Genes within 1Mb (chr1:45620616:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000086015 MAST2 -166371 eQTL 4.83e-20 0.384 0.041 0.0108 0.0114 0.0515
ENSG00000117425 PTCH2 777363 eQTL 9.69e-03 0.133 0.0513 0.00109 0.0 0.0515
ENSG00000117448 AKR1A1 70073 eQTL 1.80e-02 -0.058 0.0245 0.0 0.0 0.0515
ENSG00000117461 PIK3R3 -512420 eQTL 3.38e-02 -0.0932 0.0438 0.0 0.0 0.0515
ENSG00000126088 UROD 609666 pQTL 1.52e-04 0.123 0.0324 0.0 0.0 0.0506
ENSG00000126088 UROD 609666 eQTL 6.61e-03 0.123 0.045 0.0 0.0 0.0515
ENSG00000132773 TOE1 280564 eQTL 1.84e-02 -0.0679 0.0288 0.0 0.0 0.0515
ENSG00000132780 NASP 36770 eQTL 2.29e-11 -0.232 0.0343 0.00647 0.00668 0.0515
ENSG00000159588 CCDC17 -3441 eQTL 9.13e-25 -0.309 0.0292 0.0 0.0 0.0515
ENSG00000159592 GPBP1L1 -67497 eQTL 5.22e-03 0.0649 0.0232 0.0 0.0 0.0515
ENSG00000162415 ZSWIM5 314407 eQTL 3.30e-02 -0.0972 0.0455 0.0 0.0 0.0515
ENSG00000197429 IPP -130034 eQTL 1.04e-02 -0.113 0.044 0.0 0.0 0.0515
ENSG00000222009 BTBD19 812134 eQTL 1.01e-04 -0.124 0.0318 0.0 0.0 0.0515
ENSG00000225447 RPS15AP10 -25581 eQTL 3.53e-02 -0.153 0.0726 0.0 0.0 0.0515
ENSG00000232022 FAAHP1 -811513 eQTL 5.25e-03 -0.181 0.0648 0.00121 0.0 0.0515
ENSG00000234329 AL604028.2 -31210 eQTL 1.26e-03 -0.174 0.0537 0.0 0.0 0.0515
ENSG00000281912 LINC01144 316706 eQTL 4.05e-04 0.258 0.0727 0.0 0.0 0.0515


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000086015 MAST2 -166371 5.13e-06 5.32e-06 7.29e-07 3.51e-06 1.59e-06 1.56e-06 6.05e-06 1.11e-06 4.83e-06 2.95e-06 6.67e-06 3.37e-06 7.83e-06 1.8e-06 1.11e-06 3.69e-06 1.89e-06 3.98e-06 1.57e-06 1.18e-06 2.79e-06 5.15e-06 4.59e-06 1.35e-06 7.74e-06 1.99e-06 2.31e-06 1.78e-06 4.56e-06 4.25e-06 2.58e-06 4.03e-07 6.5e-07 1.46e-06 2.07e-06 1.16e-06 1e-06 4.71e-07 8.5e-07 5.62e-07 4.72e-07 6.25e-06 5.26e-07 1.68e-07 5.94e-07 1.19e-06 1.03e-06 6.45e-07 4.68e-07
ENSG00000117425 PTCH2 777363 3.53e-07 1.83e-07 6.42e-08 2.54e-07 1.08e-07 1.13e-07 2.63e-07 6.75e-08 1.86e-07 1.05e-07 2.04e-07 1.46e-07 2.55e-07 8.44e-08 6.12e-08 9.11e-08 5.57e-08 2.33e-07 7.11e-08 6.02e-08 1.39e-07 1.89e-07 1.69e-07 4.27e-08 2.37e-07 1.65e-07 1.29e-07 1.42e-07 1.36e-07 1.36e-07 1.27e-07 4.77e-08 4.97e-08 9.5e-08 1.01e-07 3.94e-08 5.45e-08 5.71e-08 5.95e-08 8.34e-08 5.1e-08 1.62e-07 3.02e-08 1.94e-08 4.99e-08 8.24e-09 7.61e-08 0.0 4.61e-08
