Genes within 1Mb (chr1:45670549:TAGTTTTA:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 179386 eQTL 3.24e-21 0.146 0.015 0.0 0.0 0.299
ENSG00000079277 MKNK1 -946294 eQTL 2.71e-02 0.0292 0.0132 0.0 0.0 0.299
ENSG00000086015 MAST2 -116438 eQTL 2.21e-24 -0.206 0.0197 0.0 0.0 0.299
ENSG00000117448 AKR1A1 120006 eQTL 1.39e-02 0.0293 0.0119 0.0 0.0 0.299
ENSG00000117461 PIK3R3 -462487 eQTL 3.83e-20 -0.192 0.0204 0.0 0.0 0.299
ENSG00000117480 FAAH -723768 eQTL 4.50e-02 -0.0449 0.0224 0.0 0.0 0.299
ENSG00000132780 NASP 86703 eQTL 4.03e-02 0.0349 0.017 0.0 0.0 0.299
ENSG00000142961 MOB3C -946342 eQTL 8.03e-05 0.0783 0.0198 0.00125 0.0 0.299
ENSG00000159588 CCDC17 46492 eQTL 1.89e-02 -0.0352 0.015 0.0 0.0 0.299
ENSG00000159592 GPBP1L1 -17564 eQTL 8.88e-05 -0.0441 0.0112 0.00121 0.0 0.299
ENSG00000159596 TMEM69 -17632 eQTL 3.20e-16 -0.186 0.0224 0.0 0.0 0.299
ENSG00000197429 IPP -80101 eQTL 4.62e-02 -0.0427 0.0214 0.0 0.0 0.299
ENSG00000225447 RPS15AP10 24352 eQTL 2.75e-20 0.319 0.0338 0.0209 0.0206 0.299
ENSG00000234329 AL604028.2 18723 eQTL 2.54e-43 0.345 0.0237 0.0 0.0 0.299
ENSG00000269956 MKNK1-AS1 -868147 eQTL 3.26e-02 0.0521 0.0243 0.0 0.0 0.299
ENSG00000280670 CCDC163 170470 eQTL 2.97e-05 0.163 0.0389 0.00115 0.0 0.299
ENSG00000281912 LINC01144 366639 eQTL 4.61e-03 -0.101 0.0354 0.0 0.0 0.299


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 179386 2.91e-06 9.52e-07 2.24e-07 1.25e-06 3.71e-07 8e-07 1.38e-06 1.48e-07 1.71e-06 3.28e-07 2.03e-06 7.85e-07 2.68e-06 3e-07 4.43e-07 5.87e-07 9.26e-07 1.13e-06 5.29e-07 1.3e-06 6.18e-07 1.6e-06 1.42e-06 5.53e-07 1.54e-06 3.63e-07 9.28e-07 6.23e-07 1.79e-06 1.31e-06 8.18e-07 4.91e-07 6.12e-07 4.91e-07 5.46e-07 9.68e-07 3.65e-07 4.08e-07 1.71e-07 7.62e-08 1.8e-07 1.71e-06 1.09e-06 1.38e-07 1.61e-07 3.52e-07 2.33e-07 1.38e-07 2.41e-07
ENSG00000086015 MAST2 -116438 1.36e-05 5.75e-06 7.79e-07 3.69e-06 1.76e-06 3.9e-06 7.52e-06 5.6e-07 5.25e-06 1.94e-06 8.97e-06 3.28e-06 1.11e-05 2.06e-06 1.37e-06 2.38e-06 1.97e-06 3.89e-06 1.43e-06 4.27e-06 3.45e-06 5.62e-06 7.37e-06 1.48e-06 4.08e-06 1.33e-06 2.49e-06 1.8e-06 7.09e-06 4.31e-06 3.39e-06 1.61e-06 1.18e-06 1.71e-06 1.97e-06 3.09e-06 1.39e-06 2.71e-06 9.54e-07 3.58e-07 1.03e-06 1.04e-05 3.47e-06 1.5e-07 6.9e-07 2.52e-06 9.51e-07 7.15e-07 1.04e-06
