Genes within 1Mb (chr1:45994995:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 503832 eQTL 2.54e-17 0.133 0.0154 0.0 0.0 0.305
ENSG00000079277 MKNK1 -621848 eQTL 4.47e-02 0.0268 0.0133 0.0 0.0 0.305
ENSG00000086015 MAST2 208008 eQTL 7.66e-25 -0.211 0.0199 0.0 0.0 0.305
ENSG00000117448 AKR1A1 444452 eQTL 3.07e-02 0.026 0.012 0.0 0.0 0.305
ENSG00000117461 PIK3R3 -138041 eQTL 2.84e-28 -0.231 0.0203 0.0 0.0 0.305
ENSG00000117480 FAAH -399322 eQTL 4.38e-02 -0.0457 0.0226 0.0 0.0 0.305
ENSG00000123472 ATPAF1 -678872 eQTL 9.60e-03 0.0537 0.0207 0.0 0.0 0.305
ENSG00000132763 MMACHC 494695 eQTL 4.78e-02 0.0646 0.0326 0.0 0.0 0.305
ENSG00000142961 MOB3C -621896 eQTL 2.77e-04 0.0731 0.02 0.00117 0.0 0.305
ENSG00000159588 CCDC17 370938 eQTL 4.16e-02 -0.0309 0.0151 0.0 0.0 0.305
ENSG00000159592 GPBP1L1 306882 eQTL 2.68e-05 -0.0478 0.0113 0.00308 0.00258 0.305
ENSG00000159596 TMEM69 306814 eQTL 1.42e-12 -0.164 0.0229 0.0 0.0 0.305
ENSG00000159658 EFCAB14 -724119 pQTL 5.18e-03 0.0478 0.0171 0.0 0.0 0.3
ENSG00000159658 EFCAB14 -724119 eQTL 3.15e-02 0.0439 0.0204 0.0 0.0 0.305
ENSG00000197429 IPP 244345 eQTL 3.62e-03 -0.063 0.0216 0.0 0.0 0.305
ENSG00000225447 RPS15AP10 348798 eQTL 5.75e-14 0.265 0.0347 0.0 0.0 0.305
ENSG00000234329 AL604028.2 343169 eQTL 1.34e-32 0.304 0.0246 0.0 0.0 0.305
ENSG00000280670 CCDC163 494916 eQTL 7.85e-06 0.177 0.0393 0.0 0.0 0.305
ENSG00000281912 LINC01144 691085 eQTL 4.58e-02 -0.0718 0.0359 0.0 0.0 0.305


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 503832 7.87e-07 4.93e-07 8.67e-08 3.48e-07 9.93e-08 1.57e-07 5.01e-07 9.69e-08 3.51e-07 2.14e-07 5.58e-07 3.27e-07 6.77e-07 1.1e-07 1.48e-07 1.96e-07 1.69e-07 3.58e-07 1.51e-07 8.25e-08 1.68e-07 3.1e-07 3.19e-07 1.25e-07 6.65e-07 2.33e-07 2.08e-07 1.97e-07 2.98e-07 3.93e-07 2.54e-07 5.54e-08 4.96e-08 1.25e-07 2.7e-07 6.23e-08 9.77e-08 5.8e-08 5.28e-08 5.8e-08 4.36e-08 4.82e-07 3.19e-08 1.14e-08 8.24e-08 1.32e-08 9.73e-08 0.0 4.68e-08
ENSG00000086015 MAST2 208008 2.08e-06 2.46e-06 2.74e-07 1.48e-06 4.85e-07 7.29e-07 1.29e-06 4.39e-07 1.67e-06 7.42e-07 1.96e-06 1.49e-06 3.31e-06 8.94e-07 4.59e-07 1.23e-06 1.15e-06 1.55e-06 5.52e-07 7.22e-07 6.5e-07 1.92e-06 1.94e-06 9.91e-07 2.73e-06 1.12e-06 1.14e-06 1.05e-06 1.76e-06 1.63e-06 1.07e-06 2.31e-07 3.58e-07 1.02e-06 9.25e-07 6.4e-07 7.56e-07 3.38e-07 7.18e-07 2.03e-07 2.88e-07 2.99e-06 3.52e-07 1.38e-07 3.52e-07 3.22e-07 3.7e-07 1.45e-07 2.46e-07
