Genes within 1Mb (chr1:45769547:C:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 278384 eQTL 1.89e-24 0.151 0.0144 0.0 0.0 0.363
ENSG00000079277 MKNK1 -847296 eQTL 1.94e-03 0.0393 0.0126 0.0 0.0 0.363
ENSG00000086015 MAST2 -17440 eQTL 1.33e-07 -0.105 0.0197 0.0 0.0 0.363
ENSG00000117461 PIK3R3 -363489 eQTL 2.23e-23 -0.199 0.0195 0.0 0.0 0.363
ENSG00000117481 NSUN4 -570630 eQTL 1.13e-03 0.0804 0.0246 0.0 0.0 0.363
ENSG00000123472 ATPAF1 -904320 eQTL 7.95e-03 0.0523 0.0197 0.0 0.0 0.363
ENSG00000126088 UROD 758597 pQTL 3.05e-02 0.0317 0.0146 0.0 0.0 0.355
ENSG00000126088 UROD 758597 eQTL 3.51e-02 0.0445 0.0211 0.0 0.0 0.363
ENSG00000132781 MUTYH 429077 eQTL 4.71e-02 0.0266 0.0134 0.0 0.0 0.363
ENSG00000142961 MOB3C -847344 eQTL 1.10e-03 0.0625 0.0191 0.0 0.0 0.363
ENSG00000159588 CCDC17 145490 eQTL 2.34e-16 -0.116 0.0139 0.00307 0.00277 0.363
ENSG00000159592 GPBP1L1 81434 eQTL 1.94e-02 -0.0254 0.0108 0.0 0.0 0.363
ENSG00000159596 TMEM69 81366 eQTL 4.36e-15 -0.172 0.0216 0.0 0.0 0.363
ENSG00000159658 EFCAB14 -949567 pQTL 1.92e-04 0.0606 0.0162 0.00246 0.0025 0.355
ENSG00000162415 ZSWIM5 463338 eQTL 3.50e-02 -0.0449 0.0213 0.0 0.0 0.363
ENSG00000197429 IPP 18897 eQTL 5.71e-04 -0.0709 0.0205 0.00121 0.0 0.363
ENSG00000225447 RPS15AP10 123350 eQTL 9.77e-14 0.249 0.033 0.0 0.0 0.363
ENSG00000230896 AL604028.1 72472 eQTL 2.07e-02 -0.0889 0.0383 0.00104 0.0 0.363
ENSG00000234329 AL604028.2 117721 eQTL 3.09e-33 0.292 0.0234 0.0 0.0 0.363
ENSG00000269956 MKNK1-AS1 -769149 eQTL 2.60e-02 0.0522 0.0234 0.0 0.0 0.363
ENSG00000280670 CCDC163 269468 eQTL 7.73e-05 0.149 0.0374 0.0 0.0 0.363


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 278384 4.68e-06 4.82e-06 7.63e-07 1.86e-06 3.96e-07 7.74e-07 2.91e-06 3.66e-07 2.51e-06 8.89e-07 5.68e-06 2.55e-06 7.71e-06 1.37e-06 2.73e-06 2.3e-06 1.61e-06 2.07e-06 8.04e-07 5.62e-07 7.75e-07 4.9e-06 2.13e-06 5.01e-07 4.89e-06 7.53e-07 1.36e-06 1.45e-06 3.22e-06 1.66e-06 2.72e-06 4.1e-08 1.48e-07 6.21e-07 7.37e-07 4.56e-07 1.38e-07 1.61e-07 2.32e-07 7.66e-08 1.01e-07 0.000157 6.31e-07 1.21e-08 1.82e-07 3.36e-07 1.43e-07 0.0 4.82e-08
