Genes within 1Mb (chr1:45850556:GT:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 359393 eQTL 1.88e-20 -0.137 0.0145 0.0 0.0 0.371
ENSG00000079277 MKNK1 -766287 eQTL 1.07e-02 -0.0324 0.0127 0.0 0.0 0.371
ENSG00000086015 MAST2 63569 eQTL 3.37e-08 0.11 0.0197 0.0 0.0 0.371
ENSG00000117461 PIK3R3 -282480 eQTL 1.27e-32 0.235 0.019 0.0 0.0 0.371
ENSG00000117481 NSUN4 -489621 eQTL 4.31e-03 -0.0705 0.0246 0.0 0.0 0.371
ENSG00000123472 ATPAF1 -823311 eQTL 7.28e-04 -0.0665 0.0196 0.0 0.0 0.371
ENSG00000142961 MOB3C -766335 eQTL 1.14e-03 -0.0622 0.0191 0.0 0.0 0.371
ENSG00000159588 CCDC17 226499 eQTL 5.28e-15 0.111 0.014 0.0 0.0 0.371
ENSG00000159592 GPBP1L1 162443 eQTL 1.29e-02 0.027 0.0108 0.0 0.0 0.371
ENSG00000159596 TMEM69 162375 eQTL 3.32e-10 0.139 0.0219 0.0 0.0 0.371
ENSG00000159658 EFCAB14 -868558 pQTL 6.98e-04 -0.0548 0.0161 0.00151 0.00115 0.365
ENSG00000162415 ZSWIM5 544347 eQTL 3.76e-02 0.0443 0.0213 0.0 0.0 0.371
ENSG00000197429 IPP 99906 eQTL 1.29e-04 0.0787 0.0205 0.00397 0.00346 0.371
ENSG00000225447 RPS15AP10 204359 eQTL 4.87e-09 -0.197 0.0333 0.0 0.0 0.371
ENSG00000230896 AL604028.1 153481 eQTL 3.06e-02 0.083 0.0383 0.0 0.0 0.371
ENSG00000234329 AL604028.2 198730 eQTL 2.16e-26 -0.26 0.0238 0.0 0.0 0.371
ENSG00000280670 CCDC163 350477 eQTL 1.74e-05 -0.161 0.0374 0.0 0.0 0.371


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 359393 2.71e-06 5.79e-06 1.85e-06 3.42e-06 4.78e-07 7.53e-07 2.94e-06 4.02e-07 5.17e-06 1.2e-06 6.05e-06 1.95e-06 8.92e-06 1.99e-06 1.09e-06 2.02e-06 1.93e-06 2.89e-06 7.93e-07 1.32e-06 1.4e-06 4.14e-06 2.72e-06 6.81e-07 5.2e-06 1.13e-06 1.46e-06 1.85e-06 4.08e-06 3e-06 2.69e-06 3.03e-07 3.9e-07 1.42e-06 1.92e-06 9.01e-07 9.88e-07 3.9e-07 1.09e-06 2.3e-07 1.21e-07 8.29e-06 5.44e-07 1.99e-07 2.96e-07 9.32e-07 2.3e-07 3.77e-08 1.36e-07
ENSG00000079277 MKNK1 -766287 1.27e-06 1.19e-06 6.9e-07 1.32e-06 1.19e-07 3.41e-07 1.28e-06 8.86e-08 1.73e-06 3.05e-07 2.02e-06 5.76e-07 2.66e-06 5.76e-07 5.5e-07 7.13e-07 8.89e-07 5.47e-07 3.56e-07 1.32e-07 2.29e-07 1.72e-06 6.18e-07 1.03e-07 2.29e-06 2.42e-07 5.76e-07 5.63e-07 7.61e-07 1.2e-06 8.65e-07 4.61e-08 4.35e-08 5.45e-07 5.23e-07 3.32e-07 2.57e-07 5.36e-08 6.81e-08 7.65e-08 4.37e-08 2.17e-06 5.07e-08 1.85e-08 3.07e-08 2.14e-07 7e-08 2.02e-09 4.8e-08
