Genes within 1Mb (chr1:45830000:G:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 338837 eQTL 1.76e-17 -0.132 0.0152 0.0 0.0 0.312
ENSG00000079277 MKNK1 -786843 eQTL 4.96e-02 -0.026 0.0132 0.0 0.0 0.312
ENSG00000086015 MAST2 43013 eQTL 8.26e-25 0.209 0.0197 0.0 0.0 0.312
ENSG00000117448 AKR1A1 279457 eQTL 4.10e-02 -0.0244 0.0119 0.0 0.0 0.312
ENSG00000117461 PIK3R3 -303036 eQTL 9.02e-29 0.23 0.02 0.0 0.0 0.312
ENSG00000117480 FAAH -564317 eQTL 4.66e-02 0.0447 0.0224 0.0 0.0 0.312
ENSG00000123472 ATPAF1 -843867 eQTL 8.59e-03 -0.0539 0.0205 0.0 0.0 0.312
ENSG00000132763 MMACHC 329700 eQTL 3.64e-02 -0.0676 0.0323 0.0 0.0 0.312
ENSG00000142961 MOB3C -786891 eQTL 1.29e-04 -0.0762 0.0198 0.0016 0.0 0.312
ENSG00000159588 CCDC17 205943 eQTL 1.93e-02 0.0351 0.015 0.0 0.0 0.312
ENSG00000159592 GPBP1L1 141887 eQTL 1.49e-04 0.0428 0.0112 0.0 0.0 0.312
ENSG00000159596 TMEM69 141819 eQTL 7.48e-11 0.15 0.0227 0.0 0.0 0.312
ENSG00000159658 EFCAB14 -889114 pQTL 2.62e-03 -0.051 0.0169 0.0 0.0 0.307
ENSG00000159658 EFCAB14 -889114 eQTL 3.77e-02 -0.042 0.0202 0.0 0.0 0.312
ENSG00000197429 IPP 79350 eQTL 8.19e-03 0.0568 0.0214 0.0 0.0 0.312
ENSG00000225447 RPS15AP10 183803 eQTL 1.11e-13 -0.259 0.0344 0.0 0.0 0.312
ENSG00000234329 AL604028.2 178174 eQTL 2.21e-33 -0.305 0.0244 0.0 0.0 0.312
ENSG00000280670 CCDC163 329921 eQTL 3.72e-06 -0.181 0.0389 0.0 0.0 0.312
ENSG00000281912 LINC01144 526090 eQTL 2.16e-02 0.0818 0.0355 0.0 0.0 0.312


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 338837 1.89e-06 2.44e-06 2.43e-07 1.44e-06 3.79e-07 6.45e-07 1.25e-06 4.16e-07 1.7e-06 7.13e-07 1.9e-06 1.28e-06 2.68e-06 8.94e-07 3.86e-07 9.9e-07 1.11e-06 1.09e-06 7.29e-07 4.65e-07 7.41e-07 1.96e-06 1.38e-06 6.1e-07 2.65e-06 7.53e-07 1.12e-06 1.01e-06 1.69e-06 1.4e-06 7.66e-07 2.63e-07 2.67e-07 5.73e-07 7.37e-07 4.75e-07 6.91e-07 3.09e-07 4.12e-07 2.08e-07 2.83e-07 2.66e-06 3.75e-07 1.3e-07 3.17e-07 3.43e-07 2.28e-07 9.26e-08 1.98e-07
ENSG00000086015 MAST2 43013 1.11e-05 1.46e-05 2.32e-06 8.45e-06 2.35e-06 5.66e-06 1.56e-05 2.22e-06 1.25e-05 6.09e-06 1.75e-05 6.86e-06 2.28e-05 5.17e-06 3.75e-06 7.26e-06 6.79e-06 9.78e-06 2.99e-06 3.24e-06 6.79e-06 1.22e-05 1.21e-05 3.47e-06 2.06e-05 4.39e-06 7.14e-06 5.32e-06 1.37e-05 1.19e-05 7.81e-06 1.03e-06 1.2e-06 3.55e-06 5.46e-06 2.8e-06 1.9e-06 2.02e-06 2.17e-06 1.26e-06 1.04e-06 1.71e-05 1.82e-06 1.62e-07 8.47e-07 2.08e-06 1.82e-06 7.37e-07 5e-07
ENSG00000117448 AKR1A1 279457 2.65e-06 3.03e-06 2.5e-07 1.85e-06 4.77e-07 8.18e-07 1.63e-06 5.61e-07 1.8e-06 8.44e-07 2.55e-06 1.35e-06 3.43e-06 1.43e-06 6.23e-07 1.15e-06 1.1e-06 1.62e-06 5.7e-07 9.52e-07 7.19e-07 2.91e-06 2.1e-06 9.69e-07 3.56e-06 1.1e-06 1.39e-06 1.51e-06 1.85e-06 1.86e-06 1.67e-06 2.62e-07 3.7e-07 8.91e-07 1.05e-06 6.03e-07 6.55e-07 3.86e-07 5.35e-07 3.54e-07 3.59e-07 3.32e-06 5.88e-07 1.74e-07 3.7e-07 3.34e-07 4.12e-07 2.53e-07 2.44e-07
