Genes within 1Mb (chr1:45758647:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 267484 eQTL 1.42e-24 0.151 0.0143 0.0 0.0 0.363
ENSG00000079277 MKNK1 -858196 eQTL 1.96e-03 0.0392 0.0126 0.0 0.0 0.363
ENSG00000086015 MAST2 -28340 eQTL 1.23e-07 -0.105 0.0197 0.0 0.0 0.363
ENSG00000117461 PIK3R3 -374389 eQTL 2.84e-23 -0.199 0.0195 0.0 0.0 0.363
ENSG00000117481 NSUN4 -581530 eQTL 1.23e-03 0.0796 0.0246 0.0 0.0 0.363
ENSG00000123472 ATPAF1 -915220 eQTL 8.13e-03 0.0521 0.0196 0.0 0.0 0.363
ENSG00000126088 UROD 747697 pQTL 3.28e-02 0.0312 0.0146 0.0 0.0 0.355
ENSG00000126088 UROD 747697 eQTL 3.58e-02 0.0442 0.021 0.0 0.0 0.363
ENSG00000132781 MUTYH 418177 eQTL 4.58e-02 0.0267 0.0133 0.0 0.0 0.363
ENSG00000142961 MOB3C -858244 eQTL 1.09e-03 0.0624 0.019 0.0 0.0 0.363
ENSG00000159588 CCDC17 134590 eQTL 2.38e-16 -0.116 0.0139 0.00307 0.00277 0.363
ENSG00000159592 GPBP1L1 70534 eQTL 2.03e-02 -0.0252 0.0108 0.0 0.0 0.363
ENSG00000159596 TMEM69 70466 eQTL 4.66e-15 -0.172 0.0216 0.0 0.0 0.363
ENSG00000159658 EFCAB14 -960467 pQTL 2.30e-04 0.0599 0.0162 0.00223 0.00214 0.355
ENSG00000162415 ZSWIM5 452438 eQTL 3.68e-02 -0.0444 0.0212 0.0 0.0 0.363
ENSG00000197429 IPP 7997 eQTL 6.15e-04 -0.0704 0.0205 0.00114 0.0 0.363
ENSG00000225447 RPS15AP10 112450 eQTL 8.49e-14 0.25 0.0329 0.0 0.0 0.363
ENSG00000230896 AL604028.1 61572 eQTL 2.06e-02 -0.0888 0.0383 0.00104 0.0 0.363
ENSG00000234329 AL604028.2 106821 eQTL 3.38e-33 0.291 0.0234 0.0 0.0 0.363
ENSG00000269956 MKNK1-AS1 -780049 eQTL 2.61e-02 0.0521 0.0234 0.0 0.0 0.363
ENSG00000280670 CCDC163 258568 eQTL 7.38e-05 0.149 0.0374 0.0 0.0 0.363


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 267484 1.27e-06 1.01e-06 2.53e-07 1.14e-06 3.55e-07 5.98e-07 1.55e-06 4.35e-07 1.5e-06 5.93e-07 1.89e-06 8.59e-07 2.29e-06 2.81e-07 5.04e-07 9.45e-07 9.8e-07 9.05e-07 7.22e-07 4.81e-07 7.55e-07 1.89e-06 9.91e-07 6.29e-07 2.19e-06 7.4e-07 9.72e-07 8.91e-07 1.59e-06 1.2e-06 7.41e-07 2.61e-07 2.96e-07 6.08e-07 5.3e-07 4.82e-07 6.91e-07 3.09e-07 4.67e-07 2.8e-07 2.72e-07 1.56e-06 2.92e-07 1.06e-07 3.04e-07 2.14e-07 2.59e-07 1.42e-07 2.89e-07
