Genes within 1Mb (chr1:46021880:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 530717 eQTL 1.36e-19 -0.135 0.0146 0.0 0.0 0.368
ENSG00000079277 MKNK1 -594963 eQTL 7.99e-03 -0.0339 0.0127 0.0 0.0 0.368
ENSG00000086015 MAST2 234893 eQTL 5.25e-08 0.109 0.0198 0.0 0.0 0.368
ENSG00000117461 PIK3R3 -111156 eQTL 2.75e-33 0.239 0.0192 0.00113 0.00185 0.368
ENSG00000117481 NSUN4 -318297 eQTL 4.55e-03 -0.0706 0.0248 0.0 0.0 0.368
ENSG00000123472 ATPAF1 -651987 eQTL 5.33e-04 -0.0686 0.0198 0.0 0.0 0.368
ENSG00000142961 MOB3C -595011 eQTL 1.76e-03 -0.0603 0.0192 0.0 0.0 0.368
ENSG00000159588 CCDC17 397823 eQTL 8.96e-15 0.111 0.0141 0.0 0.0 0.368
ENSG00000159592 GPBP1L1 333767 eQTL 8.40e-03 0.0288 0.0109 0.0 0.0 0.368
ENSG00000159596 TMEM69 333699 eQTL 2.94e-10 0.14 0.022 0.0 0.0 0.368
ENSG00000159658 EFCAB14 -697234 pQTL 1.26e-03 -0.0525 0.0163 0.00121 0.0 0.361
ENSG00000162415 ZSWIM5 715671 eQTL 4.09e-02 0.0439 0.0214 0.0 0.0 0.368
ENSG00000197429 IPP 271230 eQTL 1.14e-04 0.0799 0.0206 0.00449 0.00384 0.368
ENSG00000225447 RPS15AP10 375683 eQTL 2.02e-08 -0.19 0.0336 0.0 0.0 0.368
ENSG00000230896 AL604028.1 324805 eQTL 3.02e-02 0.0838 0.0386 0.0 0.0 0.368
ENSG00000234329 AL604028.2 370054 eQTL 1.30e-24 -0.253 0.0241 0.0 0.0 0.368
ENSG00000280670 CCDC163 521801 eQTL 1.27e-05 -0.165 0.0376 0.0 0.0 0.368


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 530717 1.27e-06 9.07e-07 2.89e-07 3.44e-07 1.09e-07 3.18e-07 8.36e-07 2e-07 7.85e-07 3.17e-07 1.13e-06 5.95e-07 1.35e-06 2.06e-07 3.56e-07 3.79e-07 5.64e-07 5.31e-07 3.43e-07 3.72e-07 2.5e-07 6.2e-07 4.77e-07 3.32e-07 1.72e-06 2.48e-07 4.62e-07 5e-07 6.84e-07 8.5e-07 4.9e-07 4.31e-08 1.31e-07 2.06e-07 3.41e-07 2.25e-07 1.94e-07 1.26e-07 7.54e-08 2.68e-08 1.04e-07 8.45e-07 6.3e-08 5.67e-08 1.49e-07 7.16e-08 1.46e-07 7.28e-08 5.84e-08
ENSG00000079277 MKNK1 -594963 9.36e-07 6.46e-07 1.57e-07 4.35e-07 9.82e-08 2.46e-07 6.19e-07 1.11e-07 4.74e-07 2.43e-07 9.46e-07 4.75e-07 9.57e-07 1.48e-07 2.18e-07 2.36e-07 3.35e-07 4.16e-07 2.56e-07 1.86e-07 1.92e-07 4.38e-07 3.69e-07 2.17e-07 1.2e-06 2.56e-07 2.71e-07 3.13e-07 4.22e-07 6.27e-07 3.95e-07 6.84e-08 4.57e-08 1.49e-07 3.38e-07 1.19e-07 1.06e-07 8.15e-08 4.23e-08 5.64e-08 5.43e-08 5.52e-07 4.24e-08 1.94e-08 1.01e-07 3.87e-08 9.95e-08 2.31e-08 6.14e-08
