Genes within 1Mb (chr1:45707809:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 216646 eQTL 1.69e-25 0.159 0.0148 0.0 0.0 0.309
ENSG00000079277 MKNK1 -909034 eQTL 1.66e-02 0.0314 0.0131 0.0 0.0 0.309
ENSG00000086015 MAST2 -79178 eQTL 2.73e-23 -0.2 0.0196 0.0 0.0 0.309
ENSG00000117450 PRDX1 184762 pQTL 4.83e-02 0.0348 0.0176 0.0 0.0 0.303
ENSG00000117461 PIK3R3 -425227 eQTL 3.70e-20 -0.191 0.0203 0.0 0.0 0.309
ENSG00000117481 NSUN4 -632368 eQTL 4.76e-04 0.0891 0.0254 0.0 0.0 0.309
ENSG00000123472 ATPAF1 -966058 eQTL 1.52e-02 0.0494 0.0203 0.0 0.0 0.309
ENSG00000142961 MOB3C -909082 eQTL 8.36e-05 0.0776 0.0196 0.00114 0.0 0.309
ENSG00000159588 CCDC17 83752 eQTL 3.91e-04 -0.0527 0.0148 0.0 0.00134 0.309
ENSG00000159592 GPBP1L1 19696 eQTL 9.61e-05 -0.0437 0.0111 0.00116 0.0 0.309
ENSG00000159596 TMEM69 19628 eQTL 2.76e-18 -0.197 0.0222 0.0 0.00139 0.309
ENSG00000197429 IPP -42841 eQTL 2.49e-02 -0.0478 0.0213 0.0 0.0 0.309
ENSG00000222009 BTBD19 899327 eQTL 3.73e-02 0.0321 0.0154 0.0 0.0 0.309
ENSG00000225447 RPS15AP10 61612 eQTL 1.78e-18 0.302 0.0337 0.0 0.0 0.309
ENSG00000234329 AL604028.2 55983 eQTL 7.41e-46 0.352 0.0234 0.0217 0.0242 0.309
ENSG00000280670 CCDC163 207730 eQTL 1.89e-05 0.166 0.0386 0.0 0.0 0.309
ENSG00000281912 LINC01144 403899 eQTL 1.62e-02 -0.0849 0.0352 0.0 0.0 0.309


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 216646 2.17e-06 2.46e-06 2.59e-07 1.44e-06 4.87e-07 7.98e-07 1.31e-06 4.45e-07 1.78e-06 7.61e-07 1.9e-06 1.45e-06 3.24e-06 7.96e-07 4.63e-07 1.02e-06 9.83e-07 1.3e-06 6.25e-07 7.92e-07 6.41e-07 2.02e-06 1.79e-06 1.02e-06 2.52e-06 9.3e-07 1.1e-06 9.91e-07 1.68e-06 1.67e-06 7.32e-07 2.31e-07 4.73e-07 9.24e-07 9.13e-07 6.23e-07 7.06e-07 3.9e-07 5.99e-07 2.27e-07 3.5e-07 2.63e-06 3.74e-07 1.38e-07 3.7e-07 2.93e-07 4.32e-07 2.18e-07 2.89e-07
ENSG00000086015 MAST2 -79178 7.46e-06 9.33e-06 1.32e-06 3.95e-06 1.87e-06 3.26e-06 9.67e-06 1.36e-06 5.77e-06 4.04e-06 9.14e-06 4.35e-06 1.12e-05 3.53e-06 1.73e-06 4.63e-06 3.69e-06 3.94e-06 2.26e-06 2.41e-06 3.42e-06 7.66e-06 6.24e-06 2.22e-06 1.03e-05 2.4e-06 3.82e-06 2.36e-06 7.11e-06 7.73e-06 4.13e-06 4.97e-07 8.15e-07 2.7e-06 2.88e-06 1.85e-06 1.2e-06 1.32e-06 1.31e-06 8.19e-07 7.1e-07 8.98e-06 8.87e-07 1.55e-07 7.32e-07 1.01e-06 9.12e-07 6.23e-07 6.2e-07
