Genes within 1Mb (chr1:45615750:C:G):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 124587 eQTL 1.34e-24 -0.151 0.0144 0.0 0.0 0.362
ENSG00000086015 MAST2 -171237 eQTL 2.45e-07 0.103 0.0198 0.0 0.0 0.362
ENSG00000117461 PIK3R3 -517286 eQTL 5.77e-23 0.198 0.0195 0.0 0.0 0.362
ENSG00000117481 NSUN4 -724427 eQTL 1.42e-03 -0.0788 0.0246 0.0 0.0 0.362
ENSG00000126088 UROD 604800 pQTL 3.52e-02 -0.0309 0.0147 0.0 0.0 0.355
ENSG00000126088 UROD 604800 eQTL 4.15e-02 -0.0431 0.0211 0.0 0.0 0.362
ENSG00000132781 MUTYH 275280 eQTL 4.51e-02 -0.0268 0.0134 0.0 0.0 0.362
ENSG00000159588 CCDC17 -8307 eQTL 1.13e-16 0.118 0.0139 0.00381 0.00348 0.362
ENSG00000159592 GPBP1L1 -72363 eQTL 1.66e-02 0.026 0.0108 0.0 0.0 0.362
ENSG00000159596 TMEM69 -72431 eQTL 1.09e-14 0.17 0.0216 0.0 0.0 0.362
ENSG00000162415 ZSWIM5 309541 eQTL 4.02e-02 0.0438 0.0213 0.0 0.0 0.362
ENSG00000197429 IPP -134900 eQTL 1.09e-03 0.0673 0.0205 0.0 0.0 0.362
ENSG00000225447 RPS15AP10 -30447 eQTL 2.48e-13 -0.245 0.0331 0.0 0.0 0.362
ENSG00000230896 AL604028.1 -81325 eQTL 2.31e-02 0.0873 0.0384 0.001 0.0 0.362
ENSG00000234329 AL604028.2 -36076 eQTL 2.64e-32 -0.288 0.0235 0.0 0.0 0.362
ENSG00000269956 MKNK1-AS1 -922946 eQTL 3.73e-02 -0.0489 0.0234 0.0 0.0 0.362
ENSG00000280670 CCDC163 115671 eQTL 7.44e-05 -0.149 0.0375 0.0 0.0 0.362


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 124587 6.3e-06 9.35e-06 1.35e-06 4.51e-06 1.96e-06 2.76e-06 9.73e-06 1.55e-06 6.66e-06 4.19e-06 1.03e-05 4.99e-06 1.16e-05 3.89e-06 1.76e-06 5.84e-06 3.76e-06 4.58e-06 2.18e-06 2.53e-06 3.52e-06 7.71e-06 5.93e-06 2.15e-06 1.2e-05 2.4e-06 4.49e-06 2.81e-06 7.09e-06 7.77e-06 4.35e-06 7.97e-07 6.66e-07 2.77e-06 3.49e-06 1.78e-06 1.43e-06 1.66e-06 1.41e-06 9.96e-07 8.6e-07 9.58e-06 1.4e-06 1.38e-07 7.96e-07 1.31e-06 1.16e-06 6.46e-07 5.64e-07
ENSG00000086015 MAST2 -171237 4.57e-06 5.38e-06 6.65e-07 3.42e-06 1.64e-06 1.7e-06 5.17e-06 1.11e-06 5e-06 2.67e-06 6.19e-06 3.33e-06 8.24e-06 1.76e-06 1.21e-06 4.09e-06 1.92e-06 3.82e-06 1.54e-06 1.28e-06 3.1e-06 4.75e-06 4.56e-06 1.34e-06 8.15e-06 1.72e-06 2.39e-06 1.6e-06 4.58e-06 4.42e-06 2.62e-06 4.18e-07 5.29e-07 1.59e-06 2.01e-06 9.71e-07 1.09e-06 4.36e-07 9.68e-07 5.49e-07 4.69e-07 6.09e-06 7.18e-07 1.52e-07 5.95e-07 1.25e-06 1.17e-06 5.83e-07 4.23e-07
ENSG00000117461 PIK3R3 -517286 9.36e-07 7.56e-07 2.15e-07 4.4e-07 1.1e-07 2.64e-07 6.02e-07 1.65e-07 5.74e-07 2.87e-07 9.73e-07 5.48e-07 1.2e-06 1.54e-07 3.15e-07 3.68e-07 5.34e-07 4.16e-07 2.87e-07 1.97e-07 1.97e-07 5.11e-07 3.69e-07 2.27e-07 1.35e-06 2.55e-07 4.62e-07 2.83e-07 4.15e-07 7.42e-07 3.81e-07 5.62e-08 5.78e-08 1.75e-07 3.55e-07 1.28e-07 1.12e-07 1.06e-07 6.29e-08 2.2e-08 7.96e-08 6.81e-07 6.17e-08 5.8e-09 1.27e-07 2.07e-08 1.13e-07 1.28e-08 6.03e-08
