Genes within 1Mb (chr1:45858493:T:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 367330 eQTL 2.78e-20 -0.137 0.0145 0.0 0.0 0.37
ENSG00000079277 MKNK1 -758350 eQTL 8.21e-03 -0.0335 0.0127 0.0 0.0 0.37
ENSG00000086015 MAST2 71506 eQTL 2.72e-08 0.11 0.0197 0.0 0.0 0.37
ENSG00000117461 PIK3R3 -274543 eQTL 3.53e-32 0.234 0.0191 0.0 0.0 0.37
ENSG00000117481 NSUN4 -481684 eQTL 3.92e-03 -0.0713 0.0246 0.0 0.0 0.37
ENSG00000123472 ATPAF1 -815374 eQTL 7.83e-04 -0.0661 0.0196 0.0 0.0 0.37
ENSG00000126088 UROD 847543 pQTL 4.00e-02 -0.0299 0.0146 0.0 0.0 0.363
ENSG00000142961 MOB3C -758398 eQTL 1.15e-03 -0.0622 0.0191 0.0 0.0 0.37
ENSG00000159588 CCDC17 234436 eQTL 5.72e-15 0.111 0.014 0.0 0.0 0.37
ENSG00000159592 GPBP1L1 170380 eQTL 1.25e-02 0.0271 0.0108 0.0 0.0 0.37
ENSG00000159596 TMEM69 170312 eQTL 3.10e-10 0.139 0.0219 0.0 0.0 0.37
ENSG00000159658 EFCAB14 -860621 pQTL 8.32e-04 -0.0542 0.0162 0.00139 0.001 0.363
ENSG00000162415 ZSWIM5 552284 eQTL 3.91e-02 0.044 0.0213 0.0 0.0 0.37
ENSG00000197429 IPP 107843 eQTL 1.38e-04 0.0784 0.0205 0.00376 0.00326 0.37
ENSG00000225447 RPS15AP10 212296 eQTL 2.66e-09 -0.2 0.0334 0.0 0.0 0.37
ENSG00000230896 AL604028.1 161418 eQTL 3.52e-02 0.0809 0.0384 0.0 0.0 0.37
ENSG00000234329 AL604028.2 206667 eQTL 3.37e-26 -0.26 0.0238 0.0 0.0 0.37
ENSG00000280670 CCDC163 358414 eQTL 1.49e-05 -0.163 0.0374 0.0 0.0 0.37


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 367330 1.17e-06 5.6e-07 9.16e-08 4.14e-07 1.02e-07 2.42e-07 5.54e-07 7.12e-08 3.03e-07 2.06e-07 4.97e-07 2.33e-07 8.34e-07 1.52e-07 4.3e-07 1.76e-07 1.01e-07 3.3e-07 1.89e-07 9.01e-08 1.68e-07 3.1e-07 2.77e-07 1.25e-07 7.94e-07 1.86e-07 3.04e-07 1.61e-07 3.27e-07 2.52e-07 2.11e-07 7.59e-08 4.98e-08 2.72e-07 3.7e-07 6.52e-08 8.6e-08 7.92e-08 6.63e-08 8.66e-09 3.5e-08 3.06e-07 6.65e-08 1.79e-08 1.67e-07 1.5e-08 9.98e-08 4.47e-08 4.82e-08
ENSG00000079277 MKNK1 -758350 2.67e-07 1.1e-07 3.59e-08 1.86e-07 9.91e-08 9.71e-08 1.38e-07 5.35e-08 1.41e-07 4.38e-08 1.6e-07 8.03e-08 1.41e-07 6.38e-08 5.91e-08 7.89e-08 4.94e-08 1.14e-07 5.36e-08 4.03e-08 1.04e-07 1.28e-07 1.3e-07 4.13e-08 1.31e-07 1.13e-07 1.12e-07 8.7e-08 1.02e-07 1.11e-07 9.58e-08 3.71e-08 2.91e-08 8.11e-08 8.74e-08 3.97e-08 5.31e-08 9.25e-08 7.2e-08 3.87e-08 4.51e-08 1.36e-07 5.21e-08 2.1e-08 5.19e-08 1.83e-08 1.25e-07 3.8e-09 4.77e-08