ENSG00000079277 MKNK1 -858196 2.76e-07 1.27e-07 5.82e-08 1.82e-07 9.87e-08 9.05e-08 1.6e-07 5.75e-08 1.45e-07 6.08e-08 1.52e-07 1.05e-07 1.53e-07 7.37e-08 6.18e-08 7.23e-08 4.18e-08 1.44e-07 6.75e-08 4.78e-08 1.25e-07 1.25e-07 1.44e-07 2.87e-08 1.55e-07 1.22e-07 1.18e-07 9.74e-08 1.23e-07 9.88e-08 1.02e-07 3.59e-08 3.59e-08 8.56e-08 5.64e-08 2.99e-08 5.59e-08 9.17e-08 6.71e-08 3.92e-08 5e-08 1.33e-07 4.87e-08 1.86e-08 3.42e-08 1.92e-08 9.29e-08 1.92e-09 4.83e-08
ENSG00000086015 MAST2 -28340 1.23e-05 1.3e-05 2.65e-06 8.31e-06 2.91e-06 6.44e-06 1.88e-05 2.68e-06 1.37e-05 6.68e-06 1.76e-05 6.86e-06 2.44e-05 5.17e-06 4.5e-06 9e-06 8.06e-06 1.21e-05 4.36e-06 4.15e-06 7.26e-06 1.3e-05 1.37e-05 5.19e-06 2.4e-05 5.34e-06 7.53e-06 5.97e-06 1.59e-05 1.68e-05 8.79e-06 1.22e-06 1.74e-06 4.94e-06 6.38e-06 4.06e-06 2.08e-06 2.71e-06 3.2e-06 2.37e-06 1.67e-06 1.68e-05 2.23e-06 3.66e-07 1.93e-06 2.52e-06 2.6e-06 1.3e-06 1.04e-06
ENSG00000117461 PIK3R3 -374389 1.25e-06 8.47e-07 3.06e-07 4.14e-07 1.79e-07 3.12e-07 7e-07 3.02e-07 8.46e-07 2.77e-07 1.07e-06 5.55e-07 1.15e-06 2.06e-07 4.03e-07 4.84e-07 7.43e-07 5.31e-07 4e-07 3.93e-07 2.8e-07 7.26e-07 5.66e-07 4.22e-07 1.36e-06 2.54e-07 5.49e-07 4.23e-07 7e-07 9.25e-07 4.32e-07 3.85e-08 1.5e-07 2.72e-07 3.39e-07 3.05e-07 2.46e-07 1.55e-07 1.13e-07 1.8e-08 1.8e-07 7.38e-07 7.72e-08 1.25e-08 1.83e-07 5.38e-08 1.6e-07 8.51e-08 8.21e-08
ENSG00000132781 MUTYH 418177 9.39e-07 6.42e-07 1.87e-07 4.04e-07 9.23e-08 2.95e-07 6.06e-07 2.28e-07 6.18e-07 3.1e-07 8.28e-07 4.94e-07 9.23e-07 1.6e-07 3.08e-07 3.35e-07 5.63e-07 4.39e-07 2.87e-07 1.91e-07 2.55e-07 5.18e-07 4.08e-07 2.68e-07 8.99e-07 2.64e-07 4.25e-07 3.18e-07 5.03e-07 7.6e-07 3.49e-07 3.31e-08 9.26e-08 1.69e-07 3.52e-07 1.71e-07 1.31e-07 1.17e-07 7.9e-08 2.22e-08 1.01e-07 5.79e-07 7.3e-08 5.58e-09 1.94e-07 3.87e-08 1.41e-07 5.86e-08 4.96e-08
ENSG00000142961 MOB3C -858244 2.76e-07 1.27e-07 5.82e-08 1.82e-07 9.87e-08 9.05e-08 1.6e-07 5.75e-08 1.45e-07 6.08e-08 1.52e-07 1.05e-07 1.53e-07 7.37e-08 6.18e-08 7.23e-08 4.18e-08 1.44e-07 6.75e-08 4.78e-08 1.25e-07 1.25e-07 1.44e-07 2.87e-08 1.55e-07 1.22e-07 1.18e-07 9.74e-08 1.23e-07 9.88e-08 1.02e-07 3.59e-08 3.59e-08 8.56e-08 5.64e-08 2.99e-08 5.59e-08 9.17e-08 6.71e-08 3.92e-08 5e-08 1.33e-07 4.87e-08 1.86e-08 3.42e-08 1.92e-08 9.29e-08 1.92e-09 4.83e-08
