Genes within 1Mb (chr1:45860554:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 369391 eQTL 1.88e-20 -0.137 0.0145 0.0 0.0 0.371
ENSG00000079277 MKNK1 -756289 eQTL 1.07e-02 -0.0324 0.0127 0.0 0.0 0.371
ENSG00000086015 MAST2 73567 eQTL 3.37e-08 0.11 0.0197 0.0 0.0 0.371
ENSG00000117461 PIK3R3 -272482 eQTL 1.27e-32 0.235 0.019 0.0 0.0 0.371
ENSG00000117481 NSUN4 -479623 eQTL 4.31e-03 -0.0705 0.0246 0.0 0.0 0.371
ENSG00000123472 ATPAF1 -813313 eQTL 7.28e-04 -0.0665 0.0196 0.0 0.0 0.371
ENSG00000142961 MOB3C -756337 eQTL 1.14e-03 -0.0622 0.0191 0.0 0.0 0.371
ENSG00000159588 CCDC17 236497 eQTL 5.28e-15 0.111 0.014 0.0 0.0 0.371
ENSG00000159592 GPBP1L1 172441 eQTL 1.29e-02 0.027 0.0108 0.0 0.0 0.371
ENSG00000159596 TMEM69 172373 eQTL 3.32e-10 0.139 0.0219 0.0 0.0 0.371
ENSG00000159658 EFCAB14 -858560 pQTL 6.98e-04 -0.0548 0.0161 0.00151 0.00115 0.365
ENSG00000162415 ZSWIM5 554345 eQTL 3.76e-02 0.0443 0.0213 0.0 0.0 0.371
ENSG00000197429 IPP 109904 eQTL 1.29e-04 0.0787 0.0205 0.00397 0.00348 0.371
ENSG00000225447 RPS15AP10 214357 eQTL 4.87e-09 -0.197 0.0333 0.0 0.0 0.371
ENSG00000230896 AL604028.1 163479 eQTL 3.06e-02 0.083 0.0383 0.0 0.0 0.371
ENSG00000234329 AL604028.2 208728 eQTL 2.16e-26 -0.26 0.0238 0.0 0.0 0.371
ENSG00000280670 CCDC163 360475 eQTL 1.74e-05 -0.161 0.0374 0.0 0.0 0.371


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 369391 1.27e-06 1.5e-06 3.03e-07 1.21e-06 3.6e-07 6.42e-07 1.5e-06 3.31e-07 1.4e-06 4.78e-07 2.04e-06 6.31e-07 2.5e-06 3.31e-07 5.17e-07 9.2e-07 8.25e-07 6.94e-07 8.15e-07 6.9e-07 8.02e-07 1.8e-06 9.73e-07 6.28e-07 2.41e-06 6.01e-07 8.22e-07 8.92e-07 1.47e-06 1.25e-06 8.22e-07 1.57e-07 2.17e-07 5.18e-07 5.92e-07 4.81e-07 5.61e-07 2.15e-07 3.73e-07 2.65e-07 1.85e-07 2.22e-06 1.38e-07 6.48e-08 1.74e-07 9.94e-08 2.38e-07 8.81e-08 1.25e-07
ENSG00000079277 MKNK1 -756289 3.27e-07 2.56e-07 5.82e-08 2.57e-07 1.07e-07 1.26e-07 2.74e-07 5.89e-08 1.85e-07 1.03e-07 2.38e-07 1.23e-07 2.94e-07 8.42e-08 6.12e-08 9.6e-08 4.63e-08 1.91e-07 7.76e-08 5.61e-08 1.33e-07 1.9e-07 1.86e-07 3.59e-08 2.99e-07 1.56e-07 1.2e-07 1.47e-07 1.4e-07 1.38e-07 1.43e-07 4.85e-08 4.37e-08 9.81e-08 5.24e-08 3.57e-08 5.76e-08 7.51e-08 5.95e-08 6.79e-08 5.8e-08 2.8e-07 3.13e-08 1.54e-08 3.48e-08 1.55e-08 7.92e-08 2.07e-09 4.52e-08