ENSG00000117448 AKR1A1 70073 1.24e-05 1.38e-05 2.41e-06 8.26e-06 2.42e-06 5.83e-06 1.69e-05 2.48e-06 1.37e-05 6.27e-06 1.75e-05 6.72e-06 2.3e-05 4.75e-06 4.14e-06 7.72e-06 6.8e-06 1.07e-05 3.55e-06 3.24e-06 6.66e-06 1.26e-05 1.14e-05 3.69e-06 2.11e-05 4.65e-06 7.19e-06 5.45e-06 1.44e-05 1.05e-05 8.79e-06 9.88e-07 1.23e-06 3.58e-06 5.86e-06 2.84e-06 1.79e-06 2.12e-06 2.03e-06 1.42e-06 9.34e-07 1.65e-05 1.69e-06 2.52e-07 9.29e-07 2.14e-06 1.94e-06 6.88e-07 4.78e-07
ENSG00000126088 UROD 609666 7.57e-07 4.78e-07 9.16e-08 3.81e-07 1.06e-07 1.97e-07 4.68e-07 1.21e-07 3.17e-07 2.01e-07 4.97e-07 2.98e-07 6e-07 1.07e-07 1.45e-07 1.61e-07 2.11e-07 3.58e-07 1.7e-07 9.17e-08 1.92e-07 3.1e-07 2.67e-07 1.17e-07 5.15e-07 2.46e-07 1.97e-07 2.18e-07 2.84e-07 3.39e-07 2.31e-07 7.6e-08 4.74e-08 1.19e-07 3.05e-07 8.75e-08 1.18e-07 9.33e-08 4.04e-08 2.53e-08 4.36e-08 3.66e-07 2.67e-08 1.24e-08 1.16e-07 1.33e-08 9.83e-08 1.13e-08 5.13e-08
ENSG00000132780 NASP 36770 2.02e-05 2.41e-05 3.79e-06 1.28e-05 3.55e-06 9.53e-06 2.95e-05 3.73e-06 2.12e-05 1.04e-05 2.78e-05 1.02e-05 3.72e-05 9.29e-06 5.5e-06 1.14e-05 1.07e-05 1.75e-05 6.02e-06 5.17e-06 9.48e-06 2.18e-05 2.05e-05 5.86e-06 3.21e-05 5.77e-06 8.89e-06 9e-06 2.28e-05 1.7e-05 1.39e-05 1.41e-06 1.92e-06 5.08e-06 8.98e-06 4.4e-06 2.31e-06 2.81e-06 3.56e-06 2.69e-06 1.58e-06 2.65e-05 2.67e-06 3.6e-07 1.97e-06 2.96e-06 3.42e-06 1.43e-06 1.3e-06
ENSG00000159588 CCDC17 -3441 5.86e-05 5.32e-05 1.09e-05 2.34e-05 1.05e-05 2.41e-05 7.39e-05 1.04e-05 6.17e-05 3.42e-05 7.95e-05 3.25e-05 8.98e-05 2.66e-05 1.32e-05 4.11e-05 3.26e-05 4.69e-05 1.4e-05 1.42e-05 3.05e-05 6.52e-05 5.33e-05 1.67e-05 8.07e-05 1.84e-05 2.82e-05 2.61e-05 5.59e-05 4.34e-05 4.06e-05 4.02e-06 6.67e-06 1.21e-05 1.96e-05 1.03e-05 6.11e-06 6.9e-06 9.18e-06 5.27e-06 2.59e-06 5.85e-05 6e-06 9.15e-07 6.1e-06 9.01e-06 8.89e-06 4.11e-06 3.28e-06
