 2.32e-01 -0.204 0.17 0.051 intMono L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 1.66e-01 -0.263 0.189 0.051 intMono L2
ENSG00000117480 FAAH 469392 sc-eQTL 6.76e-02 0.348 0.19 0.051 intMono L2
ENSG00000117481 NSUN4 523532 sc-eQTL 3.56e-01 0.183 0.198 0.051 intMono L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 3.82e-01 -0.177 0.202 0.051 intMono L2
ENSG00000132128 LRRC41 560101 sc-eQTL 3.11e-01 0.212 0.208 0.051 intMono L2
ENSG00000142961 MOB3C 246818 sc-eQTL 3.47e-01 0.188 0.2 0.051 intMono L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 6.85e-01 -0.0677 0.167 0.051 intMono L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 5.60e-01 -0.112 0.192 0.051 intMono L2
ENSG00000173660 UQCRH 560011 sc-eQTL 3.68e-01 -0.128 0.142 0.051 intMono L2
ENSG00000079277 MKNK1 246866 sc-eQTL 4.51e-01 -0.113 0.15 0.052 ncMono L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 5.33e-01 0.111 0.178 0.052 ncMono L2
ENSG00000117480 FAAH 469392 sc-eQTL 3.31e-01 0.187 0.192 0.052 ncMono L2
ENSG00000117481 NSUN4 523532 sc-eQTL 7.18e-01 0.0708 0.196 0.052 ncMono L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 1.26e-01 0.283 0.184 0.052 ncMono L2
ENSG00000132128 LRRC41 560101 sc-eQTL 5.93e-01 -0.108 0.203 0.052 ncMono L2
ENSG00000142961 MOB3C 246818 sc-eQTL 7.74e-01 0.0558 0.194 0.052 ncMono L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 6.01e-01 0.0961 0.183 0.052 ncMono L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 7.19e-01 0.0646 0.179 0.052 ncMono L2
ENSG00000173660 UQCRH 560011 sc-eQTL 2.30e-02 -0.276 0.121 0.052 ncMono L2
ENSG00000079277 MKNK1 246866 sc-eQTL 2.44e-01 -0.235 0.201 0.054 pDC L2
ENSG00000085998 POMGNT1 643404 sc-eQTL 3.32e-01 0.161 0.165 0.054 pDC L2
ENSG00000117480 FAAH 469392 sc-eQTL 1.29e-01 0.243 0.159 0.054 pDC L2
ENSG00000117481 NSUN4 523532 sc-eQTL 2.15e-01 0.24 0.192 0.054 pDC L2
ENSG00000123472 ATPAF1 189842 sc-eQTL 3.10e-02 -0.446 0.205 0.054 pDC L2
ENSG00000123473 STIL -450438 sc-eQTL 1.39e-02 -0.416 0.167 0.054 pDC L2
ENSG00000132128 LRRC41 560101 sc-eQTL 8.18e-01 0.0473 0.205 0.054 pDC L2
ENSG00000142961 MOB3C 246818 sc-eQTL 1.44e-01 -0.285 0.195 0.054 pDC L2
ENSG00000159658 EFCAB14 144595 sc-eQTL 1.01e-01 0.288 0.174 0.054 pDC L2
ENSG00000162366 PDZK1IP1 -327335 sc-eQTL 9.80e-01 0.00391 0.157 0.054 pDC L2
ENSG00000162368 CMPK1 -470088 sc-eQTL 8.65e-02 0.32 0.186 0.054 pDC L2
ENSG00000173660 UQCRH 560011 sc-eQTL 4.52e-01 -0.119 0.158 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000085998 POMGNT1 643404 eQTL 0.0447 -0.0396 0.0197 0.0 0.0 0.08
ENSG00000123472 ATPAF1 189842 eQTL 0.0491 -0.0717 0.0364 0.0 0.0 0.08

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000123472 ATPAF1 189842 3.58e-06 4.28e-06 1.21e-06 3.09e-06 1.32e-06 1.35e-06 2.48e-06 9.27e-07 5.14e-06 1.99e-06 4.21e-06 3.56e-06 7.5e-06 1.24e-06 1.41e-06 2.43e-06 1.82e-06 2.74e-06 1.57e-06 1.69e-06 1.93e-06 4.14e-06 3.21e-06 1.92e-06 4.31e-06 1.32e-06 2.15e-06 1.78e-06 3.81e-06 4.13e-06 2.02e-06 4.84e-07 5.38e-07 1.71e-06 2.15e-06 9.03e-07 1.14e-06 1.25e-06 1.19e-06 3.62e-07 4.32e-07 3.37e-06 8.75e-07 1.67e-07 3.58e-07 8.79e-07 1.15e-06 6.8e-07 4.68e-07
ENSG00000159658 \N 144595 5.11e-06 6.3e-06 2.05e-06 4.57e-06 1.89e-06 2.1e-06 8.04e-06 1.25e-06 6.07e-06 3.42e-06 9.14e-06 3.74e-06 1.12e-05 1.91e-06 1.29e-06 4.58e-06 2.72e-06 3.84e-06 2.24e-06 2.82e-06 2.66e-06 7.38e-06 4.66e-06 3.36e-06 8.26e-06 2.27e-06 3.4e-06 3.88e-06 5.45e-06 7.53e-06 3.42e-06 1.07e-06 1.09e-06 2.74e-06 2.74e-06 1.84e-06 1.78e-06 1.96e-06 1.41e-06 7.35e-07 8.93e-07 5.62e-06 1.46e-06 2.22e-07 7.73e-07 1.81e-06 1.29e-06 8.03e-07 5.25e-07
ENSG00000224805 \N -315541 1.27e-06 9.73e-07 6.93e-07 1.23e-06 3.5e-07 6.27e-07 1.38e-06 3.52e-07 1.78e-06 4.78e-07 1.79e-06 7.84e-07 2.55e-06 2.55e-07 5.4e-07 8.48e-07 8.06e-07 6.94e-07 5.54e-07 5.9e-07 6.12e-07 1.63e-06 9.28e-07 7.1e-07 1.96e-06 4.39e-07 7.97e-07 9.81e-07 1.31e-06 1.3e-06 6.63e-07 2.62e-07 3.48e-07 6e-07 5.39e-07 4.82e-07 8.47e-07 4.4e-07 3.6e-07 3.21e-07 2.73e-07 1.22e-06 6.16e-07 1.96e-07 2.47e-07 3.29e-07 3.7e-07 2.22e-07 2.91e-07