Genes within 1Mb (chr1:45620657:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000086015 MAST2 -166330 eQTL 3.35e-20 0.383 0.0406 0.0133 0.0136 0.0525
ENSG00000117425 PTCH2 777404 eQTL 1.98e-02 0.119 0.0509 0.0 0.0 0.0525
ENSG00000117448 AKR1A1 70114 eQTL 2.31e-02 -0.0552 0.0243 0.0 0.0 0.0525
ENSG00000117461 PIK3R3 -512379 eQTL 2.34e-02 -0.0987 0.0435 0.0 0.0 0.0525
ENSG00000126088 UROD 609707 pQTL 1.14e-04 0.125 0.0322 0.0 0.0 0.0513
ENSG00000126088 UROD 609707 eQTL 1.49e-02 0.109 0.0447 0.0 0.0 0.0525
ENSG00000126106 TMEM53 946176 eQTL 4.98e-02 0.109 0.0556 0.0 0.0 0.0525
ENSG00000132773 TOE1 280605 eQTL 2.64e-02 -0.0634 0.0285 0.0 0.0 0.0525
ENSG00000132780 NASP 36811 eQTL 4.80e-12 -0.238 0.0339 0.0327 0.0318 0.0525
ENSG00000159588 CCDC17 -3400 eQTL 6.40e-25 -0.307 0.029 0.0 0.0 0.0525
ENSG00000159592 GPBP1L1 -67456 eQTL 6.72e-03 0.0625 0.023 0.0 0.0 0.0525
ENSG00000162415 ZSWIM5 314448 eQTL 4.74e-02 -0.0897 0.0452 0.0 0.0 0.0525
ENSG00000197429 IPP -129993 eQTL 1.29e-02 -0.109 0.0437 0.0 0.0 0.0525
ENSG00000222009 BTBD19 812175 eQTL 3.58e-05 -0.131 0.0315 0.0 0.0 0.0525
ENSG00000225447 RPS15AP10 -25540 eQTL 3.36e-02 -0.153 0.072 0.0 0.0 0.0525
ENSG00000232022 FAAHP1 -811472 eQTL 7.05e-03 -0.174 0.0643 0.001 0.0 0.0525
ENSG00000234329 AL604028.2 -31169 eQTL 3.13e-04 -0.193 0.0532 0.0 0.0 0.0525
ENSG00000281912 LINC01144 316747 eQTL 6.03e-04 0.248 0.0722 0.0 0.0 0.0525


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000086015 MAST2 -166330 4.19e-06 4.77e-06 4.93e-07 2.42e-06 7.73e-07 1.07e-06 3e-06 9.07e-07 3.65e-06 1.67e-06 4.33e-06 3.2e-06 7.42e-06 2.17e-06 1.07e-06 2.21e-06 1.57e-06 2.37e-06 1.59e-06 1.1e-06 1.4e-06 3.96e-06 3.24e-06 1.32e-06 4.77e-06 1.28e-06 2.35e-06 1.48e-06 3.82e-06 3.1e-06 1.94e-06 3.45e-07 5.88e-07 1.43e-06 1.91e-06 9.53e-07 8.38e-07 4.66e-07 1.24e-06 3.82e-07 3.04e-07 5.18e-06 4.35e-07 1.6e-07 3.46e-07 3.96e-07 8.28e-07 2.63e-07 3.4e-07
ENSG00000117425 PTCH2 777404 2.95e-07 1.42e-07 5.14e-08 2.24e-07 1.01e-07 8.33e-08 1.9e-07 5.53e-08 1.5e-07 6.08e-08 1.62e-07 1.19e-07 1.71e-07 8.13e-08 5.98e-08 7.23e-08 4.01e-08 1.51e-07 6.75e-08 4.89e-08 1.25e-07 1.25e-07 1.58e-07 2.79e-08 1.68e-07 1.26e-07 1.17e-07 1.01e-07 1.22e-07 1.06e-07 1.06e-07 2.99e-08 3.46e-08 8.23e-08 3.63e-08 3.22e-08 5.65e-08 9.17e-08 6.58e-08 4.55e-08 5.14e-08 1.46e-07 3.02e-08 7.18e-09 2.64e-08 1.77e-08 1.18e-07 1.96e-09 4.97e-08
ENSG00000117448 AKR1A1 70114 7.96e-06 1.02e-05 1.32e-06 5.09e-06 2.04e-06 4.1e-06 1.04e-05 1.86e-06 8.69e-06 4.62e-06 1.19e-05 5.06e-06 1.5e-05 3.74e-06 2.23e-06 6.06e-06 3.84e-06 5.96e-06 2.29e-06 2.65e-06 3.97e-06 8.12e-06 6.94e-06 2.04e-06 1.24e-05 2.82e-06 4.87e-06 3.33e-06 9.05e-06 7.83e-06 5.14e-06 5.67e-07 9.22e-07 2.79e-06 3.58e-06 2.09e-06 1.27e-06 1.46e-06 1.6e-06 9.79e-07 6.37e-07 1.25e-05 1.42e-06 1.58e-07 7.65e-07 1.22e-06 8.95e-07 6.58e-07 4.67e-07
