Genes within 1Mb (chr1:46118707:C:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 627544 eQTL 7.65e-06 0.325 0.0721 0.00211 0.00103 0.0108
ENSG00000117448 AKR1A1 568164 eQTL 9.58e-05 -0.214 0.0546 0.00322 0.00257 0.0108
ENSG00000117450 PRDX1 595660 pQTL 1.50e-02 0.198 0.0812 0.0 0.0 0.0112
ENSG00000117480 FAAH -275610 eQTL 3.19e-09 0.608 0.102 0.0 0.0 0.0108
ENSG00000117481 NSUN4 -221470 eQTL 5.37e-25 1.19 0.112 0.0 0.0 0.0108
ENSG00000132763 MMACHC 618407 eQTL 2.95e-02 -0.324 0.149 0.0 0.0 0.0108
ENSG00000159588 CCDC17 494650 eQTL 1.14e-08 -0.392 0.0681 0.0 0.0 0.0108
ENSG00000159596 TMEM69 430526 eQTL 1.93e-02 -0.251 0.107 0.0 0.0 0.0108
ENSG00000225447 RPS15AP10 472510 eQTL 4.49e-02 -0.327 0.163 0.0 0.0 0.0108
ENSG00000234329 AL604028.2 466881 eQTL 9.80e-03 0.313 0.121 0.0 0.0 0.0108
ENSG00000269956 MKNK1-AS1 -419989 eQTL 3.94e-02 -0.232 0.112 0.0 0.0 0.0108
ENSG00000281912 LINC01144 814797 eQTL 4.38e-02 0.331 0.164 0.0 0.0 0.0108


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 627544 2.76e-07 1.42e-07 5.14e-08 2.05e-07 9.25e-08 9.9e-08 1.67e-07 5.43e-08 1.45e-07 6.08e-08 1.73e-07 9.19e-08 2.05e-07 7.37e-08 6.12e-08 7.5e-08 4.01e-08 1.44e-07 6.75e-08 4.78e-08 1.22e-07 1.26e-07 1.44e-07 2.64e-08 1.68e-07 1.25e-07 1.07e-07 1.01e-07 1.23e-07 9.49e-08 1.06e-07 2.93e-08 3.96e-08 8.11e-08 4.84e-08 2.95e-08 5.61e-08 9.23e-08 6.63e-08 3.82e-08 5.13e-08 1.59e-07 5.27e-08 1.08e-08 3.41e-08 1.84e-08 1.19e-07 3.81e-09 4.85e-08
ENSG00000117448 AKR1A1 568164 2.91e-07 1.56e-07 5.64e-08 2.27e-07 1.01e-07 8.45e-08 1.9e-07 5.66e-08 1.44e-07 6.75e-08 1.61e-07 1.11e-07 2.38e-07 7.95e-08 5.82e-08 7.97e-08 4.31e-08 1.64e-07 7.09e-08 5.07e-08 1.25e-07 1.39e-07 1.58e-07 2.68e-08 2.02e-07 1.23e-07 1.12e-07 1.12e-07 1.31e-07 1.06e-07 1.26e-07 3.99e-08 3.59e-08 8.7e-08 3.02e-08 2.74e-08 4.62e-08 9.23e-08 6.58e-08 4.41e-08 5e-08 1.79e-07 5.2e-08 1.14e-08 3.32e-08 1.89e-08 1.22e-07 1.88e-09 4.67e-08