ENSG00000159588 CCDC17 134590 4.32e-06 4.34e-06 9.35e-07 2.04e-06 1.47e-06 1.21e-06 2.94e-06 9.79e-07 4.15e-06 2.06e-06 4.16e-06 3.32e-06 6.47e-06 1.62e-06 1.44e-06 2.78e-06 2.09e-06 2.75e-06 1.43e-06 1.02e-06 2.63e-06 4.35e-06 3.38e-06 1.4e-06 4.89e-06 1.74e-06 2.47e-06 1.55e-06 4.32e-06 3.97e-06 2.04e-06 4.91e-07 4.91e-07 1.75e-06 2.09e-06 9.6e-07 9.52e-07 4.42e-07 1.04e-06 3.58e-07 6.37e-07 4.74e-06 4.18e-07 1.81e-07 5.64e-07 6.22e-07 9.47e-07 5.21e-07 4.54e-07
ENSG00000159596 TMEM69 70466 6.66e-06 8.23e-06 1.23e-06 4.01e-06 2.26e-06 3.41e-06 9.73e-06 1.8e-06 6.18e-06 4.33e-06 9.08e-06 4.5e-06 1.12e-05 3.53e-06 1.91e-06 5.77e-06 3.8e-06 5.1e-06 2.68e-06 2.65e-06 4.48e-06 7.65e-06 6.67e-06 3.16e-06 1.08e-05 3.1e-06 4.36e-06 2.73e-06 7.59e-06 7.96e-06 4.24e-06 8.39e-07 1.25e-06 3.01e-06 3.15e-06 2.19e-06 1.72e-06 1.85e-06 1.61e-06 1.01e-06 9.48e-07 8.07e-06 1.16e-06 1.9e-07 7.68e-07 1.48e-06 1.26e-06 7.99e-07 4.15e-07
ENSG00000159658 EFCAB14 -960467 2.74e-07 1.25e-07 5.03e-08 1.84e-07 9.24e-08 9.9e-08 1.53e-07 5.53e-08 1.45e-07 5.42e-08 1.57e-07 9e-08 1.45e-07 6.76e-08 6.04e-08 7.36e-08 4.01e-08 1.27e-07 5.97e-08 4.16e-08 1.21e-07 1.24e-07 1.44e-07 3.03e-08 1.4e-07 1.21e-07 1.07e-07 9.65e-08 1.12e-07 1.07e-07 9.7e-08 3.08e-08 3.96e-08 8.34e-08 7.51e-08 3.49e-08 4.95e-08 8.61e-08 6.55e-08 4.02e-08 5.14e-08 1.33e-07 5.24e-08 1.29e-08 4.92e-08 1.84e-08 1.21e-07 1.88e-09 4.99e-08
ENSG00000162415 ZSWIM5 452438 8.43e-07 5.18e-07 1.48e-07 3.58e-07 1.12e-07 2.16e-07 5.28e-07 1.73e-07 4.43e-07 2.62e-07 6.28e-07 3.91e-07 7.19e-07 1.23e-07 2.35e-07 2.69e-07 4.3e-07 4.11e-07 2.56e-07 1.71e-07 2.52e-07 4.14e-07 3.77e-07 1.91e-07 6.87e-07 2.74e-07 3.16e-07 2.65e-07 4.06e-07 6.19e-07 2.73e-07 5.82e-08 4.57e-08 1.54e-07 3.05e-07 1.28e-07 1.07e-07 1.03e-07 6.72e-08 2.53e-08 8.81e-08 4.16e-07 5.78e-08 1.52e-08 1.45e-07 1.42e-08 1.18e-07 3.05e-08 6.03e-08
