Genes within 1Mb (chr1:46169537:A:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 678374 eQTL 4.28e-05 0.0606 0.0147 0.0 0.0 0.419
ENSG00000085998 POMGNT1 -50768 eQTL 3.28e-08 0.0574 0.0103 0.0 0.0 0.419
ENSG00000086015 MAST2 382550 eQTL 7.10e-04 -0.0662 0.0195 0.0 0.0 0.419
ENSG00000117448 AKR1A1 618994 eQTL 4.94e-02 0.022 0.0112 0.0 0.0 0.419
ENSG00000117461 PIK3R3 36501 eQTL 8.05e-07 -0.0986 0.0199 0.0 0.0 0.419
ENSG00000117481 NSUN4 -170640 eQTL 1.37e-04 0.0921 0.024 0.0 0.0 0.419
ENSG00000132128 LRRC41 -134071 eQTL 4.56e-02 0.0341 0.017 0.0 0.0 0.419
ENSG00000132763 MMACHC 669237 eQTL 2.42e-02 -0.0685 0.0303 0.0 0.0 0.419
ENSG00000159588 CCDC17 545480 eQTL 1.69e-06 -0.0673 0.014 0.0 0.0 0.419
ENSG00000159658 EFCAB14 -549577 pQTL 3.74e-02 0.0335 0.0161 0.0 0.0 0.418
ENSG00000197429 IPP 418887 eQTL 7.15e-05 -0.08 0.0201 0.00673 0.00642 0.419
ENSG00000225447 RPS15AP10 523340 eQTL 1.72e-05 0.142 0.033 0.0 0.0 0.419
ENSG00000234329 AL604028.2 517711 eQTL 1.63e-08 0.138 0.0243 0.0 0.0 0.419
ENSG00000280670 CCDC163 669458 eQTL 3.36e-02 -0.0785 0.0369 0.0 0.0 0.419


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 678374 2.8e-07 1.56e-07 6.57e-08 2.48e-07 9.82e-08 8.89e-08 1.9e-07 5.62e-08 1.54e-07 6.75e-08 1.63e-07 1.11e-07 1.87e-07 8.07e-08 5.94e-08 7.74e-08 4.24e-08 1.56e-07 7.09e-08 5.07e-08 1.25e-07 1.26e-07 1.58e-07 3.58e-08 2.02e-07 1.23e-07 1.12e-07 1.04e-07 1.26e-07 1.24e-07 1.14e-07 3.93e-08 4.02e-08 9.5e-08 5.5e-08 2.74e-08 4.54e-08 5.71e-08 6.21e-08 6.07e-08 5.45e-08 1.6e-07 5.39e-08 1.95e-08 3.83e-08 1.19e-08 1.2e-07 2.2e-09 4.98e-08
ENSG00000085998 POMGNT1 -50768 8.84e-06 1.22e-05 2.05e-06 6.97e-06 2.39e-06 5e-06 1.19e-05 2.18e-06 1.05e-05 5.52e-06 1.49e-05 6.24e-06 1.82e-05 3.86e-06 3.14e-06 6.57e-06 4.99e-06 8.19e-06 2.89e-06 2.8e-06 5.79e-06 1.03e-05 9.61e-06 3.4e-06 1.83e-05 3.88e-06 5.26e-06 4.68e-06 1.2e-05 1.03e-05 7.4e-06 1.06e-06 1.25e-06 3.43e-06 5.11e-06 2.8e-06 1.76e-06 1.92e-06 2.19e-06 1.2e-06 1.01e-06 1.45e-05 1.29e-06 2.27e-07 7.53e-07 1.71e-06 1.75e-06 8.24e-07 4.42e-07
ENSG00000117461 PIK3R3 36501 1.12e-05 1.46e-05 2.53e-06 8.67e-06 2.42e-06 6.12e-06 1.78e-05 2.44e-06 1.41e-05 7.23e-06 1.88e-05 7.07e-06 2.46e-05 4.99e-06 4.15e-06 8.18e-06 7.11e-06 1.17e-05 3.56e-06 3.49e-06 6.51e-06 1.27e-05 1.31e-05 4.52e-06 2.42e-05 4.73e-06 7.19e-06 5.39e-06 1.49e-05 1.36e-05 1.01e-05 1.06e-06 1.24e-06 3.8e-06 6.33e-06 3.47e-06 1.78e-06 2.18e-06 2.22e-06 1.74e-06 1.05e-06 1.8e-05 1.57e-06 2.66e-07 9.48e-07 2.08e-06 2.1e-06 8.11e-07 9.21e-07