ENSG00000086015 MAST2 73567 1.03e-05 1.33e-05 1.33e-06 6.46e-06 2.45e-06 4.75e-06 1.21e-05 1.76e-06 1.05e-05 4.92e-06 1.39e-05 5.55e-06 1.85e-05 4.33e-06 2.52e-06 6.38e-06 4.94e-06 7.72e-06 3.05e-06 2.85e-06 5.11e-06 1.04e-05 9.78e-06 2.9e-06 2.07e-05 4.03e-06 4.92e-06 3.97e-06 1.16e-05 9.87e-06 6.76e-06 7.86e-07 1.14e-06 2.86e-06 4.55e-06 2.19e-06 1.71e-06 1.89e-06 1.82e-06 1e-06 7.78e-07 1.68e-05 1.49e-06 1.52e-07 7.66e-07 1.48e-06 8.9e-07 6.66e-07 6.01e-07
ENSG00000117461 PIK3R3 -272482 2.38e-06 3.17e-06 2.74e-07 2.07e-06 4.58e-07 7.3e-07 1.8e-06 4.22e-07 1.83e-06 8.27e-07 2.48e-06 1.45e-06 3.27e-06 1.43e-06 4.99e-07 1.19e-06 9.46e-07 1.72e-06 9.64e-07 7.37e-07 1.07e-06 3.01e-06 2.22e-06 8.29e-07 4.08e-06 1.3e-06 1.1e-06 1.45e-06 1.94e-06 1.81e-06 1.89e-06 2.62e-07 3.61e-07 6.25e-07 9.16e-07 6.76e-07 7.35e-07 3.71e-07 6.22e-07 2.17e-07 3.06e-07 4.17e-06 4.58e-07 1.74e-07 3.75e-07 3.08e-07 3.69e-07 1.27e-07 2.86e-07
ENSG00000123472 ATPAF1 -813313 3.07e-07 1.92e-07 5.03e-08 2.43e-07 1.02e-07 1.03e-07 2.24e-07 5.68e-08 1.54e-07 8.53e-08 1.86e-07 1.15e-07 2.38e-07 8.44e-08 5.43e-08 8.08e-08 4.18e-08 1.72e-07 7.36e-08 5.46e-08 1.27e-07 1.65e-07 1.69e-07 3.4e-08 2.37e-07 1.31e-07 1.17e-07 1.17e-07 1.37e-07 1.1e-07 1.26e-07 3.68e-08 3.38e-08 9.3e-08 3.51e-08 3.11e-08 5.1e-08 8.2e-08 6.49e-08 5.56e-08 5.37e-08 2.5e-07 3.55e-08 7.24e-09 3.29e-08 1.8e-08 9.29e-08 1.96e-09 4.55e-08
ENSG00000132780 \N 276708 2.28e-06 3.14e-06 2.54e-07 1.83e-06 4.37e-07 8.08e-07 1.82e-06 4.45e-07 1.81e-06 7.36e-07 2.5e-06 1.39e-06 3.51e-06 1.36e-06 4.59e-07 1.17e-06 9.83e-07 1.57e-06 8.58e-07 7.26e-07 9.29e-07 2.9e-06 2.12e-06 7.85e-07 4.02e-06 1.23e-06 1.12e-06 1.46e-06 1.89e-06 1.67e-06 1.81e-06 2.31e-07 3.55e-07 5.85e-07 9.09e-07 5.92e-07 7.29e-07 3.81e-07 5.99e-07 2.15e-07 3.04e-07 3.87e-06 4.37e-07 1.66e-07 3.83e-07 3.02e-07 3.64e-07 1.05e-07 2.61e-07
ENSG00000142961 MOB3C -756337 3.27e-07 2.56e-07 5.82e-08 2.57e-07 1.07e-07 1.26e-07 2.74e-07 5.89e-08 1.85e-07 1.03e-07 2.38e-07 1.23e-07 2.94e-07 8.42e-08 6.12e-08 9.6e-08 4.63e-08 1.91e-07 7.76e-08 6.03e-08 1.33e-07 1.9e-07 1.86e-07 3.59e-08 2.99e-07 1.56e-07 1.2e-07 1.47e-07 1.4e-07 1.38e-07 1.43e-07 4.85e-08 4.37e-08 9.81e-08 5.24e-08 3.57e-08 5.76e-08 7.51e-08 5.95e-08 6.79e-08 5.8e-08 2.8e-07 3.13e-08 1.54e-08 3.48e-08 1.55e-08 7.92e-08 2.07e-09 4.52e-08