ENSG00000086015 MAST2 63569 1.26e-05 2.73e-05 7.73e-06 8.75e-06 2.24e-06 4.26e-06 1.56e-05 1.85e-06 1.31e-05 5.36e-06 1.9e-05 7.07e-06 3.08e-05 5.5e-06 5.09e-06 7.43e-06 1.56e-05 1.17e-05 2.98e-06 2.8e-06 6.46e-06 1.22e-05 1.19e-05 3.3e-06 2.63e-05 4.49e-06 5.93e-06 4.08e-06 1.61e-05 1.19e-05 1.15e-05 1.09e-06 9.22e-07 3.24e-06 5.12e-06 2.8e-06 1.82e-06 1.95e-06 2.14e-06 8.87e-07 6.55e-07 3.61e-05 2.95e-06 2.69e-07 6.8e-07 2.28e-06 1.73e-06 6.9e-07 5.76e-07
ENSG00000117461 PIK3R3 -282480 4.26e-06 9.31e-06 2.59e-06 4.01e-06 6.82e-07 1.17e-06 5.64e-06 7.37e-07 4.66e-06 2.06e-06 8.97e-06 3.37e-06 1.15e-05 2.79e-06 1.52e-06 2.82e-06 3.87e-06 4e-06 1.49e-06 9.89e-07 2.95e-06 4.88e-06 3.47e-06 1.08e-06 8.52e-06 1.26e-06 2.25e-06 1.45e-06 4.73e-06 4.12e-06 4.13e-06 5.93e-07 5.96e-07 1.87e-06 2.09e-06 1.02e-06 1.08e-06 4.2e-07 1.05e-06 3.76e-07 2.92e-07 1.35e-05 1.13e-06 1.69e-07 3.49e-07 8.79e-07 5.64e-07 2.65e-07 2.44e-07
ENSG00000123472 ATPAF1 -823311 1.31e-06 9.82e-07 8.36e-07 1.26e-06 9.6e-08 2.95e-07 1.13e-06 7.65e-08 1.66e-06 3.04e-07 2.07e-06 5.75e-07 2.53e-06 4.11e-07 5.72e-07 6e-07 8.13e-07 5.54e-07 3.64e-07 8.86e-08 2.5e-07 1.45e-06 5.49e-07 6.52e-08 2.06e-06 2.32e-07 4.97e-07 4.98e-07 6.33e-07 1.07e-06 8.51e-07 3.78e-08 5.68e-08 4.04e-07 6.24e-07 2.56e-07 1.83e-07 6.66e-08 4.37e-08 6.31e-08 3.92e-08 1.95e-06 5.45e-08 1.71e-08 3.41e-08 1.46e-07 8.98e-08 1.92e-09 5.02e-08
ENSG00000132780 \N 266710 4.33e-06 9.59e-06 2.46e-06 4.16e-06 7.47e-07 1.35e-06 6.54e-06 8.47e-07 4.68e-06 2.35e-06 8.96e-06 3.28e-06 1.23e-05 3.18e-06 1.66e-06 3.26e-06 3.97e-06 4.03e-06 1.42e-06 9.64e-07 3.04e-06 5.26e-06 3.78e-06 1.17e-06 9.01e-06 1.22e-06 2.47e-06 1.79e-06 5.45e-06 4.26e-06 4.38e-06 5.26e-07 6.64e-07 1.52e-06 2.03e-06 1.16e-06 1.07e-06 4.75e-07 9.31e-07 4.34e-07 3.03e-07 1.48e-05 1.31e-06 1.84e-07 3.22e-07 9.38e-07 7.91e-07 2.24e-07 2.46e-07
ENSG00000142961 MOB3C -766335 1.27e-06 1.19e-06 6.9e-07 1.32e-06 1.19e-07 3.41e-07 1.28e-06 8.86e-08 1.73e-06 3.05e-07 2.02e-06 5.76e-07 2.66e-06 5.76e-07 5.5e-07 7.13e-07 8.89e-07 5.47e-07 3.56e-07 1.32e-07 2.29e-07 1.72e-06 6.18e-07 1.03e-07 2.29e-06 2.42e-07 5.76e-07 5.63e-07 7.61e-07 1.2e-06 8.65e-07 4.61e-08 4.35e-08 5.45e-07 5.23e-07 3.32e-07 2.57e-07 5.36e-08 6.81e-08 7.65e-08 4.37e-08 2.17e-06 5.07e-08 1.85e-08 3.07e-08 2.14e-07 7e-08 2.02e-09 4.8e-08