ENSG00000117448 AKR1A1 120006 1.21e-05 5.22e-06 6.35e-07 3.32e-06 1.49e-06 3.4e-06 6.35e-06 4.44e-07 4.72e-06 1.67e-06 8.01e-06 3.38e-06 1.04e-05 2.37e-06 1.26e-06 2e-06 1.78e-06 3.77e-06 1.39e-06 3.93e-06 3.19e-06 5.09e-06 6.81e-06 1.43e-06 3.59e-06 1.32e-06 2.62e-06 1.49e-06 6.74e-06 4.23e-06 2.72e-06 1.64e-06 1.1e-06 1.85e-06 2.04e-06 2.78e-06 1.2e-06 2.61e-06 8.58e-07 3.63e-07 8.78e-07 8.77e-06 3.21e-06 1.56e-07 7.74e-07 2.34e-06 1.07e-06 7.66e-07 9.39e-07
ENSG00000117461 PIK3R3 -462487 2.76e-07 1.1e-07 3.56e-08 1.82e-07 8.92e-08 9.05e-08 1.67e-07 5.21e-08 1.45e-07 4.38e-08 1.62e-07 8.14e-08 1.69e-07 6.21e-08 4.84e-08 7.89e-08 4.48e-08 1.21e-07 5.19e-08 4.45e-08 1.08e-07 1.26e-07 1.39e-07 4.67e-08 1.31e-07 1.15e-07 1.11e-07 8.71e-08 1.16e-07 1.05e-07 9.7e-08 3.89e-08 3.89e-08 8.25e-08 8.87e-08 3.65e-08 4.85e-08 8.61e-08 8.55e-08 3.12e-08 3.66e-08 1.35e-07 3.99e-08 7.23e-09 1.09e-07 1.84e-08 1.26e-07 4.26e-09 5.04e-08
ENSG00000142961 MOB3C -946342 2.66e-07 1.11e-07 3.28e-08 1.67e-07 1.02e-07 9.13e-08 1.39e-07 5.29e-08 1.36e-07 3.99e-08 1.61e-07 7.49e-08 1.23e-07 6.1e-08 4.48e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 2.85e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.03e-07 1.11e-07 8.27e-08 1.03e-07 1.09e-07 9.5e-08 3.19e-08 2.74e-08 8.09e-08 9.88e-08 4.26e-08 4.01e-08 8.78e-08 8.44e-08 3.87e-08 3.31e-08 1.4e-07 4.36e-08 2.49e-08 1.15e-07 1.8e-08 1.5e-07 4.96e-09 4.72e-08
ENSG00000159588 CCDC17 46492 0.000188 6.69e-05 5.89e-06 1.87e-05 5.94e-06 2.64e-05 5.51e-05 2.48e-06 4.17e-05 8.95e-06 7.69e-05 1.65e-05 8.55e-05 1.36e-05 6.45e-06 1.3e-05 1.56e-05 4.08e-05 6.96e-06 2.9e-05 1.23e-05 4.67e-05 9.11e-05 1.29e-05 2.43e-05 6.4e-06 1.13e-05 1.4e-05 6.26e-05 2.17e-05 2.84e-05 7.31e-06 7.01e-06 7.83e-06 1.15e-05 1.11e-05 6.75e-06 1.05e-05 7.95e-06 2.85e-06 2.71e-06 0.000123 1.36e-05 7.37e-07 5.01e-06 1.53e-05 5.87e-06 2.66e-06 3.84e-06
ENSG00000159592 GPBP1L1 -17564 0.000352 0.000268 2.22e-05 7.87e-05 1.63e-05 9.96e-05 0.000248 1.85e-05 0.000188 5e-05 0.000214 6.75e-05 0.000281 5.45e-05 2.93e-05 8.86e-05 7.67e-05 0.000187 3.2e-05 5.32e-05 5.58e-05 0.000177 0.000269 5.31e-05 0.00016 3.93e-05 6.87e-05 4.64e-05 0.000259 8.5e-05 9.99e-05 5.74e-06 1.23e-05 2.84e-05 4.4e-05 3.01e-05 1.15e-05 1.88e-05 1.72e-05 5.94e-06 4.24e-06 0.00041 1.85e-05 2.34e-06 1.4e-05 3.41e-05 2.01e-05 6.14e-06 1.02e-05