ENSG00000159588 CCDC17 236497 3.59e-06 4.63e-06 3.32e-07 1.99e-06 6.03e-07 9.7e-07 2.56e-06 6.3e-07 2.51e-06 1.19e-06 3.52e-06 1.44e-06 5.39e-06 1.33e-06 9.17e-07 1.84e-06 1.45e-06 2.19e-06 1.53e-06 1.27e-06 1.39e-06 3.49e-06 3.3e-06 9.59e-07 4.81e-06 1.21e-06 1.35e-06 1.77e-06 3.17e-06 2.57e-06 1.98e-06 2.35e-07 4.71e-07 1.1e-06 1.54e-06 9.21e-07 7.94e-07 4.58e-07 1.07e-06 3.76e-07 3.55e-07 5.33e-06 6.37e-07 1.99e-07 3.6e-07 3.21e-07 6.08e-07 2.52e-07 2.41e-07
ENSG00000159596 TMEM69 172373 4.65e-06 6.26e-06 7.66e-07 3.08e-06 1.32e-06 1.56e-06 5.56e-06 1.01e-06 4.91e-06 2.43e-06 6.14e-06 3.56e-06 7.73e-06 1.89e-06 1.41e-06 3.42e-06 1.98e-06 3.55e-06 1.55e-06 9.69e-07 3.04e-06 4.75e-06 4.52e-06 1.87e-06 9.11e-06 1.95e-06 2.66e-06 1.82e-06 4.41e-06 4.39e-06 2.64e-06 4.9e-07 8.14e-07 1.8e-06 2.24e-06 8.53e-07 9.11e-07 4.94e-07 1.07e-06 4.16e-07 2.11e-07 8.36e-06 3.65e-07 1.8e-07 4.18e-07 3.23e-07 6.48e-07 2.02e-07 1.92e-07
ENSG00000159658 EFCAB14 -858560 2.91e-07 1.67e-07 4.91e-08 2.26e-07 1.03e-07 7.75e-08 1.99e-07 5.85e-08 1.5e-07 6.75e-08 1.66e-07 1.05e-07 2.05e-07 8.07e-08 5.82e-08 7.89e-08 4.18e-08 1.56e-07 7.16e-08 4.95e-08 1.26e-07 1.42e-07 1.64e-07 2.83e-08 2.09e-07 1.26e-07 1.13e-07 1.12e-07 1.31e-07 1.07e-07 1.21e-07 3.6e-08 3.13e-08 8.89e-08 2.97e-08 2.85e-08 3.7e-08 9.17e-08 6.41e-08 4.24e-08 5.45e-08 1.64e-07 4.7e-08 1.07e-08 3.2e-08 1.89e-08 1.15e-07 1.92e-09 4.67e-08
ENSG00000162415 ZSWIM5 554345 8.35e-07 8.34e-07 8.67e-08 4.25e-07 9.33e-08 3.32e-07 6.06e-07 1.38e-07 4.43e-07 2.34e-07 9.46e-07 3.3e-07 9.37e-07 1.56e-07 2.15e-07 2.23e-07 2.53e-07 3.74e-07 2.57e-07 1.43e-07 2.51e-07 4.38e-07 4.12e-07 1.25e-07 1.14e-06 2.6e-07 2.52e-07 2.74e-07 4.22e-07 5.99e-07 3.68e-07 6.13e-08 5.6e-08 1.16e-07 3.05e-07 1.18e-07 8.6e-08 8.04e-08 6.01e-08 2.59e-08 3.27e-08 9.5e-07 4.47e-08 1.62e-08 1.15e-07 1.75e-08 7.89e-08 3.3e-09 6.46e-08