ENSG00000132128 \N -687858 3.92e-07 2.67e-07 8.9e-08 2.48e-07 1.06e-07 1.13e-07 3.25e-07 7.56e-08 2.04e-07 1.37e-07 2.84e-07 2.33e-07 4.88e-07 8.42e-08 9.2e-08 1.39e-07 8.53e-08 2.66e-07 9.71e-08 8.31e-08 1.23e-07 2.3e-07 1.73e-07 4.91e-08 4.11e-07 1.65e-07 1.74e-07 1.48e-07 1.48e-07 2.01e-07 1.78e-07 5.01e-08 4.87e-08 9.81e-08 8.75e-08 4.6e-08 5.45e-08 6.78e-08 5.84e-08 8.06e-08 5.04e-08 2.43e-07 1.6e-08 1.98e-08 3.66e-08 8.07e-09 9.1e-08 0.0 4.97e-08
ENSG00000132780 \N 31904 1.98e-05 2.43e-05 4.1e-06 1.29e-05 3.92e-06 9.27e-06 3.06e-05 3.71e-06 2.05e-05 1.02e-05 2.71e-05 1.16e-05 3.59e-05 1.05e-05 5.66e-06 1.22e-05 1.14e-05 1.84e-05 5.89e-06 5.35e-06 9.77e-06 2.26e-05 2.24e-05 6.49e-06 3.29e-05 5.57e-06 9.09e-06 9e-06 2.25e-05 1.99e-05 1.34e-05 1.65e-06 2.07e-06 5.81e-06 8.98e-06 4.54e-06 2.27e-06 2.85e-06 3.56e-06 2.82e-06 1.63e-06 2.84e-05 2.79e-06 2.62e-07 1.98e-06 2.96e-06 3.46e-06 1.31e-06 1.11e-06
ENSG00000132781 MUTYH 275280 1.92e-06 2.44e-06 3.67e-07 1.7e-06 4.37e-07 7.75e-07 1.31e-06 5.78e-07 1.7e-06 8.05e-07 2.12e-06 1.34e-06 3.25e-06 1.13e-06 5.7e-07 1.52e-06 1.06e-06 1.72e-06 7.68e-07 1.13e-06 6.56e-07 2.61e-06 1.77e-06 1.02e-06 3.44e-06 1.01e-06 1.29e-06 1.37e-06 1.7e-06 1.79e-06 1.55e-06 2.62e-07 4e-07 1.2e-06 9.03e-07 6.58e-07 7.42e-07 4.1e-07 5.47e-07 3.35e-07 3.57e-07 2.84e-06 6.38e-07 1.98e-07 3.71e-07 2.95e-07 6.73e-07 2.65e-07 2.4e-07
ENSG00000159588 CCDC17 -8307 3.12e-05 3.04e-05 6.07e-06 1.55e-05 5.74e-06 1.37e-05 4.36e-05 4.5e-06 2.85e-05 1.44e-05 3.52e-05 1.65e-05 4.6e-05 1.35e-05 6.95e-06 1.73e-05 1.63e-05 2.41e-05 7.62e-06 7.1e-06 1.45e-05 3.08e-05 2.99e-05 9.45e-06 4.15e-05 7.55e-06 1.3e-05 1.19e-05 3.05e-05 2.85e-05 1.83e-05 1.64e-06 2.75e-06 7.41e-06 1.15e-05 5.85e-06 3.11e-06 3.14e-06 4.84e-06 3.56e-06 1.67e-06 3.61e-05 3.63e-06 3.6e-07 2.49e-06 3.84e-06 4.07e-06 1.55e-06 1.52e-06
ENSG00000159596 TMEM69 -72431 1.08e-05 1.39e-05 2.32e-06 8.32e-06 2.27e-06 5.43e-06 1.53e-05 2.33e-06 1.27e-05 6.13e-06 1.66e-05 6.84e-06 2.13e-05 5.17e-06 3.97e-06 8.18e-06 6.78e-06 1.04e-05 3.2e-06 3.3e-06 6.79e-06 1.21e-05 1.17e-05 3.58e-06 2.21e-05 4.48e-06 7.34e-06 5.32e-06 1.37e-05 1.12e-05 8.36e-06 1.06e-06 1.18e-06 3.64e-06 5.84e-06 2.85e-06 1.79e-06 2.16e-06 2.13e-06 1.73e-06 1.11e-06 1.69e-05 2.34e-06 2.27e-07 9.34e-07 2.15e-06 2.02e-06 6.85e-07 4.59e-07