ENSG00000086015 MAST2 234893 4.36e-06 4.74e-06 9.35e-07 2.59e-06 8.58e-07 1.33e-06 4.07e-06 9.72e-07 3.82e-06 1.92e-06 4.96e-06 3.29e-06 7.58e-06 2.04e-06 1.46e-06 2.49e-06 2.06e-06 2.74e-06 1.36e-06 1.01e-06 1.97e-06 4.42e-06 3.5e-06 1.77e-06 5.3e-06 1.33e-06 2.21e-06 1.72e-06 4.32e-06 3.62e-06 2.54e-06 5.93e-07 6.12e-07 1.8e-06 2.04e-06 8.52e-07 9.23e-07 4.74e-07 1.32e-06 3.46e-07 2.23e-07 4.84e-06 4.35e-07 1.54e-07 3.27e-07 6.03e-07 7.44e-07 3.18e-07 3.52e-07
ENSG00000117461 PIK3R3 -111156 8.88e-06 1.14e-05 1.39e-06 6.2e-06 2.28e-06 4.35e-06 1.16e-05 2.09e-06 9.72e-06 4.99e-06 1.29e-05 5.73e-06 1.66e-05 3.63e-06 3.15e-06 6.47e-06 4.74e-06 7.37e-06 2.61e-06 2.79e-06 4.96e-06 9.57e-06 8e-06 3.25e-06 1.5e-05 3.73e-06 4.93e-06 4.09e-06 1.1e-05 8.53e-06 5.69e-06 9.97e-07 1.17e-06 3.06e-06 4.81e-06 2.36e-06 1.73e-06 2e-06 2.16e-06 9.77e-07 9.74e-07 1.29e-05 1.42e-06 1.38e-07 6.81e-07 1.77e-06 1.38e-06 7.99e-07 4.89e-07
ENSG00000123472 ATPAF1 -651987 7.76e-07 4.93e-07 1.14e-07 3.87e-07 1.05e-07 1.74e-07 5.28e-07 8.17e-08 3.32e-07 2.01e-07 6.28e-07 3.61e-07 6.98e-07 1.07e-07 1.45e-07 1.76e-07 1.73e-07 3.79e-07 1.7e-07 1.32e-07 1.57e-07 3.15e-07 3.02e-07 1.29e-07 7.71e-07 2.39e-07 2.08e-07 2.68e-07 2.98e-07 4.1e-07 3.32e-07 7.79e-08 5.6e-08 1.17e-07 2.7e-07 6.83e-08 9.77e-08 6.89e-08 5.25e-08 8.61e-08 3.27e-08 3.66e-07 1.7e-08 5.89e-09 7.93e-08 1.31e-08 9.98e-08 7.25e-09 5.13e-08
ENSG00000132780 \N 438034 1.32e-06 9e-07 2.48e-07 1.14e-06 2.46e-07 5.15e-07 1.64e-06 3.49e-07 1.29e-06 4.11e-07 1.82e-06 7.43e-07 2.1e-06 2.67e-07 5.08e-07 8.11e-07 7.87e-07 6.96e-07 7.55e-07 6.4e-07 3.95e-07 1.42e-06 9.22e-07 6.51e-07 2.19e-06 4.17e-07 7.31e-07 7.19e-07 1.29e-06 1.28e-06 7.47e-07 1.73e-07 2.02e-07 5.67e-07 5.61e-07 4.62e-07 4.82e-07 1.61e-07 1.73e-07 2.99e-08 2.44e-07 1.53e-06 6.13e-08 1.25e-07 1.61e-07 1.12e-07 2.38e-07 7e-08 1.47e-07
ENSG00000142961 MOB3C -595011 9.36e-07 6.46e-07 1.57e-07 4.35e-07 9.82e-08 2.46e-07 6.19e-07 1.11e-07 4.74e-07 2.43e-07 9.46e-07 4.75e-07 9.57e-07 1.48e-07 2.18e-07 2.36e-07 3.35e-07 4.16e-07 2.56e-07 1.86e-07 1.92e-07 4.38e-07 3.69e-07 2.17e-07 1.2e-06 2.56e-07 2.71e-07 3.13e-07 4.22e-07 6.27e-07 3.95e-07 6.84e-08 4.57e-08 1.49e-07 3.38e-07 1.19e-07 1.06e-07 8.15e-08 4.23e-08 5.64e-08 5.43e-08 5.52e-07 4.24e-08 1.94e-08 1.01e-07 3.87e-08 9.95e-08 2.31e-08 6.14e-08