ENSG00000117448 \N 157266 4.04e-06 4.13e-06 6.66e-07 1.86e-06 8e-07 9.27e-07 2.39e-06 8.98e-07 2.53e-06 1.47e-06 3.41e-06 2.2e-06 5.6e-06 1.2e-06 9.69e-07 1.93e-06 1.61e-06 2.11e-06 1.47e-06 1.18e-06 1.43e-06 3.51e-06 3.42e-06 1.62e-06 4.53e-06 1.19e-06 1.77e-06 1.81e-06 3.54e-06 3.39e-06 1.98e-06 3.79e-07 7.09e-07 1.59e-06 1.75e-06 9.33e-07 9.22e-07 4.52e-07 1.23e-06 3.64e-07 1.51e-07 4.14e-06 5.11e-07 1.99e-07 3.06e-07 3.33e-07 8.16e-07 2.38e-07 1.59e-07
ENSG00000117461 PIK3R3 -425227 1.13e-06 6.81e-07 1.48e-07 4.32e-07 1.12e-07 3.08e-07 6.29e-07 1.76e-07 5.3e-07 2.81e-07 9e-07 4.94e-07 9.97e-07 1.59e-07 3.15e-07 2.55e-07 5.41e-07 4.11e-07 2.88e-07 1.87e-07 2.38e-07 5.17e-07 4.06e-07 2.49e-07 9.71e-07 2.54e-07 4.16e-07 2.63e-07 4.63e-07 8.56e-07 3.38e-07 5.45e-08 9.36e-08 1.79e-07 3.82e-07 1.8e-07 1.05e-07 1.18e-07 7.9e-08 2.2e-08 9.77e-08 6.19e-07 6.44e-08 1.55e-08 1.78e-07 3.92e-08 1.37e-07 7.35e-08 5.95e-08
ENSG00000132128 \N -595799 4.89e-07 2.4e-07 7.45e-08 2.41e-07 1.03e-07 1.25e-07 3.33e-07 7.56e-08 1.96e-07 1.21e-07 2.38e-07 1.91e-07 3.6e-07 8.42e-08 8.45e-08 1.01e-07 8.53e-08 2.43e-07 9.19e-08 8.1e-08 1.35e-07 2.07e-07 2.11e-07 5.01e-08 2.86e-07 1.65e-07 1.48e-07 1.42e-07 1.47e-07 2.59e-07 1.35e-07 6.78e-08 5.64e-08 1.01e-07 1.16e-07 5.05e-08 5.71e-08 6.56e-08 4.82e-08 8.34e-08 4.89e-08 2e-07 1.6e-08 7.28e-09 6.59e-08 8.76e-09 9.34e-08 3.2e-09 4.59e-08
ENSG00000142961 MOB3C -909082 2.76e-07 1.3e-07 5.14e-08 1.81e-07 9.24e-08 9.91e-08 1.61e-07 5.48e-08 1.45e-07 5.42e-08 1.54e-07 9.19e-08 1.47e-07 6.76e-08 5.91e-08 7.53e-08 4.01e-08 1.27e-07 6.07e-08 4.3e-08 1.22e-07 1.24e-07 1.45e-07 2.64e-08 1.46e-07 1.14e-07 1.07e-07 9.65e-08 1.16e-07 9.88e-08 9.7e-08 3.39e-08 3.51e-08 8.11e-08 6.34e-08 3.14e-08 5.29e-08 9.03e-08 6.71e-08 3.92e-08 5.42e-08 1.36e-07 5.39e-08 1.11e-08 3.4e-08 1.89e-08 1.2e-07 1.95e-09 5e-08
ENSG00000159588 CCDC17 83752 6.95e-06 8.97e-06 9.94e-07 3.98e-06 1.72e-06 2.71e-06 9.3e-06 1.29e-06 5.25e-06 3.58e-06 8.86e-06 3.57e-06 1.13e-05 3.18e-06 1.55e-06 4.51e-06 3.82e-06 3.84e-06 2.19e-06 2.11e-06 3.12e-06 7.5e-06 5.59e-06 1.93e-06 9.79e-06 2.25e-06 3.62e-06 1.9e-06 6.95e-06 7.71e-06 3.89e-06 4.9e-07 6.44e-07 2.75e-06 2.59e-06 1.68e-06 1.04e-06 9.96e-07 1.37e-06 7.33e-07 7.35e-07 8.14e-06 8.49e-07 1.54e-07 7.7e-07 8.35e-07 9.03e-07 6.6e-07 5.96e-07