ENSG00000159588 CCDC17 226499 4.48e-06 1.13e-05 2.95e-06 4.82e-06 9.03e-07 1.74e-06 8.39e-06 9.62e-07 5.68e-06 2.88e-06 1.05e-05 2.97e-06 1.53e-05 3.82e-06 2.22e-06 3.81e-06 5.39e-06 3.81e-06 1.39e-06 1.25e-06 2.77e-06 6.58e-06 4.44e-06 1.8e-06 9.94e-06 1.67e-06 2.41e-06 1.77e-06 6.89e-06 5.02e-06 5.24e-06 4.16e-07 7.75e-07 1.59e-06 1.89e-06 1.22e-06 1.23e-06 4.58e-07 8.97e-07 3.82e-07 3.56e-07 1.85e-05 1.48e-06 1.64e-07 3.62e-07 1.48e-06 7.69e-07 2.62e-07 1.74e-07
ENSG00000159596 TMEM69 162375 5.61e-06 1.45e-05 4.26e-06 6.13e-06 1.62e-06 1.52e-06 9.75e-06 1.09e-06 7.82e-06 3.39e-06 1.36e-05 4.44e-06 2.16e-05 3.77e-06 3.17e-06 4.67e-06 8.2e-06 6.33e-06 1.49e-06 1.98e-06 3.57e-06 7.71e-06 5.44e-06 1.39e-06 1.31e-05 2.11e-06 2.89e-06 1.8e-06 9.12e-06 7.53e-06 7.59e-06 8.07e-07 5.47e-07 2.34e-06 2.59e-06 2.04e-06 1.61e-06 5.07e-07 1.34e-06 3.71e-07 1.67e-07 2.44e-05 2.21e-06 1.44e-07 5.95e-07 1.78e-06 1.03e-06 5.21e-07 3.43e-07
ENSG00000159658 EFCAB14 -868558 1.24e-06 9.53e-07 8.52e-07 1.32e-06 1.11e-07 2.46e-07 9.92e-07 7.12e-08 1.5e-06 2.8e-07 1.85e-06 5.39e-07 2.38e-06 3.36e-07 4.48e-07 5.29e-07 8.26e-07 5.53e-07 3.36e-07 7.84e-08 2.52e-07 1.3e-06 4.74e-07 4.81e-08 1.97e-06 2.07e-07 4.55e-07 4.77e-07 5.41e-07 1.01e-06 7.84e-07 3.99e-08 6.08e-08 3.49e-07 5.36e-07 1.85e-07 1.23e-07 7.92e-08 5.28e-08 5.45e-08 4.41e-08 1.62e-06 7.53e-08 1.99e-08 3.83e-08 1.19e-07 9.29e-08 1.89e-09 4.88e-08
ENSG00000162415 ZSWIM5 544347 1.27e-06 2.64e-06 1.17e-06 1.91e-06 3.51e-07 6.31e-07 1.31e-06 2.71e-07 2.13e-06 6.18e-07 2.48e-06 9.49e-07 3.92e-06 1.43e-06 9.5e-07 1.04e-06 1.18e-06 1.29e-06 8.34e-07 6.97e-07 8.07e-07 2.24e-06 1.03e-06 3.56e-07 2.57e-06 2.99e-07 9.89e-07 8.87e-07 1.63e-06 1.43e-06 2.03e-06 5.82e-08 1.82e-07 5.59e-07 9e-07 5.3e-07 7.46e-07 1.41e-07 3.33e-07 1.6e-08 5.04e-08 4.17e-06 4.36e-07 2.65e-08 1.15e-07 3.31e-07 1.17e-07 1.18e-08 5.71e-08