ENSG00000117448 AKR1A1 444452 9.83e-07 6.56e-07 1e-07 4.31e-07 9.86e-08 2.12e-07 6.06e-07 1.48e-07 5.3e-07 2.8e-07 9.07e-07 4.24e-07 9.65e-07 1.6e-07 2.48e-07 2.89e-07 3.52e-07 4.24e-07 2.13e-07 1.43e-07 2.05e-07 4.14e-07 4.08e-07 1.94e-07 1.02e-06 2.6e-07 2.94e-07 2.63e-07 4.39e-07 6.35e-07 3.66e-07 7.69e-08 5.58e-08 1.69e-07 3.48e-07 9.51e-08 8.28e-08 7.75e-08 6.81e-08 2.68e-08 8.61e-08 7.36e-07 2.71e-08 1.73e-08 1.25e-07 1.27e-08 1.1e-07 3.09e-09 5.71e-08
ENSG00000117461 PIK3R3 -138041 4.3e-06 4.48e-06 6.67e-07 1.97e-06 1e-06 1.03e-06 3e-06 9.98e-07 3.19e-06 1.83e-06 4.24e-06 2.72e-06 6.75e-06 1.62e-06 1.2e-06 2.42e-06 1.82e-06 2.78e-06 1.45e-06 8.79e-07 1.93e-06 3.91e-06 3.42e-06 1.57e-06 4.9e-06 1.33e-06 1.87e-06 1.48e-06 4.11e-06 3.75e-06 1.96e-06 4.9e-07 7.33e-07 1.87e-06 1.92e-06 9.08e-07 8.96e-07 4.67e-07 1.07e-06 3.45e-07 4.41e-07 5.26e-06 5.27e-07 1.87e-07 3.58e-07 3.21e-07 7.24e-07 2.38e-07 1.76e-07
ENSG00000142961 MOB3C -621896 4.37e-07 2.4e-07 6.45e-08 2.49e-07 1.07e-07 9.31e-08 3.11e-07 6.57e-08 2.01e-07 1.21e-07 2.62e-07 1.72e-07 3.6e-07 8.54e-08 6.93e-08 1.13e-07 5.73e-08 2.56e-07 7.27e-08 5.61e-08 1.33e-07 2.06e-07 2.11e-07 3.83e-08 3.27e-07 1.71e-07 1.29e-07 1.47e-07 1.47e-07 1.8e-07 1.59e-07 4.32e-08 3.46e-08 9.9e-08 7.55e-08 3.36e-08 6.14e-08 8.17e-08 5.59e-08 6.92e-08 4.53e-08 2.6e-07 3.55e-08 1.1e-08 3.34e-08 6.83e-09 7.12e-08 1.98e-09 4.69e-08
ENSG00000159592 GPBP1L1 306882 1.31e-06 9.73e-07 2.79e-07 7.82e-07 2.66e-07 4.57e-07 1.45e-06 3.43e-07 1.29e-06 4.19e-07 1.57e-06 6.2e-07 2.04e-06 2.67e-07 4.95e-07 8.28e-07 7.74e-07 6.45e-07 5.72e-07 6.39e-07 4.39e-07 1.24e-06 8.53e-07 6.4e-07 2.16e-06 3.91e-07 7.27e-07 7.25e-07 1.28e-06 1.25e-06 6.29e-07 4.94e-08 1.78e-07 6.83e-07 5.34e-07 4.49e-07 4.75e-07 1.56e-07 3.33e-07 1.92e-07 2.99e-07 1.53e-06 6.94e-08 1.28e-08 2.01e-07 9.94e-08 1.97e-07 8.74e-08 6.51e-08
