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Genes within 1Mb (chr1:46179853:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000070759 TESK2 688690 sc-eQTL 3.11e-01 0.217 0.214 0.052 gdT L2
ENSG00000079277 MKNK1 -436990 sc-eQTL 3.79e-01 0.204 0.231 0.052 gdT L2
ENSG00000085998 POMGNT1 -40452 sc-eQTL 9.74e-01 0.00735 0.222 0.052 gdT L2
ENSG00000085999 RAD54L -66608 sc-eQTL 3.76e-01 -0.137 0.154 0.052 gdT L2
ENSG00000086015 MAST2 392866 sc-eQTL 5.44e-01 -0.127 0.208 0.052 gdT L2
ENSG00000117448 AKR1A1 629310 sc-eQTL 6.63e-01 0.0937 0.214 0.052 gdT L2
ENSG00000117450 PRDX1 656806 sc-eQTL 8.11e-01 0.0479 0.2 0.052 gdT L2
ENSG00000117461 PIK3R3 46817 sc-eQTL 9.71e-01 0.00724 0.201 0.052 gdT L2
ENSG00000117481 NSUN4 -160324 sc-eQTL 1.21e-02 -0.571 0.225 0.052 gdT L2
ENSG00000123472 ATPAF1 -494014 sc-eQTL 7.34e-01 -0.0686 0.202 0.052 gdT L2
ENSG00000132128 LRRC41 -123755 sc-eQTL 5.91e-01 0.12 0.223 0.052 gdT L2
ENSG00000132773 TOE1 839801 sc-eQTL 7.69e-01 0.0617 0.21 0.052 gdT L2
ENSG00000132780 NASP 596007 sc-eQTL 9.30e-01 -0.0187 0.213 0.052 gdT L2
ENSG00000132781 MUTYH 838960 sc-eQTL 9.77e-01 0.00639 0.223 0.052 gdT L2
ENSG00000142961 MOB3C -437038 sc-eQTL 1.48e-01 -0.308 0.211 0.052 gdT L2
ENSG00000159592 GPBP1L1 491740 sc-eQTL 2.82e-01 -0.251 0.233 0.052 gdT L2
ENSG00000159596 TMEM69 491672 sc-eQTL 8.02e-01 -0.0523 0.208 0.052 gdT L2
ENSG00000159658 EFCAB14 -539261 sc-eQTL 5.35e-01 0.122 0.196 0.052 gdT L2
ENSG00000162415 ZSWIM5 873644 sc-eQTL 6.44e-01 -0.0946 0.204 0.052 gdT L2
ENSG00000173660 UQCRH -123845 sc-eQTL 8.34e-01 0.0424 0.202 0.052 gdT L2
ENSG00000186603 HPDL 852958 sc-eQTL 2.06e-01 -0.226 0.178 0.052 gdT L2
ENSG00000197429 IPP 429200 sc-eQTL 8.42e-01 0.0458 0.229 0.052 gdT L2
ENSG00000280670 CCDC163 679774 sc-eQTL 2.90e-03 0.607 0.2 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079277 MKNK1 -436990 eQTL 0.00801 -0.0812 0.0306 0.0 0.0 0.0407
ENSG00000086015 MAST2 392866 eQTL 0.0404 -0.099 0.0482 0.0 0.0 0.0407
ENSG00000117450 PRDX1 656806 eQTL 0.00187 0.0879 0.0282 0.0 0.0 0.0407
ENSG00000132763 MMACHC 679553 eQTL 0.000575 0.257 0.0745 0.0 0.0 0.0407
ENSG00000132781 MUTYH 839383 eQTL 0.0176 -0.0766 0.0322 0.0 0.0 0.0407
ENSG00000159596 TMEM69 491672 eQTL 0.00166 -0.169 0.0536 0.0 0.0 0.0407
ENSG00000234329 AL604028.2 528027 eQTL 0.00129 0.196 0.0606 0.0 0.0 0.0407
ENSG00000280670 CCDC163 679774 eQTL 6.2299999999999996e-46 1.23 0.0819 0.0 0.0 0.0407

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000086015 MAST2 392866 1.58e-06 1.01e-06 2.88e-07 1.15e-06 1.04e-07 6.56e-07 1.26e-06 2.62e-07 1.14e-06 2.67e-07 1.19e-06 5.76e-07 2.5e-06 3e-07 4.4e-07 4.96e-07 9.14e-07 7.21e-07 3.56e-07 1.15e-06 4.43e-07 1.11e-06 8.53e-07 3.32e-07 1.71e-06 3.66e-07 6.81e-07 8.64e-07 1.31e-06 9.58e-07 5.48e-07 2.42e-07 5.52e-07 1.12e-06 5.23e-07 3.16e-07 8.38e-07 3.16e-07 3.74e-07 3.46e-07 3.17e-07 1.49e-06 3.48e-07 1.21e-08 9.64e-08 2.14e-07 2.15e-07 5.66e-08 1.47e-07
ENSG00000142961 \N -437038 1.28e-06 9.3e-07 3.12e-07 6.42e-07 9.16e-08 6.02e-07 9.92e-07 2.06e-07 8.66e-07 3.04e-07 1.07e-06 5.48e-07 2.1e-06 2.55e-07 4.17e-07 3.35e-07 8.26e-07 5.88e-07 3.26e-07 7.4e-07 2.93e-07 7.06e-07 7.78e-07 2.24e-07 1.39e-06 2.54e-07 5.49e-07 7.81e-07 1.04e-06 8.56e-07 4.48e-07 2.98e-07 3.97e-07 6.11e-07 4.63e-07 2.42e-07 8.33e-07 2.21e-07 2.19e-07 3.75e-07 1.85e-07 1.43e-06 1.24e-07 5.61e-09 6.59e-08 1.24e-07 2.45e-07 2.35e-08 8.44e-08
ENSG00000280670 CCDC163 679774 8.48e-07 3.11e-07 1.03e-07 2.87e-07 1.05e-07 2.67e-07 4.05e-07 6.75e-08 2.04e-07 1.11e-07 2.18e-07 1.57e-07 7.02e-07 1.01e-07 9.33e-08 9.11e-08 1.38e-07 3.58e-07 8.68e-08 2.68e-07 1.52e-07 2.3e-07 2.67e-07 3.59e-08 2.99e-07 2.13e-07 1.57e-07 2.44e-07 2.78e-07 2.02e-07 1.59e-07 5.71e-08 4.83e-08 2.35e-07 2.32e-07 4.86e-08 4.77e-07 7.75e-08 5.89e-08 1.16e-07 3.6e-08 3.27e-07 2.47e-08 2.06e-08 3.83e-08 1.95e-08 9.46e-08 2.23e-09 5.16e-08