ENSG00000197429 IPP 99906 7.93e-06 2.03e-05 6.4e-06 7.13e-06 1.74e-06 3.4e-06 1.09e-05 1.25e-06 1e-05 4.62e-06 1.6e-05 5.55e-06 2.71e-05 4.11e-06 4.13e-06 6.38e-06 1.08e-05 8.13e-06 2.56e-06 2.76e-06 5.1e-06 9.54e-06 7.22e-06 2.02e-06 1.83e-05 3.04e-06 4.46e-06 2.82e-06 1.25e-05 7.98e-06 9.19e-06 1.07e-06 7.27e-07 2.82e-06 3.88e-06 2.51e-06 1.76e-06 1.74e-06 1.99e-06 6.39e-07 2.78e-07 2.84e-05 2.68e-06 2.1e-07 7.75e-07 2.04e-06 9.07e-07 6.12e-07 6.13e-07
ENSG00000225447 RPS15AP10 204359 4.82e-06 1.25e-05 3.15e-06 5.03e-06 1.12e-06 1.56e-06 9.06e-06 9.93e-07 6.16e-06 2.8e-06 1.21e-05 2.94e-06 1.76e-05 3.86e-06 2.45e-06 3.9e-06 6.49e-06 4.31e-06 1.48e-06 1.51e-06 2.66e-06 7.44e-06 4.82e-06 1.87e-06 1.14e-05 2.02e-06 2.34e-06 1.57e-06 7.21e-06 5.88e-06 5.8e-06 4.84e-07 7.91e-07 1.96e-06 1.99e-06 1.39e-06 1.35e-06 4.7e-07 9.34e-07 3.63e-07 2.88e-07 2.02e-05 1.57e-06 1.68e-07 3.7e-07 1.68e-06 7.44e-07 2.41e-07 2.56e-07
ENSG00000234329 AL604028.2 198730 5.08e-06 1.26e-05 3.3e-06 5.17e-06 1.14e-06 1.5e-06 9.22e-06 1.03e-06 6.4e-06 2.85e-06 1.23e-05 3.05e-06 1.8e-05 3.85e-06 2.55e-06 3.91e-06 6.5e-06 4.58e-06 1.45e-06 1.55e-06 2.85e-06 7.4e-06 4.84e-06 1.77e-06 1.16e-05 1.96e-06 2.22e-06 1.75e-06 7.52e-06 6.28e-06 5.94e-06 5.12e-07 7.51e-07 2.16e-06 2.12e-06 1.53e-06 1.43e-06 4.18e-07 1.12e-06 3.8e-07 2.88e-07 2.07e-05 1.57e-06 1.59e-07 4.03e-07 1.63e-06 7.75e-07 2.26e-07 3.03e-07
ENSG00000269956 \N -688140 1.29e-06 1.58e-06 6.4e-07 1.54e-06 2.14e-07 4.06e-07 1.61e-06 1.38e-07 1.76e-06 3.64e-07 1.89e-06 6.08e-07 2.79e-06 9.52e-07 4.85e-07 8.48e-07 9.81e-07 6.94e-07 5.31e-07 2.02e-07 3.35e-07 1.91e-06 7.79e-07 1.32e-07 2.32e-06 2.71e-07 6.88e-07 7.26e-07 1.04e-06 1.29e-06 7.49e-07 4.75e-08 5.3e-08 6.95e-07 5.64e-07 4.32e-07 3.96e-07 7.75e-08 8.43e-08 7.89e-08 5.45e-08 2.9e-06 1.41e-07 1.05e-08 3.61e-08 2.74e-07 9.26e-08 0.0 4.91e-08
ENSG00000280670 CCDC163 350477 2.82e-06 5.93e-06 1.9e-06 3.5e-06 4.74e-07 7.3e-07 3.15e-06 4.28e-07 5.2e-06 1.24e-06 6.14e-06 2.13e-06 9.33e-06 1.92e-06 1.04e-06 2.1e-06 2.36e-06 2.76e-06 9.61e-07 1.35e-06 1.56e-06 4.35e-06 2.58e-06 7.82e-07 5.39e-06 1.26e-06 1.48e-06 1.78e-06 4.19e-06 3.06e-06 2.56e-06 2.48e-07 3.99e-07 1.45e-06 1.94e-06 9.23e-07 9.14e-07 4.9e-07 1.17e-06 2.05e-07 1.79e-07 9.18e-06 6.31e-07 2.15e-07 3.07e-07 1.02e-06 2.6e-07 4.91e-08 1.69e-07