ENSG00000117480 FAAH -275610 1.22e-06 9.19e-07 2.06e-07 4.88e-07 9.61e-08 3.24e-07 8.7e-07 2.7e-07 1.08e-06 2.67e-07 1.26e-06 5.53e-07 1.82e-06 2.29e-07 3.94e-07 4.53e-07 6.67e-07 5.33e-07 4.06e-07 3.93e-07 2.38e-07 8.11e-07 5.87e-07 3.32e-07 1.85e-06 2.48e-07 5.43e-07 4.92e-07 7.61e-07 1.03e-06 5.39e-07 3.28e-08 9.79e-08 2.19e-07 3e-07 3.59e-07 2.9e-07 1.09e-07 1.01e-07 8.85e-09 1.01e-07 1.49e-06 5.03e-08 6.41e-08 1.85e-07 2.07e-08 1.24e-07 2.28e-08 8.28e-08
ENSG00000117481 NSUN4 -221470 1.23e-06 1.07e-06 3.29e-07 1.16e-06 2.31e-07 4.82e-07 1.6e-06 3.37e-07 1.46e-06 4.36e-07 1.84e-06 5.86e-07 2.55e-06 2.79e-07 4.61e-07 8.28e-07 8.06e-07 7.02e-07 8.18e-07 6.9e-07 4.77e-07 1.6e-06 8.93e-07 6.2e-07 2.21e-06 4.32e-07 8.29e-07 7.03e-07 1.29e-06 1.22e-06 7.32e-07 7.37e-08 2.16e-07 5.18e-07 5.85e-07 4.36e-07 5.17e-07 1.53e-07 3.18e-07 9.18e-08 1.93e-07 1.91e-06 5.33e-08 1.31e-07 1.73e-07 7.5e-08 1.68e-07 8.57e-08 1.6e-07
ENSG00000159588 CCDC17 494650 3.27e-07 2.3e-07 6.55e-08 2.53e-07 9.82e-08 8.89e-08 2.63e-07 5.82e-08 1.89e-07 1.05e-07 2.18e-07 1.31e-07 3.95e-07 8.44e-08 5.97e-08 9.6e-08 4.63e-08 2.15e-07 7.11e-08 6.02e-08 1.26e-07 1.89e-07 1.69e-07 3.68e-08 2.74e-07 1.51e-07 1.23e-07 1.42e-07 1.34e-07 1.46e-07 1.52e-07 4.23e-08 3.65e-08 9.08e-08 5.41e-08 4.68e-08 4.84e-08 8.68e-08 6.35e-08 6.55e-08 5.33e-08 2.9e-07 5.27e-08 1.76e-08 4e-08 1.55e-08 1.11e-07 1.92e-09 4.52e-08
ENSG00000159596 TMEM69 430526 4.89e-07 3.35e-07 6.99e-08 3.19e-07 1.08e-07 1.19e-07 3.57e-07 7.12e-08 2.53e-07 1.39e-07 3.66e-07 1.82e-07 6e-07 8.85e-08 8.45e-08 1.14e-07 8.64e-08 2.87e-07 1.13e-07 7.49e-08 1.35e-07 2.3e-07 2.11e-07 4.91e-08 4.46e-07 1.9e-07 1.48e-07 1.69e-07 1.87e-07 2.52e-07 2e-07 5.4e-08 4.76e-08 9.81e-08 1.31e-07 5.7e-08 6.67e-08 7.49e-08 4.83e-08 7.9e-08 5.04e-08 4.82e-07 3.02e-08 1.53e-08 8.06e-08 6.98e-09 7.83e-08 2.13e-09 5.44e-08
ENSG00000159658 \N -600407 2.8e-07 1.53e-07 5.03e-08 2.2e-07 9.79e-08 9.48e-08 1.73e-07 5.53e-08 1.5e-07 6.4e-08 1.59e-07 1.01e-07 2.24e-07 7.64e-08 6.25e-08 7.23e-08 4.12e-08 1.51e-07 6.92e-08 4.8e-08 1.26e-07 1.26e-07 1.5e-07 2.79e-08 1.85e-07 1.26e-07 1.13e-07 1.06e-07 1.24e-07 1.03e-07 1.14e-07 3.03e-08 3.73e-08 8.56e-08 3.46e-08 2.68e-08 5.74e-08 9.26e-08 6.57e-08 3.6e-08 5.14e-08 1.62e-07 5.21e-08 7.26e-09 2.82e-08 1.86e-08 1.19e-07 3.79e-09 4.91e-08