ENSG00000086015 MAST2 71506 1.37e-05 9.32e-06 8.44e-07 4.4e-06 1.63e-06 3.97e-06 9.62e-06 1.11e-06 6.04e-06 4.04e-06 1.04e-05 3.3e-06 1.13e-05 3.47e-06 1.55e-06 6.1e-06 3.28e-06 3.8e-06 1.63e-06 1.39e-06 3.16e-06 7.71e-06 5.85e-06 2e-06 1.29e-05 2.21e-06 4.54e-06 1.78e-06 7.52e-06 6.51e-06 4.35e-06 5.12e-07 6.52e-07 2.38e-06 2.88e-06 9.61e-07 9.28e-07 4.59e-07 9.67e-07 8.18e-07 4.16e-07 1.16e-05 1.39e-06 1.58e-07 7.99e-07 9.91e-07 1.07e-06 6.6e-07 4.54e-07
ENSG00000117461 PIK3R3 -274543 1.27e-06 1.01e-06 2.62e-07 1.16e-06 9.26e-08 4.76e-07 1.18e-06 1.76e-07 1.09e-06 3.28e-07 1.35e-06 5.51e-07 1.75e-06 2.83e-07 4.95e-07 5.69e-07 6.44e-07 5.27e-07 3.95e-07 4.12e-07 2.57e-07 9.14e-07 5.81e-07 4.87e-07 1.97e-06 2.64e-07 7.66e-07 3.24e-07 9.39e-07 8.5e-07 5.1e-07 4.97e-08 4.57e-08 6.89e-07 5.69e-07 2.54e-07 3.64e-07 7.75e-08 1.71e-07 2.93e-07 1.16e-07 1.08e-06 3.9e-07 1.23e-08 1.52e-07 1.28e-07 1.83e-07 7e-08 5.47e-08
ENSG00000123472 ATPAF1 -815374 2.64e-07 1.01e-07 3.62e-08 1.82e-07 1.02e-07 9.57e-08 1.41e-07 5.21e-08 1.42e-07 4.24e-08 1.63e-07 8.02e-08 1.3e-07 6.21e-08 6.17e-08 8.01e-08 4.94e-08 1.1e-07 5.19e-08 3.88e-08 1.05e-07 1.3e-07 1.29e-07 4.54e-08 1.31e-07 1.13e-07 1.12e-07 8.71e-08 9.88e-08 1.1e-07 9.75e-08 3.84e-08 2.74e-08 8.34e-08 8.98e-08 4.02e-08 5.08e-08 9.26e-08 7.52e-08 3.37e-08 4.6e-08 1.37e-07 5.22e-08 2.79e-08 5.75e-08 1.67e-08 1.26e-07 3.89e-09 4.85e-08
ENSG00000132780 \N 274647 1.27e-06 1.01e-06 2.62e-07 1.16e-06 9.26e-08 4.81e-07 1.16e-06 1.76e-07 1.09e-06 3.28e-07 1.35e-06 5.51e-07 1.75e-06 2.83e-07 4.95e-07 5.69e-07 6.29e-07 5.27e-07 3.95e-07 3.99e-07 2.57e-07 9.14e-07 5.81e-07 4.87e-07 1.97e-06 2.64e-07 7.66e-07 3.24e-07 9.39e-07 8.5e-07 4.9e-07 4.97e-08 5.86e-08 6.89e-07 5.69e-07 2.54e-07 3.64e-07 7.75e-08 1.71e-07 2.93e-07 1.16e-07 1.08e-06 3.9e-07 1.23e-08 1.52e-07 1.28e-07 1.83e-07 7e-08 5.47e-08
ENSG00000142961 MOB3C -758398 2.67e-07 1.1e-07 3.59e-08 1.86e-07 9.91e-08 9.71e-08 1.38e-07 5.35e-08 1.41e-07 4.38e-08 1.6e-07 8.03e-08 1.41e-07 6.38e-08 5.91e-08 7.89e-08 4.94e-08 1.14e-07 5.36e-08 4.03e-08 1.04e-07 1.28e-07 1.3e-07 4.13e-08 1.31e-07 1.13e-07 1.12e-07 8.7e-08 1.02e-07 1.11e-07 9.58e-08 3.71e-08 2.91e-08 8.11e-08 8.74e-08 3.97e-08 5.31e-08 9.25e-08 7.2e-08 3.87e-08 4.51e-08 1.36e-07 5.21e-08 2.1e-08 5.19e-08 1.83e-08 1.25e-07 3.8e-09 4.77e-08