ENSG00000197429 IPP 109904 7.6e-06 9.82e-06 8.27e-07 4.31e-06 1.83e-06 3.82e-06 9.57e-06 1.22e-06 7.35e-06 4.1e-06 1.06e-05 3.72e-06 1.24e-05 3.85e-06 1.3e-06 5.06e-06 3.71e-06 4.19e-06 2.58e-06 1.71e-06 3.57e-06 7.89e-06 6.94e-06 1.86e-06 1.34e-05 2.77e-06 3.58e-06 2.43e-06 7.5e-06 7.71e-06 4.69e-06 4.15e-07 7.92e-07 2.2e-06 2.89e-06 1.34e-06 1.11e-06 6.96e-07 1.25e-06 7.43e-07 4.57e-07 1.28e-05 1.03e-06 1.68e-07 7.75e-07 1.1e-06 1.15e-06 5.83e-07 4.23e-07
ENSG00000225447 RPS15AP10 214357 4.12e-06 4.82e-06 4.85e-07 2.44e-06 7.94e-07 1.35e-06 2.91e-06 8.07e-07 3.4e-06 1.65e-06 4.16e-06 1.84e-06 6.51e-06 2.15e-06 8.74e-07 2.06e-06 1.55e-06 2.07e-06 1.39e-06 1.3e-06 1.99e-06 4.27e-06 3.49e-06 1.17e-06 5.59e-06 1.21e-06 1.6e-06 1.42e-06 3.85e-06 3.32e-06 1.96e-06 3.42e-07 5.85e-07 1.23e-06 1.75e-06 1.01e-06 9.23e-07 3.79e-07 1.18e-06 3.63e-07 3.03e-07 5.59e-06 4.81e-07 1.81e-07 2.91e-07 3.14e-07 8.02e-07 2.31e-07 2.02e-07
ENSG00000234329 AL604028.2 208728 4.24e-06 5.09e-06 5.11e-07 2.43e-06 8.74e-07 1.39e-06 3.08e-06 8.73e-07 3.65e-06 1.63e-06 4.38e-06 2.02e-06 6.77e-06 2.43e-06 9.22e-07 2.21e-06 1.61e-06 2.3e-06 1.36e-06 1.17e-06 1.9e-06 4.21e-06 3.39e-06 1.24e-06 6.16e-06 1.32e-06 1.65e-06 1.41e-06 4.17e-06 3.38e-06 2.25e-06 3.27e-07 6.11e-07 1.24e-06 1.79e-06 9.72e-07 9.08e-07 4.65e-07 1.33e-06 3.46e-07 2.74e-07 5.98e-06 3.77e-07 1.89e-07 3.68e-07 3.67e-07 8.09e-07 2.22e-07 2.05e-07
ENSG00000269956 \N -678142 4.37e-07 4.24e-07 6.55e-08 3.58e-07 1.05e-07 1.71e-07 3.7e-07 7.52e-08 2.12e-07 1.28e-07 3.66e-07 1.57e-07 4.34e-07 1.01e-07 8.45e-08 1.14e-07 7.3e-08 2.66e-07 1.13e-07 8.87e-08 1.61e-07 2.3e-07 2.48e-07 3.83e-08 4.54e-07 1.94e-07 1.33e-07 1.69e-07 2.03e-07 2.01e-07 1.93e-07 5.22e-08 4.87e-08 1.01e-07 1.16e-07 5.14e-08 7.63e-08 5.71e-08 4.9e-08 8.03e-08 6.14e-08 4.42e-07 3.19e-08 1.73e-08 5.32e-08 6.98e-09 8.21e-08 0.0 5.61e-08
ENSG00000280670 CCDC163 360475 1.27e-06 1.84e-06 3.27e-07 1.27e-06 3.5e-07 6.63e-07 1.47e-06 3.57e-07 1.5e-06 5.63e-07 2e-06 6.58e-07 2.55e-06 3.61e-07 5.4e-07 9.27e-07 9.33e-07 7.36e-07 7.7e-07 6.49e-07 7.79e-07 1.91e-06 1.09e-06 6.37e-07 2.35e-06 6.73e-07 8.73e-07 9.25e-07 1.63e-06 1.2e-06 7.84e-07 1.73e-07 2e-07 5.82e-07 5.2e-07 4.4e-07 6.25e-07 2.24e-07 3.74e-07 3.12e-07 2.36e-07 2.43e-06 1.66e-07 6.55e-08 1.54e-07 1.12e-07 2.27e-07 8.37e-08 1.46e-07