ENSG00000159588 CCDC17 397823 1.27e-06 1.25e-06 2.43e-07 1.26e-06 3.51e-07 6.06e-07 1.52e-06 3.98e-07 1.44e-06 6.29e-07 2.04e-06 9.26e-07 2.55e-06 2.68e-07 5.32e-07 9.07e-07 9.05e-07 9.65e-07 8.04e-07 5.01e-07 6.61e-07 1.89e-06 8.94e-07 5.41e-07 2.36e-06 7.59e-07 9.35e-07 8.14e-07 1.59e-06 1.22e-06 8.3e-07 2.58e-07 2.79e-07 6.93e-07 5.3e-07 4.6e-07 6.19e-07 2.44e-07 3.6e-07 1.17e-07 2.71e-07 1.63e-06 1.53e-07 1.91e-07 1.67e-07 2.14e-07 2.09e-07 6.05e-08 1.91e-07
ENSG00000159596 TMEM69 333699 1.92e-06 2.42e-06 3.3e-07 1.63e-06 4.41e-07 7.89e-07 1.41e-06 4.27e-07 1.77e-06 6.73e-07 2.02e-06 1.29e-06 3.25e-06 8.9e-07 4.38e-07 1.07e-06 1.1e-06 1.55e-06 5.54e-07 9.31e-07 6.15e-07 2.15e-06 1.56e-06 9.3e-07 2.87e-06 1.17e-06 1.04e-06 1.39e-06 1.71e-06 1.61e-06 1.31e-06 2.86e-07 4.3e-07 6.66e-07 9.1e-07 6.4e-07 6.93e-07 3.15e-07 4.85e-07 2.8e-07 3.35e-07 2.66e-06 4.1e-07 1.95e-07 3.05e-07 3.21e-07 4.02e-07 2.49e-07 2.23e-07
ENSG00000159658 EFCAB14 -697234 6.09e-07 3.35e-07 1.05e-07 3.58e-07 1.02e-07 1.54e-07 4.42e-07 7.56e-08 2.6e-07 1.6e-07 4.3e-07 2.98e-07 5.39e-07 9.18e-08 1.01e-07 1.39e-07 9.53e-08 3.12e-07 1.36e-07 8.25e-08 1.39e-07 2.63e-07 2.33e-07 1.03e-07 6.02e-07 2.29e-07 1.74e-07 2.01e-07 2.19e-07 2.75e-07 2.55e-07 8.02e-08 5.55e-08 1.15e-07 1.69e-07 5.41e-08 6.77e-08 5.8e-08 4.83e-08 6.92e-08 5.03e-08 2.74e-07 2.89e-08 1.07e-08 4.91e-08 1.84e-08 9.38e-08 2.94e-09 5.54e-08
ENSG00000162415 ZSWIM5 715671 5.59e-07 3.11e-07 8.9e-08 3.19e-07 1.06e-07 1.32e-07 4.09e-07 6.72e-08 2.53e-07 1.46e-07 3.92e-07 2.49e-07 4.74e-07 8.85e-08 9.2e-08 1.17e-07 8.53e-08 2.96e-07 9.97e-08 8.39e-08 1.33e-07 2.45e-07 2.2e-07 7.36e-08 5.15e-07 2.13e-07 1.57e-07 1.88e-07 2.03e-07 2.26e-07 2.19e-07 6.58e-08 5.53e-08 1.01e-07 1.39e-07 5.05e-08 6.39e-08 5.8e-08 5.8e-08 6.55e-08 4.72e-08 2.6e-07 3.37e-08 1.54e-08 4e-08 1.75e-08 8.94e-08 2.8e-09 5.71e-08
