Genes within 1Mb (chr1:46061487:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 570324 eQTL 1.13e-20 -0.139 0.0146 0.0 0.0 0.377
ENSG00000079277 MKNK1 -555356 eQTL 1.36e-03 -0.0408 0.0127 0.0 0.0 0.377
ENSG00000086015 MAST2 274500 eQTL 5.98e-09 0.116 0.0198 0.0 0.0 0.377
ENSG00000117461 PIK3R3 -71549 eQTL 2.20e-32 0.236 0.0192 0.0 0.0 0.377
ENSG00000117481 NSUN4 -278690 eQTL 4.34e-03 -0.0708 0.0247 0.0 0.0 0.377
ENSG00000123472 ATPAF1 -612380 eQTL 1.16e-03 -0.0642 0.0197 0.0 0.0 0.377
ENSG00000132128 LRRC41 -242121 eQTL 4.41e-02 -0.0352 0.0175 0.0 0.0 0.377
ENSG00000142961 MOB3C -555404 eQTL 2.79e-04 -0.0698 0.0191 0.0 0.0 0.377
ENSG00000159588 CCDC17 437430 eQTL 1.00e-13 0.106 0.0141 0.0 0.0 0.377
ENSG00000159592 GPBP1L1 373374 eQTL 2.59e-03 0.0328 0.0109 0.0 0.0 0.377
ENSG00000159596 TMEM69 373306 eQTL 2.00e-11 0.149 0.0219 0.0 0.0 0.377
ENSG00000159658 EFCAB14 -657627 pQTL 2.89e-03 -0.0483 0.0162 0.0 0.0 0.369
ENSG00000159658 EFCAB14 -657627 eQTL 4.59e-02 -0.0389 0.0195 0.0 0.0 0.377
ENSG00000162415 ZSWIM5 755278 eQTL 1.55e-02 0.0518 0.0214 0.00133 0.0 0.377
ENSG00000197429 IPP 310837 eQTL 3.33e-04 0.0742 0.0206 0.00182 0.00146 0.377
ENSG00000225447 RPS15AP10 415290 eQTL 7.89e-09 -0.195 0.0335 0.0 0.0 0.377
ENSG00000230896 AL604028.1 364412 eQTL 4.58e-02 0.0771 0.0385 0.0 0.0 0.377
ENSG00000234329 AL604028.2 409661 eQTL 4.56e-24 -0.25 0.024 0.0 0.0 0.377
ENSG00000280670 CCDC163 561408 eQTL 3.46e-05 -0.156 0.0376 0.0 0.0 0.377


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 570324 7.74e-07 4.97e-07 9.71e-08 3.92e-07 9.45e-08 2.09e-07 5.28e-07 1.31e-07 4.3e-07 2.34e-07 5.93e-07 3.65e-07 7.93e-07 1.23e-07 2.44e-07 2.45e-07 2.48e-07 3.79e-07 1.93e-07 1.63e-07 1.92e-07 3.76e-07 3.07e-07 1.25e-07 7.42e-07 2.54e-07 2.71e-07 2.63e-07 3e-07 4.1e-07 2.6e-07 6.49e-08 4.49e-08 1.38e-07 3.05e-07 8.75e-08 1.01e-07 8.04e-08 6.41e-08 3.12e-08 1.14e-07 4.16e-07 2.63e-08 1.06e-08 1.01e-07 1.31e-08 1.04e-07 7.25e-09 5.43e-08
ENSG00000079277 MKNK1 -555356 8.15e-07 5.6e-07 1.02e-07 4.04e-07 9.33e-08 2.16e-07 5.49e-07 1.4e-07 4.74e-07 2.43e-07 6.56e-07 3.84e-07 8.6e-07 1.41e-07 2.81e-07 2.83e-07 2.98e-07 3.74e-07 2.13e-07 1.71e-07 2.01e-07 3.92e-07 3.11e-07 1.44e-07 8.09e-07 2.7e-07 3.1e-07 2.73e-07 3.58e-07 4.61e-07 2.83e-07 6.84e-08 5.39e-08 1.57e-07 3.34e-07 7.57e-08 1.22e-07 9.46e-08 6.74e-08 2.65e-08 1.47e-07 4.55e-07 2.8e-08 1.1e-08 1.1e-07 1.37e-08 1.01e-07 1.15e-08 4.71e-08