ENSG00000225447 RPS15AP10 112450 4.68e-06 4.82e-06 6.07e-07 2.89e-06 1.73e-06 1.7e-06 4.6e-06 1.1e-06 5.18e-06 2.5e-06 5.34e-06 3.27e-06 7.12e-06 2.33e-06 1.23e-06 3.83e-06 1.88e-06 3.83e-06 1.45e-06 1.37e-06 2.79e-06 4.91e-06 4.62e-06 1.71e-06 6.39e-06 2.07e-06 2.35e-06 1.77e-06 4.41e-06 4.4e-06 2.75e-06 4.17e-07 7.14e-07 1.84e-06 2.04e-06 1.18e-06 1.08e-06 4.36e-07 8.53e-07 5.97e-07 8.05e-07 5.64e-06 4.37e-07 1.68e-07 7.66e-07 1.25e-06 1.16e-06 6.72e-07 5.88e-07
ENSG00000230896 AL604028.1 61572 7.81e-06 9.31e-06 1.29e-06 4.36e-06 2.39e-06 3.88e-06 9.61e-06 1.92e-06 7.7e-06 4.81e-06 1.06e-05 4.97e-06 1.22e-05 3.89e-06 2.33e-06 6.06e-06 3.89e-06 6.49e-06 2.61e-06 2.93e-06 4.66e-06 8.11e-06 6.96e-06 3.38e-06 1.25e-05 3.8e-06 4.56e-06 3.37e-06 9.05e-06 8.06e-06 4.51e-06 9.54e-07 1.19e-06 3.29e-06 3.62e-06 2.59e-06 1.83e-06 1.98e-06 2.15e-06 9.53e-07 1.05e-06 9.58e-06 1.26e-06 2.09e-07 7.75e-07 1.66e-06 1.38e-06 7.04e-07 4.95e-07
ENSG00000234329 AL604028.2 106821 4.54e-06 4.88e-06 6.42e-07 3.1e-06 1.54e-06 1.6e-06 5.25e-06 1.2e-06 4.95e-06 2.91e-06 5.73e-06 3.36e-06 7.69e-06 2.04e-06 1.16e-06 3.74e-06 1.98e-06 3.99e-06 1.51e-06 1.4e-06 2.77e-06 4.9e-06 4.63e-06 1.93e-06 7.21e-06 2.16e-06 2.22e-06 1.44e-06 4.66e-06 4.98e-06 2.85e-06 4.15e-07 7.75e-07 2.15e-06 1.96e-06 1.09e-06 1.06e-06 5e-07 9.25e-07 6.04e-07 8.2e-07 5.71e-06 5.44e-07 1.49e-07 7.41e-07 1.12e-06 1.1e-06 7.43e-07 5.97e-07
ENSG00000269956 MKNK1-AS1 -780049 2.77e-07 1.36e-07 6.28e-08 1.97e-07 9.82e-08 8.45e-08 1.73e-07 5.68e-08 1.5e-07 7.6e-08 1.73e-07 1.19e-07 1.71e-07 7.64e-08 5.82e-08 7.89e-08 4.31e-08 1.64e-07 7.18e-08 5.07e-08 1.22e-07 1.39e-07 1.58e-07 3.07e-08 1.65e-07 1.31e-07 1.17e-07 1.04e-07 1.31e-07 1.06e-07 1.08e-07 3.78e-08 3.38e-08 8.89e-08 3.81e-08 3.07e-08 5.74e-08 8.25e-08 6.76e-08 3.67e-08 5.39e-08 1.46e-07 3.55e-08 7.78e-09 3.2e-08 1.71e-08 7.92e-08 2.02e-09 4.98e-08
ENSG00000280670 CCDC163 258568 1.3e-06 1.18e-06 2.19e-07 1.14e-06 4.18e-07 6.17e-07 1.48e-06 4.27e-07 1.67e-06 6.44e-07 1.95e-06 9.12e-07 2.47e-06 2.77e-07 4.89e-07 9.52e-07 1.01e-06 1.05e-06 6.4e-07 4.4e-07 7.69e-07 1.91e-06 1.14e-06 5.73e-07 2.26e-06 7.8e-07 1.06e-06 9.25e-07 1.64e-06 1.27e-06 7.69e-07 2.81e-07 3.23e-07 6.06e-07 5.76e-07 5.26e-07 6.8e-07 3.58e-07 4.58e-07 3.34e-07 3.35e-07 1.6e-06 3.55e-07 1.3e-07 3.17e-07 2.35e-07 2.8e-07 1.7e-07 3e-07