ENSG00000197429 IPP 271230 3.59e-06 3.64e-06 6.9e-07 1.9e-06 4.79e-07 8e-07 2.43e-06 8.45e-07 2.37e-06 1.21e-06 3.52e-06 2.51e-06 5.05e-06 1.39e-06 9.09e-07 1.96e-06 1.56e-06 2.12e-06 1.5e-06 1.26e-06 1.26e-06 3.47e-06 2.69e-06 1.4e-06 4.54e-06 1.28e-06 1.42e-06 1.56e-06 3.2e-06 2.5e-06 1.99e-06 3.98e-07 6.49e-07 1.26e-06 1.67e-06 1.02e-06 7.18e-07 4.21e-07 1.12e-06 3.34e-07 1.52e-07 4.04e-06 5.89e-07 1.8e-07 3.29e-07 3.5e-07 8.94e-07 2.47e-07 1.74e-07
ENSG00000225447 RPS15AP10 375683 1.32e-06 1.47e-06 2.91e-07 1.22e-06 3.53e-07 6.46e-07 1.27e-06 4.11e-07 1.78e-06 6.2e-07 2.02e-06 1.3e-06 2.62e-06 3.39e-07 4.48e-07 9.92e-07 9.8e-07 1.09e-06 6.4e-07 5.06e-07 8.02e-07 1.97e-06 1.1e-06 5.94e-07 2.48e-06 8.02e-07 1.04e-06 1.01e-06 1.63e-06 1.31e-06 7.6e-07 2.6e-07 3.49e-07 6.16e-07 5.93e-07 5.06e-07 6.97e-07 3.1e-07 4.67e-07 2.93e-07 2.84e-07 1.8e-06 2.92e-07 1.99e-07 2.22e-07 3.22e-07 2.6e-07 1.41e-07 2.61e-07
ENSG00000234329 AL604028.2 370054 1.43e-06 1.57e-06 2.8e-07 1.28e-06 3.73e-07 6.48e-07 1.26e-06 3.96e-07 1.75e-06 6.61e-07 1.9e-06 1.29e-06 2.59e-06 3.61e-07 4.96e-07 9.52e-07 9.77e-07 1.13e-06 5.84e-07 5.62e-07 8.13e-07 1.92e-06 1.09e-06 6.2e-07 2.44e-06 8.38e-07 1.06e-06 1.05e-06 1.74e-06 1.31e-06 7.63e-07 2.63e-07 3.56e-07 5.73e-07 6.46e-07 5.31e-07 6.93e-07 3.16e-07 5.01e-07 3.24e-07 2.87e-07 1.95e-06 3.5e-07 1.99e-07 2.47e-07 3.28e-07 2.28e-07 1.44e-07 2.76e-07
ENSG00000269956 \N -516816 1.21e-06 9.09e-07 2.95e-07 3.89e-07 9.77e-08 3.36e-07 9.43e-07 2.21e-07 8.29e-07 2.98e-07 1.26e-06 5.73e-07 1.48e-06 2.1e-07 3.86e-07 4.12e-07 6.29e-07 5.27e-07 3.84e-07 4.13e-07 2.55e-07 7.06e-07 5.49e-07 4.09e-07 1.8e-06 2.54e-07 4.9e-07 5.27e-07 7.07e-07 9.08e-07 5.42e-07 4.53e-08 1.48e-07 2.19e-07 3.22e-07 2.76e-07 1.93e-07 1.18e-07 7.41e-08 2.83e-08 1.09e-07 9.5e-07 6.68e-08 5.72e-08 1.69e-07 7.57e-08 1.47e-07 8.34e-08 8.09e-08
ENSG00000280670 CCDC163 521801 1.25e-06 8.72e-07 3.08e-07 3.63e-07 1.04e-07 3.22e-07 8.73e-07 2.04e-07 8.36e-07 3.05e-07 1.22e-06 5.62e-07 1.43e-06 2.12e-07 3.96e-07 4.14e-07 6.29e-07 5.27e-07 3.74e-07 4.12e-07 2.42e-07 6.91e-07 5.41e-07 3.62e-07 1.74e-06 2.47e-07 4.83e-07 5.31e-07 7e-07 8.63e-07 5.37e-07 4.44e-08 1.36e-07 2.15e-07 3.16e-07 2.56e-07 1.91e-07 1.16e-07 7.9e-08 2.77e-08 1.17e-07 9.59e-07 7.3e-08 6.41e-08 1.6e-07 7.36e-08 1.45e-07 8.16e-08 7.91e-08