ENSG00000086015 MAST2 274500 1.58e-06 2.13e-06 2.8e-07 1.49e-06 4.93e-07 7.23e-07 1.3e-06 4.39e-07 1.76e-06 7.98e-07 1.81e-06 1.32e-06 3.04e-06 7.13e-07 5.38e-07 1.23e-06 1.13e-06 1.3e-06 5.7e-07 7.99e-07 6.53e-07 1.94e-06 1.58e-06 8.39e-07 2.63e-06 1.1e-06 1.13e-06 1.32e-06 1.74e-06 1.37e-06 7.32e-07 2.21e-07 3.99e-07 8e-07 9.05e-07 6.16e-07 8.1e-07 3.15e-07 7.27e-07 2.18e-07 1.67e-07 2.43e-06 3.68e-07 1.99e-07 3.65e-07 2.94e-07 4.23e-07 2.11e-07 2.46e-07
ENSG00000117461 PIK3R3 -71549 9.29e-06 1.04e-05 1.51e-06 6.53e-06 2.4e-06 4.65e-06 1.15e-05 2.18e-06 1.01e-05 5.36e-06 1.3e-05 5.57e-06 1.74e-05 3.69e-06 3.21e-06 6.63e-06 4.73e-06 7.74e-06 2.93e-06 2.85e-06 5.84e-06 1.04e-05 8.65e-06 3.29e-06 1.71e-05 4.43e-06 6.02e-06 4.64e-06 1.13e-05 8.34e-06 5.8e-06 9.91e-07 1.11e-06 3.43e-06 4.78e-06 2.65e-06 1.79e-06 1.82e-06 2.15e-06 1.01e-06 1.1e-06 1.35e-05 1.39e-06 2.62e-07 8.03e-07 1.74e-06 1.75e-06 7.02e-07 4.55e-07
ENSG00000123472 ATPAF1 -612380 6.09e-07 3.55e-07 8.67e-08 3.48e-07 1.07e-07 1.71e-07 4.53e-07 9.78e-08 3.51e-07 2.06e-07 4.39e-07 3.21e-07 6.27e-07 1.07e-07 1.71e-07 2e-07 1.62e-07 3.3e-07 1.56e-07 1.24e-07 1.76e-07 2.99e-07 2.56e-07 1.06e-07 6.02e-07 2.4e-07 2.43e-07 2.24e-07 2.31e-07 2.89e-07 2e-07 7.33e-08 5.68e-08 1.21e-07 2.7e-07 6.33e-08 1.08e-07 7.75e-08 4.44e-08 5.96e-08 1.03e-07 3.26e-07 2.28e-08 1.94e-08 8.45e-08 1.88e-08 9.46e-08 2.99e-09 5.71e-08
ENSG00000132128 LRRC41 -242121 2.14e-06 2.44e-06 3.32e-07 1.85e-06 4.59e-07 8.48e-07 1.8e-06 6.41e-07 1.86e-06 9.51e-07 2.43e-06 1.27e-06 3.23e-06 1.29e-06 9.17e-07 1.7e-06 9.79e-07 1.93e-06 9.07e-07 1.26e-06 1.1e-06 2.9e-06 2e-06 9.81e-07 3.5e-06 1.35e-06 1.39e-06 1.79e-06 1.86e-06 1.67e-06 1.53e-06 4.14e-07 5.03e-07 1.25e-06 1.09e-06 8.7e-07 8.38e-07 4.38e-07 1.21e-06 3.57e-07 2.23e-07 3.16e-06 4.11e-07 1.87e-07 3.49e-07 3.1e-07 7.71e-07 2.34e-07 2.05e-07