ENSG00000159596 TMEM69 19628 2.04e-05 2.37e-05 4.31e-06 1.27e-05 3.44e-06 9.8e-06 2.91e-05 3.46e-06 1.94e-05 9.83e-06 2.63e-05 1.01e-05 3.66e-05 9.2e-06 5.5e-06 1.15e-05 1.13e-05 1.75e-05 6.02e-06 5.18e-06 9.59e-06 2.16e-05 2.17e-05 6.42e-06 3.13e-05 5.47e-06 8.4e-06 8.35e-06 2.28e-05 2.02e-05 1.31e-05 1.44e-06 2.04e-06 5.45e-06 8.64e-06 4.51e-06 2.24e-06 2.82e-06 3.64e-06 2.69e-06 1.55e-06 2.73e-05 2.63e-06 2.71e-07 1.91e-06 2.69e-06 3.33e-06 1.35e-06 1.24e-06
ENSG00000225447 RPS15AP10 61612 9e-06 1e-05 1.26e-06 5.17e-06 2.24e-06 4.2e-06 1.04e-05 1.86e-06 8.81e-06 5.09e-06 1.2e-05 5.25e-06 1.46e-05 3.91e-06 2.66e-06 6.29e-06 4.44e-06 6.85e-06 2.62e-06 2.91e-06 4.74e-06 9e-06 7.64e-06 3.21e-06 1.3e-05 3.35e-06 4.85e-06 3.31e-06 9.77e-06 8.58e-06 5.4e-06 8.39e-07 1.23e-06 3e-06 4.14e-06 2.36e-06 1.63e-06 1.97e-06 1.98e-06 9.95e-07 8.59e-07 1.25e-05 1.29e-06 1.61e-07 6.87e-07 1.67e-06 1.38e-06 7.55e-07 4.54e-07
ENSG00000234329 AL604028.2 55983 9.84e-06 1.16e-05 1.56e-06 6.13e-06 2.45e-06 4.37e-06 1.13e-05 2.07e-06 9.59e-06 5.16e-06 1.25e-05 5.59e-06 1.62e-05 3.69e-06 3.14e-06 6.52e-06 4.94e-06 7.79e-06 2.69e-06 2.77e-06 5.02e-06 9.68e-06 8.83e-06 3.32e-06 1.42e-05 3.77e-06 4.86e-06 3.88e-06 1.1e-05 9.19e-06 5.96e-06 9.81e-07 1.19e-06 3.35e-06 4.55e-06 2.66e-06 1.73e-06 1.86e-06 2.16e-06 1.02e-06 1.02e-06 1.3e-05 1.43e-06 1.58e-07 7.51e-07 1.76e-06 1.72e-06 7.5e-07 4.27e-07
ENSG00000269956 \N -830887 2.77e-07 1.34e-07 5.35e-08 1.9e-07 1.01e-07 8.45e-08 1.73e-07 5.66e-08 1.45e-07 6.08e-08 1.57e-07 1.08e-07 1.69e-07 7.37e-08 6.25e-08 7.49e-08 4.18e-08 1.4e-07 6.75e-08 4.92e-08 1.25e-07 1.26e-07 1.58e-07 3.17e-08 1.55e-07 1.25e-07 1.18e-07 9.74e-08 1.23e-07 1.06e-07 1.02e-07 3.78e-08 3.29e-08 8.89e-08 3.46e-08 3.22e-08 5.8e-08 8.57e-08 6.67e-08 3.67e-08 5.41e-08 1.46e-07 4.83e-08 1.3e-08 3.2e-08 1.65e-08 9.96e-08 2.07e-09 4.81e-08
ENSG00000280670 CCDC163 207730 2.41e-06 2.68e-06 2.69e-07 1.56e-06 4.39e-07 7.82e-07 1.48e-06 4.94e-07 1.78e-06 7.42e-07 1.96e-06 1.42e-06 3.42e-06 9.31e-07 5.75e-07 1.06e-06 1.04e-06 1.33e-06 7.09e-07 9.52e-07 6.53e-07 2.31e-06 1.88e-06 9.78e-07 2.57e-06 1.01e-06 1.22e-06 1.07e-06 1.73e-06 1.87e-06 8.88e-07 2.82e-07 4.32e-07 1.16e-06 9.14e-07 7.36e-07 6.94e-07 4.62e-07 6.97e-07 2.33e-07 3.56e-07 2.9e-06 4.79e-07 1.32e-07 3.55e-07 3.46e-07 5.17e-07 2.23e-07 3.01e-07