ENSG00000079277 MKNK1 -847296 6.09e-07 2.56e-07 6.57e-08 2.24e-07 9.16e-08 9.31e-08 3.33e-07 5.2e-08 2.04e-07 6.75e-08 3.92e-07 1.91e-07 4.88e-07 9.18e-08 4.37e-07 1.13e-07 4.18e-08 2.15e-07 5.97e-08 4.07e-08 1.25e-07 2.3e-07 1.58e-07 4.26e-08 3.7e-07 1.25e-07 1.33e-07 1.1e-07 1.37e-07 1.24e-07 1.86e-07 3.76e-08 2.74e-08 8.11e-08 3.51e-08 3.95e-08 4.78e-08 9.56e-08 7.58e-08 3.18e-08 3.43e-08 3.26e-06 4.41e-08 1.49e-08 7.79e-08 6.68e-09 1.26e-07 4.6e-09 4.61e-08
ENSG00000086015 MAST2 -17440 2.47e-05 4.57e-05 8.97e-06 1.84e-05 6.73e-06 1.59e-05 5.58e-05 7.14e-06 5.2e-05 2.67e-05 9.83e-05 3.12e-05 8.36e-05 2.01e-05 1.09e-05 2.73e-05 2.74e-05 3.46e-05 7.49e-06 7.86e-06 2.16e-05 5.58e-05 3.11e-05 8.82e-06 6.14e-05 9.62e-06 1.88e-05 1.73e-05 3.91e-05 3.61e-05 4.64e-05 1.61e-06 2.78e-06 7.79e-06 1.33e-05 6.81e-06 3.59e-06 3.73e-06 6.34e-06 4.01e-06 1.87e-06 0.000107 4.99e-06 5.07e-07 3.83e-06 6.83e-06 3.74e-06 1.73e-06 1.53e-06
ENSG00000117461 PIK3R3 -363489 2.64e-06 2.61e-06 3.17e-07 1.29e-06 1.77e-07 6.4e-07 1.48e-06 2.28e-07 1.77e-06 5.89e-07 2.77e-06 1.31e-06 3.33e-06 1.13e-06 1.21e-06 1.18e-06 1.14e-06 1.34e-06 4.54e-07 1.9e-07 7.11e-07 3.12e-06 1.12e-06 1.73e-07 3.08e-06 3.71e-07 1.03e-06 9.43e-07 1.73e-06 1.16e-06 1.84e-06 8.02e-08 4.28e-08 3.82e-07 5.46e-07 2.96e-07 7.97e-08 1.07e-07 7.9e-08 2.22e-08 2.87e-08 6.97e-05 4.34e-07 1.53e-08 1.16e-07 2.32e-07 7.25e-08 1.98e-09 4.82e-08
ENSG00000142961 MOB3C -847344 6.09e-07 2.56e-07 6.57e-08 2.24e-07 9.16e-08 9.31e-08 3.33e-07 5.2e-08 2.04e-07 6.75e-08 3.92e-07 1.91e-07 4.88e-07 9.18e-08 4.37e-07 1.13e-07 4.18e-08 2.15e-07 5.97e-08 4.07e-08 1.25e-07 2.3e-07 1.58e-07 4.26e-08 3.7e-07 1.25e-07 1.33e-07 1.1e-07 1.37e-07 1.24e-07 1.86e-07 3.76e-08 2.74e-08 8.11e-08 3.51e-08 3.95e-08 4.78e-08 9.56e-08 7.58e-08 3.18e-08 3.43e-08 3.26e-06 4.41e-08 1.49e-08 7.79e-08 6.68e-09 1.26e-07 4.6e-09 4.61e-08