ENSG00000159596 TMEM69 306814 1.31e-06 9.73e-07 2.79e-07 7.82e-07 2.66e-07 4.57e-07 1.45e-06 3.43e-07 1.29e-06 4.19e-07 1.57e-06 6.2e-07 2.04e-06 2.67e-07 4.95e-07 8.28e-07 7.74e-07 6.45e-07 5.72e-07 6.39e-07 4.39e-07 1.24e-06 8.53e-07 6.4e-07 2.16e-06 3.91e-07 7.27e-07 7.25e-07 1.28e-06 1.25e-06 6.29e-07 4.94e-08 1.78e-07 6.83e-07 5.34e-07 4.49e-07 4.75e-07 1.56e-07 3.33e-07 1.92e-07 2.99e-07 1.53e-06 6.94e-08 1.28e-08 2.01e-07 9.94e-08 1.97e-07 8.74e-08 6.51e-08
ENSG00000159658 EFCAB14 -724119 3.1e-07 1.59e-07 5.93e-08 2.26e-07 1.03e-07 8.33e-08 2.16e-07 5.56e-08 1.71e-07 9.72e-08 1.76e-07 1.31e-07 2.38e-07 8.07e-08 5.36e-08 8.71e-08 4.31e-08 1.8e-07 7.18e-08 4.95e-08 1.22e-07 1.56e-07 1.69e-07 3.58e-08 2.28e-07 1.31e-07 1.19e-07 1.1e-07 1.32e-07 1.1e-07 1.26e-07 3.54e-08 3.43e-08 9.81e-08 3.97e-08 3.07e-08 4.41e-08 8.63e-08 6.28e-08 4.41e-08 5.42e-08 1.55e-07 5.08e-08 1.3e-08 2.82e-08 1.68e-08 9.29e-08 1.88e-09 5e-08
ENSG00000225447 RPS15AP10 348798 1.27e-06 9.44e-07 2.05e-07 4.19e-07 1.64e-07 3.54e-07 1.02e-06 2.88e-07 1.14e-06 3.8e-07 1.36e-06 5.82e-07 1.59e-06 2.57e-07 4.55e-07 6e-07 7.78e-07 5.71e-07 4e-07 3.72e-07 2.8e-07 8.66e-07 7.96e-07 5.25e-07 1.92e-06 2.9e-07 5.83e-07 4.98e-07 9.15e-07 1.01e-06 5.39e-07 4.21e-08 9.46e-08 4.04e-07 3.52e-07 2.94e-07 3.26e-07 1.21e-07 1.34e-07 3.03e-08 1.97e-07 1.43e-06 6.37e-08 5.68e-09 1.81e-07 5.38e-08 1.71e-07 3.17e-08 5.94e-08
ENSG00000234329 AL604028.2 343169 1.25e-06 9.34e-07 2.52e-07 4.37e-07 1.81e-07 4.02e-07 1.09e-06 3.2e-07 1.12e-06 3.89e-07 1.35e-06 5.71e-07 1.62e-06 2.57e-07 4.37e-07 6.35e-07 7.76e-07 5.68e-07 3.56e-07 3.99e-07 2.97e-07 9.64e-07 7.52e-07 5.39e-07 1.92e-06 2.98e-07 6.23e-07 5.29e-07 9.39e-07 1.04e-06 5.2e-07 4.31e-08 9.79e-08 4.51e-07 3.81e-07 3.1e-07 3.64e-07 1.18e-07 1.38e-07 4.15e-08 2.12e-07 1.53e-06 7.3e-08 5.77e-09 1.73e-07 7.64e-08 1.83e-07 3.84e-08 6.12e-08
ENSG00000280670 CCDC163 494916 8.21e-07 4.97e-07 8.99e-08 3.48e-07 1.1e-07 1.64e-07 5.2e-07 9.91e-08 3.66e-07 2.26e-07 5.93e-07 3.36e-07 7.02e-07 1.1e-07 1.5e-07 2.08e-07 1.85e-07 3.79e-07 1.56e-07 8.11e-08 1.8e-07 3.13e-07 3.45e-07 1.29e-07 7.01e-07 2.46e-07 2.22e-07 2.13e-07 3.27e-07 4.3e-07 2.73e-07 6.58e-08 5.17e-08 1.39e-07 2.85e-07 6.85e-08 1.01e-07 6e-08 4.04e-08 5.96e-08 4.49e-08 5.29e-07 2.94e-08 1.54e-08 9.15e-08 1.37e-08 9.68e-08 0.0 4.59e-08