ENSG00000162415 ZSWIM5 309541 1.38e-06 2.2e-06 2.51e-07 1.27e-06 4.2e-07 6.56e-07 1.26e-06 3.78e-07 1.7e-06 7.21e-07 1.94e-06 1.47e-06 3.07e-06 5.4e-07 3.41e-07 1.1e-06 1.12e-06 1.16e-06 5.4e-07 6.08e-07 7.41e-07 1.96e-06 1.19e-06 6.86e-07 2.55e-06 7.45e-07 1.14e-06 9.59e-07 1.69e-06 1.46e-06 7.57e-07 2.63e-07 3.24e-07 6.11e-07 7.57e-07 5.41e-07 6.85e-07 3.27e-07 4.57e-07 2.26e-07 2.8e-07 2.2e-06 4.93e-07 1.74e-07 3.04e-07 3.28e-07 3.99e-07 1.44e-07 2.75e-07
ENSG00000225447 RPS15AP10 -30447 2.06e-05 2.45e-05 4.24e-06 1.31e-05 4e-06 9.53e-06 3.16e-05 3.72e-06 2.12e-05 1.03e-05 2.78e-05 1.2e-05 3.65e-05 1.06e-05 5.81e-06 1.25e-05 1.19e-05 1.89e-05 5.99e-06 5.35e-06 9.95e-06 2.31e-05 2.29e-05 6.63e-06 3.35e-05 5.77e-06 9.38e-06 9e-06 2.33e-05 2.03e-05 1.38e-05 1.65e-06 2.21e-06 5.98e-06 9.03e-06 4.51e-06 2.29e-06 2.86e-06 3.63e-06 2.84e-06 1.67e-06 2.9e-05 2.81e-06 2.62e-07 1.92e-06 2.97e-06 3.64e-06 1.35e-06 1.23e-06
ENSG00000230896 AL604028.1 -81325 9.93e-06 1.25e-05 1.89e-06 7.6e-06 2.35e-06 4.92e-06 1.25e-05 2.18e-06 1.09e-05 5.48e-06 1.5e-05 6.55e-06 1.86e-05 4.46e-06 3.58e-06 7.22e-06 6.1e-06 9.58e-06 2.98e-06 3.17e-06 6.18e-06 1.1e-05 1.02e-05 3.31e-06 1.98e-05 4.51e-06 6.81e-06 4.85e-06 1.24e-05 9.87e-06 7.54e-06 1.04e-06 1.11e-06 3.61e-06 5.42e-06 2.86e-06 1.83e-06 2.04e-06 2.16e-06 1.42e-06 9.45e-07 1.51e-05 1.87e-06 1.96e-07 7.57e-07 1.89e-06 1.94e-06 8.24e-07 4.73e-07
ENSG00000234329 AL604028.2 -36076 1.77e-05 2.26e-05 3.64e-06 1.26e-05 3.64e-06 8.57e-06 2.77e-05 3.67e-06 1.94e-05 9.71e-06 2.55e-05 1.08e-05 3.42e-05 9.56e-06 5.36e-06 1.15e-05 1.07e-05 1.74e-05 5.39e-06 5.18e-06 9.45e-06 2.09e-05 2.09e-05 5.93e-06 3.17e-05 5.31e-06 8.52e-06 8.34e-06 2.1e-05 1.85e-05 1.28e-05 1.58e-06 1.89e-06 5.43e-06 8.57e-06 4.37e-06 2.05e-06 2.76e-06 3.33e-06 2.69e-06 1.67e-06 2.67e-05 2.72e-06 2.66e-07 1.93e-06 2.75e-06 3.36e-06 1.24e-06 1.06e-06
ENSG00000269956 MKNK1-AS1 -922946 2.76e-07 1.33e-07 6.15e-08 1.97e-07 1.01e-07 9.48e-08 1.67e-07 5.43e-08 1.45e-07 6.08e-08 1.73e-07 1.2e-07 2.05e-07 7.37e-08 5.98e-08 7.97e-08 4.24e-08 1.44e-07 6.92e-08 4.89e-08 1.19e-07 1.26e-07 1.45e-07 2.87e-08 1.85e-07 1.25e-07 1.12e-07 9.92e-08 1.2e-07 9.88e-08 1.07e-07 3.08e-08 3.43e-08 8.56e-08 5.64e-08 3.04e-08 5.59e-08 8.63e-08 6.37e-08 4.19e-08 5.14e-08 1.46e-07 5.27e-08 7.72e-09 4.67e-08 1.92e-08 1.21e-07 1.88e-09 5.04e-08
ENSG00000280670 CCDC163 115671 7.08e-06 9.42e-06 1.29e-06 5.09e-06 2.25e-06 3.52e-06 9.52e-06 1.79e-06 7.82e-06 4.2e-06 1.05e-05 5.23e-06 1.27e-05 3.88e-06 2.22e-06 6.42e-06 3.7e-06 5.81e-06 2.53e-06 2.74e-06 4.39e-06 8e-06 6.94e-06 2.68e-06 1.28e-05 2.58e-06 4.88e-06 3.19e-06 7.59e-06 7.65e-06 4.82e-06 9.55e-07 8.4e-07 2.91e-06 3.7e-06 2.06e-06 1.55e-06 1.84e-06 1.26e-06 9.35e-07 9.55e-07 1.11e-05 1.45e-06 1.61e-07 6.9e-07 1.61e-06 1.27e-06 7.32e-07 5.08e-07