Genes within 1Mb (chr1:46198577:A:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 707414 eQTL 6.96e-03 -0.0422 0.0156 0.0 0.0 0.329
ENSG00000085998 POMGNT1 -21728 eQTL 1.36e-13 -0.0806 0.0107 0.991 0.987 0.329
ENSG00000085999 RAD54L -49111 eQTL 1.28e-02 0.0515 0.0206 0.0 0.0 0.329
ENSG00000086015 MAST2 411590 eQTL 1.27e-02 0.0515 0.0206 0.0 0.0 0.329
ENSG00000117450 PRDX1 675530 eQTL 2.19e-02 -0.0278 0.0121 0.0 0.0 0.329
ENSG00000117461 PIK3R3 65541 eQTL 7.32e-01 0.00726 0.0212 0.00383 0.0 0.329
ENSG00000117480 FAAH -195740 eQTL 3.23e-02 0.0477 0.0222 0.0 0.0 0.329
ENSG00000117481 NSUN4 -141600 eQTL 9.93e-05 -0.0991 0.0254 0.0 0.0 0.329
ENSG00000132128 LRRC41 -105031 eQTL 4.56e-02 -0.0359 0.018 0.0 0.0 0.329
ENSG00000132781 MUTYH 858107 eQTL 2.03e-02 0.0321 0.0138 0.0 0.0 0.329
ENSG00000159588 CCDC17 574520 eQTL 7.48e-03 0.0398 0.0149 0.0 0.0 0.329
ENSG00000197429 IPP 447927 eQTL 2.11e-02 0.0491 0.0213 0.0 0.0 0.329
ENSG00000224805 LINC00853 -980673 eQTL 4.11e-02 -0.043 0.021 0.0 0.0 0.329
ENSG00000225447 RPS15AP10 552380 eQTL 3.28e-02 -0.0749 0.035 0.0 0.0 0.329
ENSG00000232022 FAAHP1 -233552 eQTL 1.14e-02 -0.0794 0.0313 0.0 0.0 0.329
ENSG00000234329 AL604028.2 546751 eQTL 1.58e-02 -0.0629 0.026 0.0 0.0 0.329


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000085998 POMGNT1 -21728 0.000115 8.73e-05 1.65e-05 2.7e-05 1.3e-05 3.19e-05 8.88e-05 1.37e-05 7.46e-05 3.89e-05 9.79e-05 4.21e-05 0.000115 3.43e-05 1.51e-05 5.82e-05 4.34e-05 5.36e-05 1.75e-05 1.8e-05 3.58e-05 9.27e-05 5.7e-05 2.38e-05 9.17e-05 2.67e-05 4.13e-05 3.62e-05 7.13e-05 4.34e-05 4.5e-05 4.13e-06 6.08e-06 1.28e-05 2.33e-05 1.23e-05 5.19e-06 7.38e-06 9.99e-06 5.87e-06 2.65e-06 8.86e-05 7.47e-06 1.11e-06 6.96e-06 1.04e-05 1.04e-05 4.93e-06 3.01e-06
ENSG00000085999 RAD54L -49111 7.19e-05 5.32e-05 1.4e-05 1.62e-05 7.16e-06 1.63e-05 4.97e-05 6.11e-06 3.94e-05 1.95e-05 4.93e-05 2.37e-05 5.78e-05 1.77e-05 1.03e-05 2.63e-05 3.34e-05 2.97e-05 1.04e-05 9.02e-06 2.2e-05 4.67e-05 3.15e-05 1.34e-05 5.75e-05 1.37e-05 2.27e-05 1.61e-05 3.86e-05 2.81e-05 2.17e-05 2.45e-06 2.56e-06 8.5e-06 1.69e-05 7.79e-06 3.52e-06 4.16e-06 6.12e-06 3.69e-06 1.82e-06 5.17e-05 5.16e-06 1.12e-06 5.18e-06 5.4e-06 5.47e-06 2.78e-06 1.53e-06
ENSG00000117481 NSUN4 -141600 1.04e-05 1.18e-05 2.95e-06 8.01e-06 2.57e-06 5.49e-06 1.17e-05 2.14e-06 1.05e-05 4.99e-06 1.05e-05 4.84e-06 1.71e-05 3.79e-06 2.28e-06 6.45e-06 6.86e-06 7.78e-06 2.65e-06 2.82e-06 6.67e-06 1.01e-05 8.25e-06 3.52e-06 1.42e-05 4.45e-06 7.15e-06 4.75e-06 1.15e-05 7.86e-06 5.54e-06 9.94e-07 1.1e-06 3.61e-06 5.63e-06 2.77e-06 1.83e-06 2.2e-06 1.76e-06 1.3e-06 1.02e-06 1.51e-05 1.52e-06 1.5e-07 7.18e-07 2.87e-06 1.06e-06 8.03e-07 4.62e-07
ENSG00000132763 \N 698277 2.64e-07 1.11e-07 4.47e-08 1.82e-07 9.01e-08 9.48e-08 1.61e-07 5.33e-08 1.45e-07 4.38e-08 1.62e-07 7.78e-08 1.52e-07 6.56e-08 5.14e-08 7.17e-08 3.9e-08 1.33e-07 5.75e-08 4.07e-08 1.22e-07 1.27e-07 1.34e-07 4.54e-08 1.37e-07 1.21e-07 1.07e-07 9.15e-08 1.09e-07 1.07e-07 9.64e-08 4.22e-08 2.74e-08 9.3e-08 8.93e-08 3.96e-08 5.01e-08 9.26e-08 6.78e-08 3.03e-08 3.35e-08 1.31e-07 4.52e-08 1.43e-08 1.01e-07 1.99e-08 1.26e-07 4.6e-09 4.74e-08
ENSG00000159588 CCDC17 574520 2.77e-07 1.36e-07 6.57e-08 2.15e-07 9.82e-08 1.25e-07 2.74e-07 5.66e-08 1.98e-07 5.42e-08 1.63e-07 1.11e-07 3.04e-07 8.07e-08 6.17e-08 7.89e-08 4.18e-08 2.43e-07 7.42e-08 5.33e-08 1.34e-07 1.81e-07 1.62e-07 2.93e-08 1.98e-07 1.65e-07 1.29e-07 1.01e-07 1.37e-07 1.17e-07 1.14e-07 3.93e-08 3.56e-08 1.21e-07 4.92e-08 3.05e-08 4.28e-08 7.25e-08 6.5e-08 4.19e-08 3.91e-08 1.46e-07 3.35e-08 2.1e-08 8.16e-08 9.65e-09 1.21e-07 4.09e-09 4.79e-08
ENSG00000232022 FAAHP1 -233552 4.01e-06 3.85e-06 6.63e-07 2.61e-06 9.11e-07 1.6e-06 4.08e-06 1.03e-06 4.92e-06 1.09e-06 2.88e-06 1.71e-06 7.38e-06 1.35e-06 9.26e-07 2.34e-06 1.81e-06 3.09e-06 1.44e-06 9.73e-07 2.9e-06 4.2e-06 3.47e-06 1.54e-06 4.53e-06 1.38e-06 2.51e-06 1.46e-06 4.18e-06 2.94e-06 2.01e-06 5.08e-07 5.88e-07 1.52e-06 1.91e-06 8.84e-07 9.25e-07 4.57e-07 1.23e-06 4.08e-07 3.5e-07 4.63e-06 3.99e-07 1.32e-07 2.8e-07 1.42e-06 4.86e-07 2.22e-07 1.58e-07