ENSG00000117481 NSUN4 -170640 2.69e-06 3.77e-06 5.8e-07 2.42e-06 6.17e-07 8.1e-07 2.49e-06 8.31e-07 2.35e-06 1.41e-06 3.41e-06 1.67e-06 4.48e-06 1.28e-06 8.95e-07 1.62e-06 1.34e-06 2.15e-06 1.38e-06 1.37e-06 1.19e-06 3.09e-06 2.71e-06 1.66e-06 4.62e-06 1.16e-06 1.42e-06 1.81e-06 2.77e-06 2.86e-06 2.01e-06 3.27e-07 5.52e-07 1.51e-06 1.75e-06 8.95e-07 9.23e-07 4.68e-07 1.24e-06 3.81e-07 1.83e-07 4.29e-06 4.93e-07 1.66e-07 3.98e-07 3.65e-07 6.27e-07 2.62e-07 1.77e-07
ENSG00000132128 LRRC41 -134071 4.27e-06 5.07e-06 8.56e-07 3.21e-06 1.12e-06 1.59e-06 4.17e-06 9.77e-07 4.92e-06 2.42e-06 5.32e-06 3.5e-06 7.5e-06 2.34e-06 1.39e-06 2.66e-06 2.06e-06 2.9e-06 1.27e-06 1.01e-06 2.12e-06 4.23e-06 3.51e-06 1.4e-06 6.44e-06 1.35e-06 2.25e-06 1.79e-06 4.3e-06 4.12e-06 2.73e-06 6.26e-07 7.33e-07 1.6e-06 2.13e-06 9.01e-07 9.59e-07 4.24e-07 9.31e-07 5.02e-07 2.79e-07 5.69e-06 4.43e-07 1.54e-07 3.45e-07 3.93e-07 7.1e-07 4.11e-07 3.58e-07
ENSG00000132763 MMACHC 669237 2.77e-07 1.59e-07 6.45e-08 2.53e-07 9.94e-08 8.75e-08 1.99e-07 5.62e-08 1.54e-07 7.6e-08 1.61e-07 1.15e-07 1.95e-07 8.07e-08 5.69e-08 7.74e-08 4.18e-08 1.56e-07 7.09e-08 5.2e-08 1.27e-07 1.31e-07 1.58e-07 3.42e-08 2.09e-07 1.26e-07 1.17e-07 1.04e-07 1.31e-07 1.29e-07 1.21e-07 3.99e-08 3.73e-08 9.72e-08 6.35e-08 3.05e-08 4.62e-08 5.8e-08 6.33e-08 6.31e-08 4.69e-08 1.59e-07 5.22e-08 2.62e-08 3.42e-08 1.01e-08 1.21e-07 2.23e-09 4.83e-08
ENSG00000159588 CCDC17 545480 3.53e-07 2.89e-07 8.67e-08 3.87e-07 1.07e-07 1.5e-07 3.25e-07 7.56e-08 2.12e-07 1.21e-07 2.84e-07 1.57e-07 3.4e-07 9.15e-08 7.98e-08 1.01e-07 5.73e-08 2.43e-07 8.93e-08 8.52e-08 1.33e-07 1.98e-07 1.86e-07 6.52e-08 3.7e-07 1.76e-07 1.31e-07 1.48e-07 1.48e-07 2.52e-07 1.78e-07 4.71e-08 3.74e-08 1.21e-07 2.32e-07 5.23e-08 7.86e-08 7.75e-08 5.4e-08 7.67e-08 6e-08 2.8e-07 3.59e-08 7.3e-08 3.87e-08 8.42e-09 7.97e-08 3.04e-09 5.49e-08
ENSG00000159658 EFCAB14 -549577 3.53e-07 2.89e-07 8.51e-08 3.77e-07 1.07e-07 1.44e-07 3.25e-07 7.12e-08 2.12e-07 1.21e-07 2.84e-07 1.57e-07 3.4e-07 9.15e-08 7.79e-08 9.35e-08 5.57e-08 2.33e-07 8.68e-08 8e-08 1.33e-07 1.9e-07 1.86e-07 5.6e-08 3.55e-07 1.71e-07 1.33e-07 1.46e-07 1.44e-07 2.39e-07 1.76e-07 4.29e-08 3.74e-08 1.27e-07 2.15e-07 5.14e-08 7.74e-08 7.64e-08 5.7e-08 7.55e-08 5.94e-08 2.74e-07 3.53e-08 6.55e-08 3.87e-08 8.24e-09 7.83e-08 2.99e-09 5.49e-08
ENSG00000234329 AL604028.2 517711 3.77e-07 3.35e-07 1.05e-07 4.31e-07 1.07e-07 1.57e-07 3.57e-07 8.11e-08 2.56e-07 1.46e-07 3.47e-07 1.91e-07 4.05e-07 1.01e-07 9.33e-08 1.13e-07 7.3e-08 2.75e-07 9.97e-08 7.49e-08 1.35e-07 2.07e-07 2.11e-07 9.63e-08 4.46e-07 1.9e-07 1.57e-07 1.68e-07 1.6e-07 3.3e-07 1.93e-07 5.22e-08 4.27e-08 1.23e-07 2.82e-07 6.23e-08 9.9e-08 9.71e-08 5.62e-08 5.88e-08 5.1e-08 3.43e-07 3.26e-08 8.96e-08 3.66e-08 9.31e-09 7.13e-08 3.35e-09 5.54e-08