ENSG00000159592 GPBP1L1 -67497 1.25e-05 1.45e-05 2.44e-06 8.45e-06 2.27e-06 5.91e-06 1.81e-05 2.53e-06 1.41e-05 6.62e-06 1.79e-05 6.87e-06 2.39e-05 5.19e-06 4.18e-06 8.06e-06 7.09e-06 1.12e-05 3.6e-06 3.39e-06 6.47e-06 1.28e-05 1.19e-05 3.73e-06 2.21e-05 4.58e-06 7.44e-06 5.64e-06 1.48e-05 1.08e-05 9.27e-06 1.06e-06 1.33e-06 3.64e-06 6.01e-06 2.78e-06 1.78e-06 2.18e-06 2.06e-06 1.5e-06 9.4e-07 1.7e-05 1.82e-06 2.52e-07 9.29e-07 2.35e-06 2e-06 7.3e-07 5.34e-07
ENSG00000173660 \N -683082 5.14e-07 2.88e-07 7.6e-08 3.19e-07 1.09e-07 1.54e-07 3.44e-07 8.17e-08 2.35e-07 1.39e-07 3.25e-07 1.91e-07 4.11e-07 8.55e-08 9.2e-08 1.14e-07 9.3e-08 2.93e-07 9.97e-08 7.49e-08 1.65e-07 2.3e-07 2.04e-07 5.11e-08 3.41e-07 2.01e-07 1.48e-07 1.7e-07 1.87e-07 2e-07 1.78e-07 5.22e-08 5.75e-08 1.03e-07 2.32e-07 5.41e-08 7.97e-08 6.89e-08 4.99e-08 5.64e-08 4.51e-08 2.6e-07 3.14e-08 5.54e-09 8.43e-08 1.75e-08 9.26e-08 2.85e-09 5.71e-08
ENSG00000222009 BTBD19 812134 3.21e-07 1.67e-07 6.28e-08 2.43e-07 1.07e-07 9.31e-08 2.24e-07 6.2e-08 1.71e-07 9.72e-08 1.83e-07 1.31e-07 2.38e-07 8.07e-08 5.62e-08 8.71e-08 4.63e-08 2.04e-07 7.42e-08 5.75e-08 1.33e-07 1.7e-07 1.64e-07 3.59e-08 2.17e-07 1.51e-07 1.22e-07 1.28e-07 1.39e-07 1.17e-07 1.22e-07 4.4e-08 4.34e-08 9.08e-08 6.98e-08 3.36e-08 6.14e-08 6.78e-08 6.33e-08 7.65e-08 6.14e-08 1.59e-07 3.35e-08 1.86e-08 4e-08 1.01e-08 8.67e-08 2.23e-09 4.55e-08
ENSG00000234329 AL604028.2 -31210 2.34e-05 2.65e-05 4.26e-06 1.35e-05 4.03e-06 1.1e-05 3.31e-05 3.86e-06 2.39e-05 1.19e-05 3.08e-05 1.19e-05 3.96e-05 1.06e-05 5.88e-06 1.27e-05 1.22e-05 1.96e-05 6.6e-06 5.4e-06 1.04e-05 2.44e-05 2.34e-05 6.63e-06 3.46e-05 6.14e-06 1.01e-05 9.63e-06 2.54e-05 1.89e-05 1.59e-05 1.67e-06 2.24e-06 5.59e-06 9.41e-06 4.56e-06 2.6e-06 2.97e-06 3.71e-06 2.92e-06 1.64e-06 2.92e-05 2.65e-06 3.62e-07 2.01e-06 3.32e-06 3.59e-06 1.49e-06 1.36e-06
ENSG00000281912 LINC01144 316706 1.64e-06 1.95e-06 2.29e-07 1.37e-06 3.92e-07 6.97e-07 1.19e-06 3.83e-07 1.72e-06 6.9e-07 1.97e-06 1.15e-06 2.61e-06 4.13e-07 4.37e-07 1.01e-06 1.07e-06 1.16e-06 5.83e-07 4.68e-07 6.34e-07 1.92e-06 1.09e-06 5.73e-07 2.35e-06 8.55e-07 1.01e-06 1.01e-06 1.65e-06 1.3e-06 7.35e-07 2.63e-07 3.56e-07 5.96e-07 8.35e-07 5.42e-07 7.24e-07 3.26e-07 5.05e-07 2.09e-07 2.82e-07 2.07e-06 3.7e-07 1.99e-07 3.73e-07 3.21e-07 2.28e-07 1.71e-07 2.91e-07