Genes within 1Mb (chr1:46157425:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 666262 eQTL 3.05e-07 0.0761 0.0147 0.0 0.0 0.49
ENSG00000085998 POMGNT1 -62880 eQTL 9.62e-06 0.0464 0.0104 0.0 0.0 0.49
ENSG00000086015 MAST2 370438 eQTL 8.36e-06 -0.0875 0.0195 0.0 0.0 0.49
ENSG00000117448 AKR1A1 606882 eQTL 1.76e-02 0.0268 0.0113 0.0 0.0 0.49
ENSG00000117450 PRDX1 634378 eQTL 6.46e-03 0.0314 0.0115 0.00212 0.00185 0.49
ENSG00000117461 PIK3R3 24389 eQTL 2.81e-07 -0.103 0.02 0.0 0.0 0.49
ENSG00000117481 NSUN4 -182752 eQTL 5.68e-03 0.0673 0.0243 0.0 0.0 0.49
ENSG00000132128 LRRC41 -146183 eQTL 2.21e-02 0.0392 0.0171 0.00111 0.0 0.49
ENSG00000142961 MOB3C -459466 eQTL 2.49e-02 0.0423 0.0188 0.0 0.0 0.49
ENSG00000159588 CCDC17 533368 eQTL 9.12e-07 -0.0694 0.014 0.0 0.0 0.49
ENSG00000159592 GPBP1L1 469312 eQTL 6.10e-03 -0.0293 0.0107 0.0 0.0 0.49
ENSG00000159596 TMEM69 469244 eQTL 2.28e-02 -0.05 0.0219 0.0 0.0 0.49
ENSG00000159658 EFCAB14 -561689 pQTL 5.79e-03 0.0444 0.0161 0.00121 0.0 0.485
ENSG00000159658 EFCAB14 -561689 eQTL 4.56e-02 0.0382 0.0191 0.0 0.0 0.49
ENSG00000197429 IPP 406775 eQTL 1.91e-05 -0.0866 0.0202 0.0249 0.0218 0.49
ENSG00000225447 RPS15AP10 511228 eQTL 1.01e-05 0.147 0.0331 0.0 0.0 0.49
ENSG00000234329 AL604028.2 505599 eQTL 4.39e-12 0.17 0.0243 0.0 0.0 0.49
ENSG00000280670 CCDC163 657346 eQTL 7.62e-05 0.147 0.0369 0.0 0.0 0.49


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 666262 2.77e-07 1.33e-07 4.91e-08 2.01e-07 9.16e-08 9.48e-08 1.67e-07 5.4e-08 1.45e-07 5.42e-08 1.57e-07 1.01e-07 1.69e-07 7.64e-08 6.18e-08 7.5e-08 4.12e-08 1.33e-07 6.32e-08 4.3e-08 1.21e-07 1.24e-07 1.5e-07 2.79e-08 1.72e-07 1.14e-07 1.07e-07 9.74e-08 1.23e-07 1.05e-07 1.02e-07 3.06e-08 3.51e-08 8.56e-08 3.63e-08 3.28e-08 5.3e-08 8.63e-08 6.71e-08 4.55e-08 4.94e-08 1.48e-07 5.22e-08 2.09e-08 4.92e-08 1.86e-08 1.21e-07 1.89e-09 5.02e-08
ENSG00000085998 POMGNT1 -62880 6.15e-06 9.1e-06 7.72e-07 4.01e-06 1.69e-06 2.59e-06 9.53e-06 1.24e-06 5.38e-06 3.49e-06 9.93e-06 4.15e-06 1.14e-05 3.58e-06 1.3e-06 4.66e-06 3.71e-06 3.95e-06 2.19e-06 1.8e-06 3.16e-06 7.4e-06 6.46e-06 2.3e-06 1.26e-05 2.08e-06 3.41e-06 2.11e-06 7.04e-06 7.87e-06 4.06e-06 4.82e-07 7.8e-07 2.77e-06 2.59e-06 1.83e-06 1.14e-06 8.97e-07 1.32e-06 8.28e-07 7.73e-07 9.28e-06 6.3e-07 1.88e-07 7.89e-07 8.66e-07 8.75e-07 6.92e-07 5.81e-07