ENSG00000159588 CCDC17 145490 8.53e-06 1.13e-05 1.04e-06 3.36e-06 8.67e-07 1.53e-06 9.75e-06 8.37e-07 5.86e-06 3.09e-06 1.41e-05 4.15e-06 1.39e-05 3.87e-06 4.6e-06 5.46e-06 3.58e-06 4.4e-06 1.51e-06 1.16e-06 2.79e-06 1.03e-05 4.63e-06 9.56e-07 1.26e-05 1.27e-06 2.97e-06 1.82e-06 6.75e-06 4.43e-06 5.96e-06 2.73e-07 3.95e-07 1.61e-06 2.06e-06 9.34e-07 6.93e-07 3.79e-07 9.94e-07 2.57e-07 3.35e-07 0.000256 1.42e-06 1.32e-07 3.21e-07 1.14e-06 3.7e-07 8.97e-08 8.61e-08
ENSG00000159596 TMEM69 81366 9.98e-06 1.92e-05 2.38e-06 5.99e-06 1.87e-06 3.7e-06 1.41e-05 1.26e-06 1.18e-05 5.52e-06 2.52e-05 6.86e-06 2.57e-05 5.09e-06 5.26e-06 7.26e-06 6.42e-06 9.79e-06 1.43e-06 1.16e-06 4.97e-06 1.55e-05 6.85e-06 1.48e-06 2.63e-05 2.4e-06 5.98e-06 3.99e-06 1.06e-05 7.93e-06 1.2e-05 4.37e-07 8.14e-07 2.62e-06 2.96e-06 1.17e-06 9.46e-07 5.41e-07 8.77e-07 4.88e-07 3.06e-07 0.000144 1.82e-06 1.69e-07 6.78e-07 1.75e-06 7.92e-07 2.3e-07 2.21e-07
ENSG00000159658 EFCAB14 -949567 4.21e-07 1.67e-07 6.26e-08 2.05e-07 8.83e-08 8.33e-08 2.4e-07 5.33e-08 1.75e-07 5.42e-08 2.18e-07 1.37e-07 3.18e-07 8.66e-08 3.12e-07 9.01e-08 4.01e-08 1.56e-07 5.39e-08 4.03e-08 1.19e-07 1.81e-07 1.45e-07 4.67e-08 2.36e-07 1.14e-07 1.2e-07 9.92e-08 1.26e-07 1.03e-07 1.35e-07 3.95e-08 2.74e-08 8.55e-08 3.63e-08 3.96e-08 5.54e-08 9.25e-08 8.3e-08 3.07e-08 3.07e-08 2.11e-06 1.6e-08 1.38e-08 8.16e-08 1.68e-08 1.26e-07 4.7e-09 4.61e-08
ENSG00000162415 ZSWIM5 463338 1.42e-06 1.31e-06 2.77e-07 4.88e-07 9.29e-08 4.7e-07 1.52e-06 9.78e-08 1.46e-06 3.24e-07 2.07e-06 8.59e-07 2.53e-06 2.77e-07 1.39e-06 9.14e-07 8.4e-07 6.5e-07 2.51e-07 7.29e-08 2.38e-07 1.93e-06 6.33e-07 4.34e-08 2.22e-06 2.54e-07 7.61e-07 5.29e-07 1.28e-06 1.04e-06 7.8e-07 3.78e-08 4.27e-08 1.54e-07 3.39e-07 7.68e-08 4.43e-08 5.25e-08 5.25e-08 7.65e-08 5.81e-08 2.52e-05 4.85e-07 1.73e-08 4.36e-08 1.11e-07 7.26e-08 3.8e-09 4.79e-08
ENSG00000225447 RPS15AP10 123350 9.27e-06 1.25e-05 1.3e-06 3.85e-06 1.3e-06 1.93e-06 1.02e-05 9.79e-07 7.89e-06 4.11e-06 1.71e-05 4.89e-06 1.7e-05 3.92e-06 4.98e-06 6.29e-06 3.8e-06 6.49e-06 1.43e-06 1.39e-06 2.66e-06 1.18e-05 4.68e-06 1.32e-06 1.53e-05 1.63e-06 3.74e-06 2.11e-06 7.08e-06 6.17e-06 7.63e-06 3.26e-07 6.41e-07 1.89e-06 2.04e-06 9.23e-07 8.32e-07 4.59e-07 1.35e-06 3.79e-07 3.03e-07 0.000228 1.48e-06 2.07e-07 3.34e-07 8.44e-07 5.64e-07 7.74e-08 1.58e-07
