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Genes within 1Mb (chr1:46617642:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079277 MKNK1 799 sc-eQTL 4.67e-01 0.133 0.182 0.051 cDC L2
ENSG00000085998 POMGNT1 397337 sc-eQTL 3.08e-01 -0.205 0.201 0.051 cDC L2
ENSG00000086015 MAST2 830655 sc-eQTL 2.58e-01 -0.202 0.178 0.051 cDC L2
ENSG00000117480 FAAH 223325 sc-eQTL 8.90e-01 -0.0273 0.198 0.051 cDC L2
ENSG00000117481 NSUN4 277465 sc-eQTL 6.62e-01 0.09 0.206 0.051 cDC L2
ENSG00000123472 ATPAF1 -56225 sc-eQTL 6.44e-01 0.0929 0.201 0.051 cDC L2
ENSG00000123473 STIL -696505 sc-eQTL 4.01e-01 -0.146 0.174 0.051 cDC L2
ENSG00000132128 LRRC41 314034 sc-eQTL 4.25e-01 0.16 0.2 0.051 cDC L2
ENSG00000142961 MOB3C 751 sc-eQTL 9.24e-01 0.017 0.178 0.051 cDC L2
ENSG00000159592 GPBP1L1 929529 sc-eQTL 2.11e-01 0.253 0.202 0.051 cDC L2
ENSG00000159596 TMEM69 929461 sc-eQTL 5.32e-01 -0.128 0.204 0.051 cDC L2
ENSG00000159658 EFCAB14 -101472 sc-eQTL 8.88e-01 -0.0283 0.201 0.051 cDC L2
ENSG00000162366 PDZK1IP1 -573402 sc-eQTL 6.16e-01 -0.0845 0.168 0.051 cDC L2
ENSG00000162368 CMPK1 -716155 sc-eQTL 3.11e-01 0.192 0.189 0.051 cDC L2
ENSG00000173660 UQCRH 313944 sc-eQTL 1.49e-01 -0.183 0.126 0.051 cDC L2
ENSG00000197429 IPP 866989 sc-eQTL 5.44e-01 0.104 0.171 0.051 cDC L2
ENSG00000079277 MKNK1 799 sc-eQTL 8.59e-01 0.0371 0.209 0.051 pDC L2
ENSG00000085998 POMGNT1 397337 sc-eQTL 3.06e-01 -0.176 0.171 0.051 pDC L2
ENSG00000086015 MAST2 830655 sc-eQTL 6.35e-01 -0.0807 0.17 0.051 pDC L2
ENSG00000117480 FAAH 223325 sc-eQTL 2.29e-01 0.2 0.165 0.051 pDC L2
ENSG00000117481 NSUN4 277465 sc-eQTL 7.25e-02 -0.358 0.198 0.051 pDC L2
ENSG00000123472 ATPAF1 -56225 sc-eQTL 5.62e-01 -0.125 0.215 0.051 pDC L2
ENSG00000123473 STIL -696505 sc-eQTL 2.67e-01 0.196 0.176 0.051 pDC L2
ENSG00000132128 LRRC41 314034 sc-eQTL 9.23e-02 -0.356 0.21 0.051 pDC L2
ENSG00000142961 MOB3C 751 sc-eQTL 3.15e-01 -0.204 0.202 0.051 pDC L2
ENSG00000159592 GPBP1L1 929529 sc-eQTL 7.32e-01 0.0706 0.205 0.051 pDC L2
ENSG00000159596 TMEM69 929461 sc-eQTL 6.53e-01 0.0871 0.193 0.051 pDC L2
ENSG00000159658 EFCAB14 -101472 sc-eQTL 8.73e-02 0.31 0.18 0.051 pDC L2
ENSG00000162366 PDZK1IP1 -573402 sc-eQTL 1.99e-01 0.208 0.162 0.051 pDC L2
ENSG00000162368 CMPK1 -716155 sc-eQTL 1.33e-01 0.291 0.192 0.051 pDC L2
ENSG00000173660 UQCRH 313944 sc-eQTL 4.09e-01 0.135 0.163 0.051 pDC L2
ENSG00000197429 IPP 866989 sc-eQTL 6.00e-02 0.363 0.191 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079277 MKNK1 799 eQTL 9.54e-06 -0.118 0.0265 0.0 0.0 0.0564
ENSG00000086015 MAST2 830655 eQTL 0.000389 0.149 0.042 0.0 0.0 0.0564
ENSG00000117461 PIK3R3 484606 eQTL 0.00804 0.115 0.0432 0.0 0.0 0.0564
ENSG00000123472 ATPAF1 -56225 eQTL 2.68e-05 -0.174 0.0413 0.0 0.0 0.0564