ENSG00000117461 PIK3R3 -303036 2.18e-06 2.53e-06 2.98e-07 1.74e-06 4.65e-07 8.1e-07 1.29e-06 4.05e-07 1.66e-06 7.34e-07 2.35e-06 1.38e-06 3.33e-06 1.43e-06 4.59e-07 1.05e-06 1.03e-06 1.34e-06 5.38e-07 7.4e-07 6.39e-07 2.24e-06 1.79e-06 6.89e-07 3.15e-06 9.13e-07 1.21e-06 1.17e-06 1.65e-06 1.66e-06 1.08e-06 2.81e-07 3.45e-07 6.34e-07 8.99e-07 6.26e-07 7.42e-07 3.37e-07 4.87e-07 2.05e-07 3.53e-07 3e-06 4.85e-07 1.41e-07 3.14e-07 3.46e-07 3.78e-07 1.7e-07 2.61e-07
ENSG00000142961 MOB3C -786891 7.3e-07 4.63e-07 8.51e-08 3.56e-07 1.11e-07 1.54e-07 4.09e-07 7.12e-08 2.66e-07 1.89e-07 4.97e-07 2.98e-07 5.54e-07 1.1e-07 1.24e-07 1.46e-07 1.38e-07 2.93e-07 9.69e-08 7.54e-08 1.6e-07 2.86e-07 2.48e-07 4.81e-08 5.75e-07 1.94e-07 2.43e-07 1.88e-07 1.98e-07 3.15e-07 2.11e-07 8.14e-08 4.87e-08 1.01e-07 1.67e-07 5.23e-08 6.2e-08 5.25e-08 5.59e-08 6.07e-08 4.36e-08 3.85e-07 2.92e-08 1.7e-08 7.89e-08 1.78e-08 9.34e-08 2.71e-09 4.55e-08
ENSG00000159596 TMEM69 141819 5.22e-06 7.18e-06 7.94e-07 3.39e-06 1.53e-06 1.54e-06 6.18e-06 1.12e-06 4.9e-06 2.91e-06 7.6e-06 3.37e-06 8.72e-06 2.24e-06 1.23e-06 3.89e-06 1.98e-06 3.83e-06 1.45e-06 1.15e-06 3.09e-06 5.41e-06 4.48e-06 1.39e-06 8.52e-06 1.72e-06 2.55e-06 1.55e-06 4.47e-06 4.67e-06 2.74e-06 5.08e-07 6.1e-07 1.48e-06 2.06e-06 9.71e-07 9.21e-07 4.58e-07 1.05e-06 5.61e-07 3.62e-07 7.37e-06 6.3e-07 1.68e-07 4.35e-07 1.14e-06 1.01e-06 4.27e-07 4.38e-07
ENSG00000159658 EFCAB14 -889114 4.89e-07 2.67e-07 6.41e-08 2.53e-07 1.1e-07 1.19e-07 3.25e-07 6.12e-08 2.01e-07 1.37e-07 3.25e-07 1.96e-07 3.95e-07 9.15e-08 7.79e-08 1.06e-07 7.3e-08 2.43e-07 7.11e-08 6.73e-08 1.39e-07 2.24e-07 1.86e-07 4.07e-08 3.55e-07 1.56e-07 1.74e-07 1.52e-07 1.4e-07 1.89e-07 1.71e-07 5.4e-08 4.37e-08 9.5e-08 6.98e-08 3.36e-08 5.02e-08 7.92e-08 6.5e-08 8.34e-08 4.07e-08 2.71e-07 2.32e-08 1.14e-08 4.91e-08 8.42e-09 7.8e-08 0.0 4.94e-08
ENSG00000225447 RPS15AP10 183803 4.46e-06 5.13e-06 6.95e-07 2.96e-06 8.63e-07 1.33e-06 3.57e-06 9.52e-07 4.55e-06 2.01e-06 5.33e-06 3.54e-06 7.43e-06 2.17e-06 1.38e-06 2.43e-06 2.06e-06 2.89e-06 1.46e-06 9.72e-07 1.9e-06 4.53e-06 3.38e-06 1.82e-06 5.59e-06 1.14e-06 2.57e-06 1.77e-06 4.2e-06 3.87e-06 2.32e-06 4.73e-07 6.49e-07 1.67e-06 2e-06 8.84e-07 9.07e-07 4.73e-07 1.33e-06 3.41e-07 2.4e-07 5.58e-06 4.01e-07 1.93e-07 3.27e-07 5.87e-07 6.93e-07 2.22e-07 3.52e-07
ENSG00000234329 AL604028.2 178174 4.62e-06 5.1e-06 7.79e-07 3.08e-06 8.72e-07 1.51e-06 4e-06 9.54e-07 4.88e-06 2.11e-06 5.56e-06 3.31e-06 7.2e-06 2.04e-06 1.42e-06 2.69e-06 2e-06 2.72e-06 1.42e-06 9.89e-07 2.12e-06 4.47e-06 3.64e-06 1.86e-06 6.11e-06 1.21e-06 2.53e-06 1.78e-06 4.32e-06 4.13e-06 2.53e-06 4.91e-07 7.71e-07 1.82e-06 2.07e-06 9.23e-07 9.25e-07 4.74e-07 1.23e-06 3.57e-07 2.4e-07 5.55e-06 4.2e-07 1.77e-07 3.45e-07 6.75e-07 6.48e-07 2.4e-07 3.24e-07
ENSG00000280670 CCDC163 329921 1.96e-06 2.66e-06 2.2e-07 1.48e-06 3.68e-07 6.22e-07 1.21e-06 4.44e-07 1.71e-06 7.23e-07 2.02e-06 1.36e-06 2.89e-06 9.7e-07 3.4e-07 1.03e-06 1.13e-06 1.13e-06 6.75e-07 4.92e-07 7.74e-07 1.97e-06 1.54e-06 5.94e-07 2.59e-06 7.43e-07 1.1e-06 1.07e-06 1.67e-06 1.46e-06 7.32e-07 2.54e-07 2.75e-07 5.6e-07 8.1e-07 5.15e-07 6.77e-07 3.65e-07 4.99e-07 2.28e-07 2.71e-07 2.68e-06 4.13e-07 1.38e-07 2.81e-07 3.24e-07 2.69e-07 1.27e-07 2.05e-07