ENSG00000159588 CCDC17 234436 1.97e-06 1.36e-06 3.58e-07 1.22e-06 1.11e-07 6.28e-07 1.48e-06 2.98e-07 1.46e-06 4.66e-07 1.87e-06 5.98e-07 2.46e-06 2.95e-07 3.28e-07 8.79e-07 7.74e-07 6.45e-07 7.52e-07 6.84e-07 4.48e-07 1.6e-06 9.28e-07 6.4e-07 2.42e-06 2.99e-07 1.06e-06 4.96e-07 1.48e-06 1.11e-06 6.96e-07 2.38e-07 1.34e-07 5.59e-07 7.35e-07 3.94e-07 5.15e-07 1.27e-07 3.74e-07 1.86e-07 2.17e-07 1.49e-06 5.1e-07 3.38e-08 3e-07 2.32e-07 2.14e-07 9.26e-08 8.44e-08
ENSG00000159596 TMEM69 170312 4.51e-06 3.14e-06 2.88e-07 1.91e-06 3.36e-07 7.88e-07 1.78e-06 4.2e-07 1.7e-06 7.3e-07 2.43e-06 1.25e-06 3.5e-06 1.21e-06 9.11e-07 1.18e-06 1.14e-06 1.35e-06 5.76e-07 6.51e-07 6.02e-07 2.32e-06 1.71e-06 9.14e-07 3.75e-06 8.03e-07 1.49e-06 8.87e-07 1.89e-06 1.39e-06 1.23e-06 3.04e-07 2.64e-07 1.22e-06 1.63e-06 4.75e-07 7.71e-07 2.38e-07 6.01e-07 3.79e-07 2.79e-07 2.75e-06 3.78e-07 1.3e-07 3.12e-07 2.94e-07 4.03e-07 2.18e-07 2.8e-07
ENSG00000159658 EFCAB14 -860621 2.61e-07 1.06e-07 3.69e-08 1.82e-07 1.02e-07 9.3e-08 1.42e-07 5.21e-08 1.37e-07 4.24e-08 1.63e-07 8.02e-08 1.26e-07 6.21e-08 6e-08 8.01e-08 5.1e-08 1.1e-07 5.19e-08 3.89e-08 1.06e-07 1.33e-07 1.29e-07 4.53e-08 1.29e-07 1.13e-07 1.12e-07 8.71e-08 9.97e-08 1.1e-07 9.75e-08 3.89e-08 2.74e-08 8.55e-08 8.93e-08 3.9e-08 5.02e-08 9.2e-08 7.63e-08 3.54e-08 4.19e-08 1.39e-07 5.08e-08 1.7e-08 5.87e-08 1.69e-08 1.27e-07 3.95e-09 4.74e-08
ENSG00000162415 ZSWIM5 552284 3.14e-07 1.35e-07 5.03e-08 2.26e-07 8.92e-08 8.21e-08 1.81e-07 5.2e-08 1.45e-07 5.67e-08 1.52e-07 9e-08 2.05e-07 8.13e-08 7.98e-08 7.49e-08 3.93e-08 1.33e-07 7.12e-08 4.3e-08 1.22e-07 1.26e-07 1.45e-07 3.17e-08 1.68e-07 1.14e-07 1.12e-07 9.65e-08 1.22e-07 1.03e-07 9.92e-08 3.08e-08 3.66e-08 9.81e-08 4.04e-08 2.99e-08 4.84e-08 9.61e-08 6.28e-08 6.55e-08 5.44e-08 1.36e-07 2.89e-08 7.78e-09 3.87e-08 1.19e-08 1.21e-07 0.0 4.94e-08