ENSG00000086015 MAST2 370438 8.85e-07 6.76e-07 1.05e-07 4.26e-07 1.08e-07 2.16e-07 5.82e-07 9.78e-08 4.18e-07 2.12e-07 7.15e-07 3.62e-07 9.23e-07 1.6e-07 2.15e-07 2.1e-07 3.52e-07 3.82e-07 2.25e-07 1.51e-07 1.87e-07 3.76e-07 3.87e-07 1.76e-07 1.14e-06 2.36e-07 2.52e-07 2.57e-07 4.06e-07 7.39e-07 2.93e-07 7.79e-08 5.31e-08 1.5e-07 3.35e-07 8.32e-08 1.09e-07 7.53e-08 5.93e-08 2.59e-08 7.16e-08 6.81e-07 1.65e-08 5.68e-08 8.45e-08 1.95e-08 1.03e-07 1.24e-08 5.54e-08
ENSG00000117461 PIK3R3 24389 1.39e-05 1.55e-05 2.67e-06 9.42e-06 2.6e-06 6.44e-06 2.09e-05 2.46e-06 1.55e-05 7.65e-06 2.08e-05 7.98e-06 2.76e-05 6.24e-06 4.76e-06 9.24e-06 8.33e-06 1.33e-05 4.18e-06 4.08e-06 7.68e-06 1.42e-05 1.64e-05 5.06e-06 2.73e-05 4.96e-06 7.58e-06 6.54e-06 1.72e-05 1.64e-05 1.04e-05 1.12e-06 1.49e-06 4.39e-06 6.5e-06 3.79e-06 1.76e-06 2.41e-06 2.95e-06 2e-06 1.29e-06 2.02e-05 2.14e-06 2.86e-07 1.13e-06 2.45e-06 2.9e-06 9.75e-07 8.17e-07
ENSG00000117481 NSUN4 -182752 1.65e-06 2.46e-06 2.91e-07 1.37e-06 3.73e-07 6.41e-07 1.29e-06 4.01e-07 1.72e-06 6.98e-07 1.83e-06 1.28e-06 3.07e-06 8.5e-07 3.86e-07 9.61e-07 1.1e-06 1.27e-06 5.46e-07 5.44e-07 7.74e-07 1.95e-06 1.77e-06 8.48e-07 3.04e-06 7.45e-07 9.78e-07 9.36e-07 1.62e-06 1.66e-06 7.63e-07 2.86e-07 3.49e-07 7.27e-07 8.94e-07 6.24e-07 7.24e-07 3.58e-07 5.01e-07 2.08e-07 3.04e-07 2.89e-06 1.28e-07 1.6e-07 2.16e-07 2.47e-07 3.34e-07 1.45e-07 1.98e-07
ENSG00000132128 LRRC41 -146183 2.7e-06 3.13e-06 2.7e-07 2.06e-06 4.78e-07 8.09e-07 2.16e-06 5.96e-07 1.95e-06 8.55e-07 2.61e-06 1.46e-06 3.96e-06 1.43e-06 8.27e-07 1.54e-06 1.41e-06 2.26e-06 1.08e-06 1.15e-06 9.18e-07 2.95e-06 2.71e-06 1.01e-06 4.41e-06 1.22e-06 1.27e-06 1.44e-06 2.57e-06 2.91e-06 1.89e-06 2.48e-07 6.43e-07 1.22e-06 1.43e-06 8.92e-07 8.1e-07 4.38e-07 1.09e-06 3.75e-07 3.05e-07 4.03e-06 4.26e-07 1.81e-07 3.76e-07 3.13e-07 7.4e-07 2.23e-07 2.46e-07
ENSG00000132763 \N 657125 2.77e-07 1.42e-07 5.14e-08 2.05e-07 9.16e-08 9.05e-08 1.67e-07 5.4e-08 1.45e-07 5.42e-08 1.57e-07 1.01e-07 1.71e-07 7.64e-08 6.18e-08 7.5e-08 4.12e-08 1.4e-07 6.75e-08 4.78e-08 1.22e-07 1.24e-07 1.58e-07 2.87e-08 1.72e-07 1.21e-07 1.07e-07 9.74e-08 1.22e-07 1.07e-07 1.06e-07 3.08e-08 3.59e-08 8.72e-08 3.46e-08 3.14e-08 5.61e-08 8.71e-08 6.57e-08 4.19e-08 5e-08 1.48e-07 5.21e-08 1.71e-08 4.92e-08 1.86e-08 1.21e-07 1.89e-09 5.02e-08