ENSG00000142961 MOB3C -555404 8.15e-07 5.6e-07 1.02e-07 4.04e-07 9.33e-08 2.16e-07 5.49e-07 1.4e-07 4.74e-07 2.43e-07 6.56e-07 3.84e-07 8.6e-07 1.41e-07 2.81e-07 2.83e-07 2.98e-07 3.74e-07 2.13e-07 1.71e-07 2.01e-07 3.92e-07 3.11e-07 1.44e-07 8.09e-07 2.7e-07 3.1e-07 2.73e-07 3.58e-07 4.61e-07 2.83e-07 6.84e-08 5.39e-08 1.57e-07 3.34e-07 7.57e-08 1.22e-07 9.46e-08 6.74e-08 2.65e-08 1.47e-07 4.55e-07 2.8e-08 1.1e-08 1.1e-07 1.37e-08 1.01e-07 1.15e-08 4.71e-08
ENSG00000159588 CCDC17 437430 1.25e-06 9.27e-07 2.41e-07 4.03e-07 1.81e-07 4.06e-07 8.73e-07 2.84e-07 1.09e-06 3.24e-07 1.16e-06 5.62e-07 1.53e-06 2.33e-07 4.12e-07 6.22e-07 7.39e-07 5.27e-07 3.77e-07 4.65e-07 2.83e-07 8.11e-07 5.66e-07 4.09e-07 1.69e-06 2.98e-07 6.16e-07 5.44e-07 7.07e-07 8.63e-07 4.48e-07 4.99e-08 1.72e-07 3.49e-07 3.67e-07 3.02e-07 4.12e-07 1.5e-07 1.71e-07 4.07e-08 2.79e-07 1.08e-06 6.68e-08 2.71e-08 1.89e-07 7.43e-08 1.9e-07 8.16e-08 6.51e-08
ENSG00000159596 TMEM69 373306 1.26e-06 9.28e-07 3.48e-07 1.02e-06 3.09e-07 4.92e-07 1.41e-06 3.66e-07 1.39e-06 4.31e-07 1.49e-06 6.57e-07 2.1e-06 2.79e-07 5.4e-07 9.17e-07 7.94e-07 6.13e-07 7.25e-07 6.49e-07 5.8e-07 1.36e-06 8.52e-07 6.23e-07 2.1e-06 4.17e-07 8.98e-07 7.14e-07 1.23e-06 1.18e-06 5.88e-07 2.08e-07 2.08e-07 6.68e-07 5.8e-07 4.74e-07 6.66e-07 1.68e-07 4.18e-07 2.51e-07 2.96e-07 1.57e-06 5.73e-08 9.61e-08 1.81e-07 1.25e-07 2.3e-07 8.93e-08 1.14e-07
ENSG00000159658 EFCAB14 -657627 4.89e-07 2.88e-07 7.76e-08 2.87e-07 1.07e-07 1.54e-07 3.94e-07 7.79e-08 2.76e-07 1.65e-07 3.32e-07 2.33e-07 5.09e-07 9.18e-08 1.32e-07 1.63e-07 9.3e-08 2.9e-07 9.97e-08 8.41e-08 1.59e-07 2.48e-07 2.11e-07 6.52e-08 4.46e-07 2.2e-07 1.85e-07 1.88e-07 1.87e-07 2.01e-07 1.86e-07 8.14e-08 5.64e-08 1.24e-07 1.83e-07 5.05e-08 9.9e-08 6.46e-08 5.54e-08 7.55e-08 8.48e-08 2.65e-07 3.31e-08 1.78e-08 5.49e-08 1.3e-08 9.84e-08 0.0 4.74e-08
ENSG00000162415 ZSWIM5 755278 3.53e-07 1.78e-07 6.57e-08 2.43e-07 1.08e-07 1.08e-07 2.86e-07 6.2e-08 1.96e-07 1.15e-07 2.07e-07 1.62e-07 3.4e-07 8.66e-08 7.98e-08 1.1e-07 5.57e-08 2.21e-07 7.11e-08 7.83e-08 1.33e-07 1.98e-07 1.69e-07 4.37e-08 2.74e-07 1.82e-07 1.31e-07 1.48e-07 1.34e-07 1.38e-07 1.27e-07 4.71e-08 4.86e-08 1.01e-07 6.98e-08 3.36e-08 6.2e-08 6.78e-08 4.83e-08 7.17e-08 3.6e-08 1.62e-07 3.19e-08 1.14e-08 3.48e-08 1.01e-08 7.66e-08 2.2e-09 4.97e-08