ENSG00000126088 UROD 609707 4.89e-07 2.56e-07 6.42e-08 2.87e-07 1.1e-07 1.25e-07 3.42e-07 6.2e-08 2.04e-07 1.15e-07 2.98e-07 1.96e-07 3.48e-07 8.85e-08 7.35e-08 1.06e-07 5.42e-08 2.56e-07 7.76e-08 7.05e-08 1.33e-07 2.06e-07 2e-07 3.27e-08 2.99e-07 1.71e-07 1.48e-07 1.46e-07 1.44e-07 2.1e-07 1.76e-07 4.43e-08 4.93e-08 9.5e-08 6.87e-08 5.04e-08 5.76e-08 5.71e-08 5.27e-08 7.04e-08 6e-08 2.5e-07 2.63e-08 1.87e-08 6.59e-08 1.01e-08 7e-08 0.0 5.56e-08
ENSG00000132780 NASP 36811 1.34e-05 1.62e-05 2.54e-06 8.67e-06 2.32e-06 6.03e-06 2.01e-05 2.44e-06 1.41e-05 6.67e-06 1.87e-05 6.83e-06 2.73e-05 5.8e-06 4.5e-06 9e-06 7.11e-06 1.13e-05 3.64e-06 3.53e-06 6.48e-06 1.35e-05 1.31e-05 3.69e-06 2.28e-05 4.65e-06 7.58e-06 5.97e-06 1.59e-05 1.28e-05 1.01e-05 1.02e-06 1.3e-06 3.64e-06 5.89e-06 2.85e-06 1.79e-06 2.11e-06 2.42e-06 1.84e-06 1e-06 1.93e-05 2.39e-06 1.95e-07 9.34e-07 1.95e-06 1.98e-06 6.88e-07 6.34e-07
ENSG00000159588 CCDC17 -3400 5.95e-05 5.25e-05 1.31e-05 2.54e-05 1.18e-05 2.67e-05 7.63e-05 1.02e-05 6.56e-05 3.62e-05 8.46e-05 3.68e-05 8.9e-05 2.84e-05 1.45e-05 4.56e-05 3.78e-05 4.93e-05 1.52e-05 1.54e-05 3.29e-05 7.18e-05 5.48e-05 1.85e-05 8.19e-05 2.18e-05 3.07e-05 3.1e-05 5.62e-05 4.8e-05 4.32e-05 4.83e-06 7.51e-06 1.34e-05 2.11e-05 1.14e-05 6.75e-06 7.45e-06 1.06e-05 5.76e-06 3.02e-06 5.87e-05 6.26e-06 1.09e-06 6.11e-06 9.38e-06 9.18e-06 4.93e-06 3.37e-06
ENSG00000159592 GPBP1L1 -67456 8.31e-06 1.08e-05 1.23e-06 5.08e-06 2.12e-06 3.86e-06 1.04e-05 1.96e-06 9.16e-06 4.81e-06 1.24e-05 5.16e-06 1.58e-05 3.72e-06 2.36e-06 6.42e-06 3.91e-06 6.32e-06 2.54e-06 2.69e-06 4.51e-06 8.59e-06 6.98e-06 2.27e-06 1.26e-05 2.89e-06 4.86e-06 3.43e-06 9.57e-06 7.8e-06 5.42e-06 5.74e-07 1.05e-06 2.77e-06 3.7e-06 2.04e-06 1.33e-06 1.66e-06 1.62e-06 1.01e-06 6.7e-07 1.28e-05 1.43e-06 1.61e-07 6.7e-07 1.32e-06 9.12e-07 7.11e-07 4.19e-07
ENSG00000222009 BTBD19 812175 2.77e-07 1.36e-07 4.69e-08 2.09e-07 9.24e-08 9.05e-08 1.73e-07 5.48e-08 1.45e-07 5.67e-08 1.67e-07 1.11e-07 1.59e-07 7.95e-08 6.18e-08 7.5e-08 4.17e-08 1.4e-07 6.32e-08 4.3e-08 1.22e-07 1.24e-07 1.5e-07 2.64e-08 1.63e-07 1.25e-07 1.18e-07 9.92e-08 1.2e-07 1.05e-07 1.07e-07 3.1e-08 3.21e-08 8e-08 5.99e-08 3.05e-08 5.3e-08 8.76e-08 6.57e-08 3.92e-08 5.13e-08 1.46e-07 3.35e-08 1.43e-08 3.41e-08 1.89e-08 1.22e-07 1.92e-09 4.83e-08
ENSG00000234329 AL604028.2 -31169 1.47e-05 1.9e-05 2.86e-06 9.74e-06 2.55e-06 6.55e-06 2.25e-05 3.01e-06 1.63e-05 7.65e-06 2.08e-05 7.7e-06 3.06e-05 7.1e-06 5.1e-06 9.51e-06 8.15e-06 1.24e-05 4.15e-06 4.22e-06 7.22e-06 1.6e-05 1.54e-05 4.28e-06 2.54e-05 5.1e-06 8e-06 6.91e-06 1.78e-05 1.49e-05 1.14e-05 9.64e-07 1.38e-06 4.09e-06 6.5e-06 3.37e-06 1.79e-06 2.4e-06 2.84e-06 2.1e-06 9.48e-07 2.19e-05 2.55e-06 2.03e-07 1.15e-06 2.34e-06 2.32e-06 8.94e-07 8.3e-07
ENSG00000281912 LINC01144 316747 1.28e-06 1.24e-06 3.2e-07 1.27e-06 2.95e-07 6.38e-07 1.52e-06 3.44e-07 1.49e-06 4.44e-07 2.01e-06 8.32e-07 2.46e-06 2.98e-07 5.17e-07 8.62e-07 7.93e-07 7e-07 7.25e-07 6.82e-07 4.57e-07 1.6e-06 8.53e-07 6.28e-07 2.27e-06 4.36e-07 9.62e-07 7.19e-07 1.31e-06 1.29e-06 7.64e-07 1.29e-07 2.45e-07 5.18e-07 5.93e-07 4.42e-07 4.73e-07 2.38e-07 3.34e-07 2.65e-07 1.98e-07 1.63e-06 3.01e-07 1.3e-07 2.25e-07 1.22e-07 2.1e-07 5.39e-08 2.61e-07