ENSG00000197429 IPP 107843 8.29e-06 5.82e-06 8.29e-07 3.45e-06 6.82e-07 1.55e-06 5.49e-06 9.98e-07 4.93e-06 2.41e-06 5.75e-06 3.22e-06 7.1e-06 2.46e-06 1.43e-06 3.87e-06 2.06e-06 2.94e-06 1.35e-06 1.05e-06 2.49e-06 4.87e-06 3.78e-06 1.71e-06 8.26e-06 1.3e-06 2.32e-06 1.69e-06 4.3e-06 3.44e-06 2.73e-06 5.26e-07 5.68e-07 1.85e-06 1.96e-06 9.57e-07 7.7e-07 4.57e-07 1.27e-06 4.07e-07 1.67e-07 5.65e-06 6.89e-07 1.81e-07 4.39e-07 6.57e-07 7.28e-07 2.4e-07 1.77e-07
ENSG00000225447 RPS15AP10 212296 2.77e-06 2.14e-06 2.13e-07 1.54e-06 2.05e-07 6.91e-07 1.21e-06 3.49e-07 1.68e-06 5.89e-07 2.06e-06 7.37e-07 2.72e-06 4.13e-07 4.99e-07 9.67e-07 8.89e-07 8.55e-07 8.15e-07 6.26e-07 7.37e-07 1.87e-06 8.95e-07 5.41e-07 2.41e-06 4.36e-07 1.04e-06 6.89e-07 1.65e-06 1.34e-06 8.57e-07 2.63e-07 2.31e-07 6.84e-07 9e-07 4.75e-07 5.93e-07 1.5e-07 4.52e-07 2.15e-07 2.85e-07 1.65e-06 5.89e-07 4.23e-08 3.81e-07 3.26e-07 2.09e-07 1.45e-07 1.35e-07
ENSG00000234329 AL604028.2 206667 3.2e-06 2.35e-06 2.74e-07 1.62e-06 2.31e-07 7.28e-07 1.25e-06 3.49e-07 1.74e-06 6.36e-07 1.98e-06 7.79e-07 2.58e-06 4.99e-07 5.41e-07 9.62e-07 9.05e-07 9.53e-07 7.81e-07 5.23e-07 7.59e-07 1.89e-06 1.03e-06 6.29e-07 2.49e-06 4.31e-07 1.14e-06 7.2e-07 1.69e-06 1.26e-06 8.27e-07 2.56e-07 2.29e-07 7.63e-07 9.46e-07 4.52e-07 6.41e-07 1.56e-07 4.78e-07 1.68e-07 3.02e-07 1.7e-06 5.97e-07 6.41e-08 3.89e-07 3.22e-07 2.38e-07 1.71e-07 1.68e-07
ENSG00000269956 \N -680203 2.74e-07 1.16e-07 3.71e-08 1.9e-07 9.65e-08 9.65e-08 1.44e-07 5.49e-08 1.4e-07 4.57e-08 1.56e-07 7.75e-08 1.45e-07 6.56e-08 5.72e-08 7.26e-08 4.48e-08 1.14e-07 5.82e-08 4.21e-08 1.05e-07 1.26e-07 1.26e-07 3.68e-08 1.32e-07 1.15e-07 1.06e-07 9.15e-08 1.05e-07 1.12e-07 9.58e-08 3.98e-08 3.09e-08 9.3e-08 6.67e-08 3.93e-08 5.8e-08 9.56e-08 6.54e-08 4.55e-08 3.59e-08 1.37e-07 4.7e-08 1.38e-08 3.84e-08 1.84e-08 1.23e-07 1.89e-09 5.04e-08
ENSG00000280670 CCDC163 358414 1.26e-06 6.07e-07 1.03e-07 3.71e-07 1.01e-07 2.67e-07 5.76e-07 7.52e-08 3.51e-07 2.16e-07 5.93e-07 2.8e-07 9.23e-07 1.59e-07 4.6e-07 1.96e-07 1.35e-07 3.44e-07 2.12e-07 1.17e-07 1.91e-07 3.34e-07 3.02e-07 1.44e-07 8.99e-07 1.94e-07 3.37e-07 1.7e-07 3.58e-07 2.97e-07 2.43e-07 7.5e-08 4.96e-08 2.84e-07 3.57e-07 6.94e-08 1.11e-07 7.68e-08 6.41e-08 1.8e-08 4.36e-08 3.55e-07 5.94e-08 1.84e-08 1.94e-07 2.64e-08 8.01e-08 5.86e-08 5.58e-08