ENSG00000230896 AL604028.1 72472 1.02e-05 2.15e-05 2.5e-06 6.5e-06 2.18e-06 3.93e-06 1.59e-05 1.49e-06 1.37e-05 6.24e-06 2.83e-05 7.34e-06 2.88e-05 5.67e-06 5.24e-06 8.18e-06 7.72e-06 1.07e-05 1.63e-06 1.54e-06 5.35e-06 1.7e-05 7.13e-06 1.99e-06 2.89e-05 2.78e-06 6.78e-06 4.68e-06 1.16e-05 9.11e-06 1.29e-05 4.15e-07 7.91e-07 2.77e-06 3.58e-06 1.59e-06 1.06e-06 9.68e-07 1.29e-06 5.64e-07 4.51e-07 0.000129 2.27e-06 1.66e-07 7.89e-07 1.76e-06 9.74e-07 2.63e-07 1.55e-07
ENSG00000234329 AL604028.2 117721 9.14e-06 1.28e-05 1.24e-06 3.92e-06 1.51e-06 2.14e-06 1.03e-05 9.69e-07 8.5e-06 4.42e-06 1.79e-05 5.15e-06 1.8e-05 3.78e-06 5.14e-06 6.37e-06 3.81e-06 6.71e-06 1.39e-06 1.21e-06 3.02e-06 1.2e-05 4.8e-06 1.62e-06 1.66e-05 1.74e-06 4.22e-06 2.34e-06 7.52e-06 6.54e-06 7.73e-06 3.97e-07 5.19e-07 1.6e-06 1.99e-06 8.35e-07 8.44e-07 5.28e-07 1.31e-06 4.35e-07 3.05e-07 0.000218 1.44e-06 2.06e-07 4.01e-07 9.55e-07 6.93e-07 3.68e-08 1.58e-07
ENSG00000269956 MKNK1-AS1 -769149 8.21e-07 4e-07 8.51e-08 2.41e-07 9.79e-08 1.26e-07 4.25e-07 5.43e-08 2.75e-07 1.03e-07 6.28e-07 2.98e-07 7.02e-07 1.1e-07 5.72e-07 1.53e-07 5.57e-08 2.83e-07 6.75e-08 4.04e-08 1.18e-07 3.1e-07 1.69e-07 4.05e-08 5.75e-07 1.26e-07 1.74e-07 1.42e-07 1.58e-07 1.8e-07 2.55e-07 3.84e-08 2.92e-08 8.89e-08 5.41e-08 3.2e-08 4.79e-08 9.68e-08 7.2e-08 3.37e-08 4.45e-08 4.1e-06 6.44e-08 1.17e-08 6.38e-08 8.24e-09 1.26e-07 4.5e-09 4.74e-08
ENSG00000280670 CCDC163 269468 4.54e-06 5.05e-06 7.66e-07 1.85e-06 3.82e-07 7.92e-07 3.07e-06 3.44e-07 2.79e-06 9.88e-07 6.14e-06 2.89e-06 7.2e-06 1.62e-06 2.94e-06 2.43e-06 1.64e-06 2.35e-06 7.14e-07 6.39e-07 9.57e-07 4.88e-06 2.31e-06 5.36e-07 4.97e-06 8.11e-07 1.44e-06 1.67e-06 3.74e-06 1.88e-06 2.75e-06 4.28e-08 1.75e-07 6.16e-07 8.27e-07 4.45e-07 1.86e-07 1.69e-07 2.95e-07 9.03e-08 1.14e-07 0.000171 6.63e-07 1.23e-08 1.73e-07 3.28e-07 1.71e-07 0.0 5.58e-08