ENSG00000142961 MOB3C -459466 5.37e-07 3.23e-07 6.57e-08 2.66e-07 1.07e-07 1.26e-07 3.57e-07 6.2e-08 2.12e-07 1.15e-07 2.84e-07 1.91e-07 4.34e-07 9.15e-08 9.2e-08 1.14e-07 8.74e-08 2.66e-07 9.69e-08 8.31e-08 1.34e-07 2.15e-07 2.48e-07 6.52e-08 4.67e-07 1.65e-07 1.31e-07 1.52e-07 1.87e-07 3.3e-07 1.71e-07 4.78e-08 5.17e-08 1.15e-07 1.39e-07 5.14e-08 6.39e-08 5.92e-08 4.82e-08 8.03e-08 4.68e-08 3.06e-07 3.08e-08 1.26e-08 3.3e-08 1.03e-08 8.94e-08 0.0 4.61e-08
ENSG00000159588 CCDC17 533368 3.53e-07 1.92e-07 6.26e-08 2.35e-07 1.03e-07 7.75e-08 2.5e-07 5.62e-08 1.75e-07 8.53e-08 1.83e-07 1.37e-07 2.74e-07 8.55e-08 5.97e-08 9.11e-08 5.27e-08 1.8e-07 7.42e-08 6.16e-08 1.18e-07 1.65e-07 1.73e-07 4.27e-08 2.86e-07 1.31e-07 1.2e-07 1.17e-07 1.37e-07 1.8e-07 1.26e-07 3.9e-08 4.16e-08 9.5e-08 5.41e-08 3.18e-08 4.54e-08 8.17e-08 6.33e-08 6.31e-08 6e-08 2e-07 4.87e-08 1.62e-08 2.82e-08 1.01e-08 7.61e-08 2.16e-09 4.91e-08
ENSG00000159596 TMEM69 469244 5.14e-07 3.12e-07 6.57e-08 2.61e-07 1.05e-07 1.25e-07 3.42e-07 5.84e-08 2.04e-07 1.11e-07 2.62e-07 1.86e-07 4.11e-07 8.85e-08 7.98e-08 1.14e-07 8.64e-08 2.56e-07 9.19e-08 8.69e-08 1.39e-07 2.09e-07 2.26e-07 5.11e-08 4.46e-07 1.56e-07 1.33e-07 1.46e-07 1.76e-07 2.89e-07 1.59e-07 4.58e-08 4.96e-08 1.01e-07 1.29e-07 4.95e-08 5.71e-08 6.32e-08 4.99e-08 8.09e-08 5.39e-08 2.9e-07 3.02e-08 1.24e-08 3.48e-08 9.86e-09 9.26e-08 0.0 4.68e-08
ENSG00000159658 EFCAB14 -561689 3.1e-07 1.76e-07 5.93e-08 2.31e-07 9.87e-08 8.63e-08 2.24e-07 5.75e-08 1.59e-07 6.75e-08 1.66e-07 1.23e-07 2.38e-07 8.15e-08 5.36e-08 8.71e-08 4.35e-08 1.72e-07 7.39e-08 5.35e-08 1.22e-07 1.47e-07 1.69e-07 3.59e-08 2.36e-07 1.23e-07 1.17e-07 1.12e-07 1.32e-07 1.39e-07 1.14e-07 3.6e-08 3.74e-08 9.58e-08 4.41e-08 2.68e-08 4.43e-08 8.51e-08 6.62e-08 5.45e-08 5.53e-08 1.62e-07 5.39e-08 1.53e-08 3.81e-08 1.71e-08 8.98e-08 2.05e-09 4.83e-08
ENSG00000234329 AL604028.2 505599 3.77e-07 2.5e-07 6.55e-08 2.49e-07 9.82e-08 1.03e-07 2.86e-07 5.68e-08 1.89e-07 9.72e-08 2.04e-07 1.52e-07 3.4e-07 8.54e-08 6.6e-08 9.35e-08 6.17e-08 2.15e-07 7.53e-08 6.29e-08 1.24e-07 1.81e-07 1.89e-07 3.67e-08 3.41e-07 1.39e-07 1.23e-07 1.36e-07 1.44e-07 2.02e-07 1.27e-07 4.61e-08 4.97e-08 1.01e-07 7.44e-08 3.5e-08 6.04e-08 7.92e-08 5.78e-08 7.04e-08 5.04e-08 2.41e-07 4.17e-08 5.74e-09 3.29e-08 6.68e-09 7.52e-08 0.0 4.83e-08