ENSG00000197429 IPP 310837 1.28e-06 1.34e-06 2.99e-07 1.25e-06 3.68e-07 6.38e-07 1.46e-06 4.39e-07 1.72e-06 6.69e-07 2.1e-06 9.31e-07 2.62e-06 3.39e-07 3.88e-07 9.68e-07 1.03e-06 1.05e-06 6.4e-07 4.58e-07 7.69e-07 1.95e-06 1.09e-06 5.94e-07 2.43e-06 7.94e-07 1.02e-06 9.81e-07 1.62e-06 1.19e-06 7.84e-07 2.62e-07 3.23e-07 5.62e-07 5.82e-07 4.9e-07 6.79e-07 3.07e-07 5.39e-07 2.44e-07 3.03e-07 1.8e-06 1.68e-07 1.66e-07 3.07e-07 2.46e-07 2.69e-07 9.26e-08 2.46e-07
ENSG00000225447 RPS15AP10 415290 1.24e-06 9.35e-07 3e-07 5.92e-07 2.28e-07 4.43e-07 1.07e-06 3.33e-07 1.13e-06 3.76e-07 1.33e-06 5.49e-07 1.68e-06 2.61e-07 4.35e-07 7.13e-07 7.72e-07 5.72e-07 4.7e-07 6.25e-07 3.5e-07 9.92e-07 6.04e-07 5.01e-07 1.92e-06 3.47e-07 6.81e-07 6.51e-07 8.81e-07 9.22e-07 5.37e-07 1.3e-07 2.31e-07 4.29e-07 4.17e-07 3.22e-07 4.75e-07 1.45e-07 2.78e-07 8.76e-08 2.91e-07 1.22e-06 5.65e-08 4.19e-08 1.83e-07 8.9e-08 1.9e-07 8.88e-08 9.32e-08
ENSG00000230896 AL604028.1 364412 1.33e-06 9e-07 3.49e-07 1.14e-06 3.4e-07 5.4e-07 1.52e-06 3.44e-07 1.46e-06 4.7e-07 1.65e-06 6.58e-07 2.19e-06 3e-07 5.5e-07 9.19e-07 8.54e-07 6.5e-07 7.7e-07 6.43e-07 6.51e-07 1.49e-06 9.21e-07 6.31e-07 2.28e-06 5.15e-07 9.41e-07 7.51e-07 1.28e-06 1.2e-06 6.14e-07 2.52e-07 2.02e-07 7.03e-07 5.85e-07 4.59e-07 7.46e-07 2.04e-07 4.67e-07 3.24e-07 2.72e-07 1.49e-06 5.89e-08 8.96e-08 1.72e-07 1.19e-07 2.37e-07 8.42e-08 1.35e-07
ENSG00000234329 AL604028.2 409661 1.24e-06 9.37e-07 3.08e-07 6.38e-07 2.33e-07 4.63e-07 1.1e-06 3.24e-07 1.15e-06 3.77e-07 1.35e-06 6.19e-07 1.75e-06 2.68e-07 4.55e-07 7.41e-07 7.96e-07 5.48e-07 4.95e-07 6.7e-07 3.91e-07 1.05e-06 6.63e-07 5.53e-07 1.92e-06 3.63e-07 6.85e-07 7.22e-07 8.81e-07 9.45e-07 5.48e-07 1.54e-07 2.36e-07 4.57e-07 4.05e-07 3.47e-07 5.32e-07 1.47e-07 2.95e-07 8.93e-08 2.93e-07 1.29e-06 6.64e-08 4.23e-08 1.74e-07 9.94e-08 1.93e-07 8.43e-08 8.21e-08
ENSG00000280670 CCDC163 561408 7.87e-07 5.33e-07 1.05e-07 3.95e-07 9.86e-08 2.12e-07 5.54e-07 1.38e-07 4.61e-07 2.37e-07 6.39e-07 3.73e-07 8.34e-07 1.34e-07 2.57e-07 2.69e-07 2.53e-07 3.82e-07 2.12e-07 1.69e-07 1.97e-07 3.87e-07 3.04e-07 1.34e-07 7.71e-07 2.6e-07 2.94e-07 2.69e-07 3.43e-07 4.3e-07 2.73e-07 6.7e-08 4.62e-08 1.42e-07 3.4e-07 7.98e-08 1.12e-07 9.33e-08 6.58e-08 2.59e-08 1.36e-07 4.42e-07 2.75e-08 1.62e-08 1.08e-07 1.35e-08 1.03e-07 1.13e-08 4.97e-08