ENSG00000142961 MOB3C 751 eQTL 3.98e-07 -0.204 0.0399 0.00104 0.0 0.0564
ENSG00000159588 CCDC17 993585 eQTL 0.024 0.0687 0.0304 0.0 0.0 0.0564
ENSG00000159592 GPBP1L1 929529 eQTL 0.00334 0.0672 0.0229 0.0 0.0 0.0564
ENSG00000159658 EFCAB14 -101472 eQTL 0.0147 -0.0998 0.0408 0.0 0.0 0.0564
ENSG00000173660 UQCRH 313944 eQTL 0.0299 -0.0459 0.0211 0.0 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000086015 MAST2 830655 2.74e-07 1.3e-07 3.72e-08 1.81e-07 9.01e-08 9.8e-08 1.49e-07 5.37e-08 1.44e-07 4.74e-08 1.57e-07 8.68e-08 1.41e-07 6.56e-08 5.99e-08 7.3e-08 3.98e-08 1.21e-07 5.36e-08 4e-08 1.04e-07 1.27e-07 1.39e-07 3.42e-08 1.4e-07 1.14e-07 1.06e-07 9.57e-08 1.08e-07 1.07e-07 9.7e-08 3.66e-08 3.35e-08 8.49e-08 8.38e-08 3.95e-08 4.99e-08 9.22e-08 6.55e-08 3.71e-08 4.64e-08 1.36e-07 4.33e-08 1.29e-08 5.43e-08 1.83e-08 1.22e-07 3.83e-09 4.79e-08
ENSG00000142961 MOB3C 751 9.54e-05 9.98e-05 2.66e-05 4.72e-05 2.69e-05 4.54e-05 0.000127 2.48e-05 0.000111 7.7e-05 0.000148 6.13e-05 0.000159 5.12e-05 2.71e-05 8.86e-05 5.88e-05 9.51e-05 3.11e-05 3.04e-05 6.56e-05 0.000123 0.000101 3.95e-05 0.000152 4.14e-05 6.57e-05 5.4e-05 0.000106 7.91e-05 7.42e-05 8.84e-06 1.41e-05 2.68e-05 3.54e-05 2.43e-05 1.63e-05 1.61e-05 2.1e-05 1.27e-05 1.04e-05 9.52e-05 1.41e-05 2.53e-06 1.28e-05 1.87e-05 1.76e-05 1.13e-05 7.99e-06
ENSG00000159658 EFCAB14 -101472 5.53e-06 7.76e-06 6.63e-07 3.69e-06 1.65e-06 1.71e-06 8.04e-06 1.24e-06 4.62e-06 3.05e-06 7.96e-06 2.93e-06 9.48e-06 2.19e-06 9.81e-07 3.9e-06 2.07e-06 3.81e-06 1.49e-06 1.55e-06 2.71e-06 6.12e-06 4.68e-06 1.94e-06 9.03e-06 2.14e-06 3.08e-06 1.73e-06 5.1e-06 5.51e-06 3.38e-06 4.15e-07 5.37e-07 2.16e-06 2.22e-06 1.35e-06 1.06e-06 5e-07 9e-07 6.22e-07 5.21e-07 8.42e-06 6.82e-07 1.59e-07 6.98e-07 1.14e-06 1.16e-06 6.58e-07 4.23e-07
ENSG00000230896 \N 920567 2.67e-07 1.25e-07 3.59e-08 1.8e-07 8.92e-08 9.65e-08 1.42e-07 5.19e-08 1.41e-07 4.57e-08 1.62e-07 8.36e-08 1.33e-07 6.38e-08 5.84e-08 7.17e-08 3.9e-08 1.14e-07 5.19e-08 4.07e-08 1.05e-07 1.26e-07 1.32e-07 4.05e-08 1.32e-07 1.16e-07 1.11e-07 9.32e-08 1.05e-07 1.11e-07 9.91e-08 3.87e-08 3.28e-08 8.65e-08 8.98e-08 3.76e-08 5.03e-08 9.65e-08 7.23e-08 3.37e-08 3.95e-08 1.35e-07 4.04e-08 1.86e-08 5.87e-08 1.67e-08 1.22e-07 3.95e-09 4.85e-08
ENSG00000237424 \N -816999 2.74e-07 1.27e-07 3.72e-08 1.81e-07 9.01e-08 9.76e-08 1.49e-07 5.4e-08 1.44e-07 4.74e-08 1.57e-07 8.68e-08 1.41e-07 6.56e-08 6.17e-08 7.3e-08 3.98e-08 1.21e-07 5.36e-08 4.04e-08 1.08e-07 1.27e-07 1.39e-07 3.49e-08 1.4e-07 1.14e-07 1.06e-07 9.65e-08 1.08e-07 1.07e-07 9.7e-08 3.68e-08 3.56e-08 8.68e-08 8.21e-08 3.6e-08 5.04e-08 9.22e-08 6.54e-08 3.76e-08 4.36e-08 1.33e-07 4.52e-08 1.23e-08 5.43e-08 1.83e-08 1.22e-07 3.83e-09 4.94e-08