ENSG00000159596 TMEM69 -17632 0.000352 0.000268 2.18e-05 7.87e-05 1.57e-05 9.96e-05 0.000248 1.85e-05 0.000188 5e-05 0.000214 6.75e-05 0.000281 5.36e-05 2.9e-05 8.86e-05 7.67e-05 0.000187 3.2e-05 5.32e-05 5.58e-05 0.000177 0.000269 5.31e-05 0.00016 3.93e-05 6.87e-05 4.64e-05 0.000259 8.4e-05 9.99e-05 5.74e-06 1.23e-05 2.84e-05 4.29e-05 3.01e-05 1.15e-05 1.88e-05 1.72e-05 5.87e-06 4.24e-06 0.00041 1.85e-05 2.34e-06 1.4e-05 3.41e-05 2.01e-05 6.14e-06 1.02e-05
ENSG00000225447 RPS15AP10 24352 0.000344 0.000218 1.52e-05 6.14e-05 1.12e-05 8.29e-05 0.000202 1.14e-05 0.000141 3.49e-05 0.000181 5.47e-05 0.000232 4.37e-05 2.24e-05 6.57e-05 6.37e-05 0.000151 2.47e-05 4.41e-05 3.93e-05 0.000146 0.000234 4.28e-05 0.000118 3.1e-05 4.92e-05 3.73e-05 0.00022 7.17e-05 8.19e-05 5.34e-06 1.17e-05 2.06e-05 3.3e-05 2.54e-05 9.6e-06 1.61e-05 1.46e-05 4.67e-06 3.8e-06 0.000362 1.61e-05 1.87e-06 1.05e-05 2.79e-05 1.65e-05 4.96e-06 8.83e-06
ENSG00000234329 AL604028.2 18723 0.000352 0.00026 2.06e-05 7.6e-05 1.47e-05 9.85e-05 0.000243 1.81e-05 0.000184 4.71e-05 0.000207 6.67e-05 0.000274 5.2e-05 2.81e-05 8.58e-05 7.41e-05 0.00018 3.11e-05 5.23e-05 5.3e-05 0.000167 0.000263 5.05e-05 0.000154 3.84e-05 6.57e-05 4.45e-05 0.000256 8.32e-05 9.7e-05 5.59e-06 1.22e-05 2.64e-05 4.17e-05 2.9e-05 1.12e-05 1.83e-05 1.69e-05 5.62e-06 4.18e-06 0.000407 1.8e-05 2.21e-06 1.34e-05 3.28e-05 1.94e-05 5.89e-06 1e-05
ENSG00000269956 MKNK1-AS1 -868147 2.66e-07 1.11e-07 3.28e-08 1.68e-07 1.02e-07 9.36e-08 1.42e-07 5.29e-08 1.37e-07 3.99e-08 1.61e-07 7.6e-08 1.23e-07 6.07e-08 4.77e-08 7.76e-08 5.15e-08 1.06e-07 5.12e-08 3.15e-08 1.03e-07 1.31e-07 1.31e-07 5.19e-08 1.33e-07 1.03e-07 1.11e-07 8.49e-08 1.03e-07 1.1e-07 9.75e-08 3.19e-08 2.74e-08 8.09e-08 9.69e-08 4.19e-08 4.01e-08 8.91e-08 8.44e-08 3.87e-08 3.31e-08 1.39e-07 4.12e-08 3.06e-08 1.15e-07 1.8e-08 1.5e-07 4.82e-09 4.72e-08
ENSG00000280670 CCDC163 170470 3.99e-06 1.08e-06 2.29e-07 1.25e-06 4.22e-07 7.73e-07 1.3e-06 2.06e-07 1.68e-06 3.99e-07 2.05e-06 1.01e-06 3.28e-06 2.98e-07 4.61e-07 7.78e-07 9.36e-07 1.33e-06 7.7e-07 1.18e-06 7.75e-07 1.89e-06 1.78e-06 6.37e-07 1.85e-06 4.31e-07 1.03e-06 7.03e-07 1.71e-06 1.36e-06 7.46e-07 4.46e-07 7.09e-07 6.99e-07 5.27e-07 9.54e-07 5.12e-07 4.72e-07 3.6e-07 2.46e-07 2.85e-07 2.22e-06 1.35e-06 1.74e-07 1.65e-07 5.34e-07 2.74e-07 2.54e-07 1.58e-07