Genes within 1Mb (chr1:46480077:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 988914 eQTL 3.41e-02 0.113 0.0532 0.0 0.0 0.0186
ENSG00000085998 POMGNT1 259772 eQTL 4.15e-02 0.0765 0.0375 0.0 0.0 0.0186
ENSG00000117481 NSUN4 139900 eQTL 7.30e-07 0.428 0.0858 0.0 0.0 0.0186
ENSG00000123473 STIL -834070 eQTL 4.29e-02 0.136 0.0671 0.00123 0.0 0.0186
ENSG00000159588 CCDC17 856020 eQTL 3.98e-02 -0.104 0.0506 0.0 0.0 0.0186
ENSG00000159658 EFCAB14 -239037 pQTL 8.92e-03 0.148 0.0563 0.00143 0.0 0.0202
ENSG00000234329 AL604028.2 828251 eQTL 1.24e-03 0.286 0.0882 0.0 0.0 0.0186


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117481 NSUN4 139900 4.6e-06 4.79e-06 5.35e-07 2.96e-06 1.53e-06 1.6e-06 2.41e-06 3.77e-07 1.92e-06 1.41e-06 2.56e-06 2.39e-06 4.6e-06 2.15e-06 1.35e-06 1.17e-06 1.92e-06 2.13e-06 5.56e-07 1.16e-06 1.11e-06 2.57e-06 2.16e-06 1.8e-06 4.81e-06 1.21e-06 1.14e-06 1.79e-06 3.52e-06 2.53e-06 1.86e-06 2.82e-07 3.72e-07 1.64e-06 1.94e-06 9.44e-07 8.32e-07 3.84e-07 5.09e-07 2.79e-07 1.18e-07 3.84e-06 6.74e-07 1.3e-07 3.04e-07 4.13e-07 3.8e-07 6.08e-08 1.92e-07
ENSG00000123473 STIL -834070 2.66e-07 1.08e-07 3.41e-08 1.7e-07 1.03e-07 9.13e-08 1.39e-07 5.29e-08 1.32e-07 3.99e-08 1.63e-07 7.58e-08 1.2e-07 6.07e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8e-08 9.27e-08 4.23e-08 4.01e-08 8.48e-08 8.39e-08 3.96e-08 2.6e-08 1.4e-07 4.51e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000159588 CCDC17 856020 2.6e-07 1.08e-07 3.41e-08 1.7e-07 1.03e-07 9.05e-08 1.39e-07 5.29e-08 1.32e-07 3.99e-08 1.61e-07 7.6e-08 1.2e-07 6.07e-08 4.77e-08 7.4e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8e-08 9.41e-08 4.23e-08 4.01e-08 8.48e-08 8.39e-08 3.96e-08 2.71e-08 1.42e-07 4.51e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000225447 \N 833880 2.66e-07 1.08e-07 3.41e-08 1.7e-07 1.03e-07 9.13e-08 1.39e-07 5.29e-08 1.32e-07 3.99e-08 1.63e-07 7.58e-08 1.2e-07 6.07e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8e-08 9.27e-08 4.23e-08 4.01e-08 8.48e-08 8.39e-08 3.96e-08 2.6e-08 1.4e-07 4.51e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000234329 AL604028.2 828251 2.66e-07 1.08e-07 3.41e-08 1.7e-07 1.03e-07 9.13e-08 1.39e-07 5.29e-08 1.36e-07 3.99e-08 1.63e-07 7.58e-08 1.2e-07 6.07e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.88e-08 1.03e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.11e-07 8.49e-08 1.05e-07 1.09e-07 9.5e-08 3.29e-08 2.6e-08 8e-08 9.27e-08 4.23e-08 4.01e-08 8.48e-08 8.39e-08 3.96e-08 2.6e-08 1.4e-07 4.51e-08 0.0 1.15e-07 1.83e-08 1.5e-07 4.96e-09 4.72e-08