Genes within 1Mb (chr1:45609937:C:T):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 118774 eQTL 2.10e-11 0.131 0.0194 0.0 0.0 0.163
ENSG00000086015 MAST2 -177050 eQTL 1.06e-16 -0.213 0.0252 0.0 0.0 0.163
ENSG00000117450 PRDX1 86890 pQTL 3.22e-02 0.0475 0.0222 0.00113 0.0 0.167
ENSG00000117450 PRDX1 86890 eQTL 6.76e-03 0.0415 0.0153 0.0 0.0 0.163
ENSG00000117461 PIK3R3 -523099 eQTL 3.08e-11 -0.176 0.0262 0.0 0.0 0.163
ENSG00000126088 UROD 598987 pQTL 3.03e-03 0.0566 0.0191 0.0 0.0 0.167
ENSG00000126088 UROD 598987 eQTL 1.12e-02 0.0699 0.0275 0.0 0.0 0.163
ENSG00000159592 GPBP1L1 -78176 eQTL 4.60e-03 -0.0402 0.0141 0.0 0.0 0.163
ENSG00000162415 ZSWIM5 303728 eQTL 8.54e-02 -0.0479 0.0278 0.00132 0.0 0.163
ENSG00000197429 IPP -140713 eQTL 3.94e-02 -0.0555 0.0269 0.0 0.0 0.163
ENSG00000222009 BTBD19 801455 eQTL 3.93e-02 0.0402 0.0195 0.0 0.0 0.163
ENSG00000225447 RPS15AP10 -36260 eQTL 1.22e-13 0.325 0.0431 0.0 0.0 0.163
ENSG00000234329 AL604028.2 -41889 eQTL 4.30e-18 0.28 0.0317 0.0 0.0 0.163
ENSG00000280670 CCDC163 109858 eQTL 3.15e-04 -0.177 0.049 0.0 0.0 0.163


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 118774 5.29e-06 7.1e-06 7.62e-07 3.67e-06 1.66e-06 2.14e-06 8.3e-06 1.29e-06 4.75e-06 3.42e-06 8.87e-06 2.93e-06 1.1e-05 2.83e-06 1.05e-06 4.62e-06 3.28e-06 3.76e-06 1.93e-06 1.8e-06 3.37e-06 7.41e-06 4.93e-06 1.93e-06 9.79e-06 2.31e-06 3.51e-06 2.27e-06 6.12e-06 6.7e-06 3.36e-06 5.55e-07 7.99e-07 2.63e-06 2.47e-06 1.71e-06 1.35e-06 9.43e-07 1.24e-06 8.57e-07 7.88e-07 8.42e-06 7.18e-07 1.61e-07 7.32e-07 1.01e-06 8.75e-07 6.35e-07 5.66e-07
ENSG00000086015 MAST2 -177050 4.04e-06 4.7e-06 7.84e-07 2.41e-06 1.12e-06 1.35e-06 3e-06 9.55e-07 3.82e-06 2.01e-06 4.46e-06 3.21e-06 7.67e-06 2.04e-06 1.3e-06 3.03e-06 2.04e-06 2.87e-06 1.35e-06 9.88e-07 2.63e-06 4.56e-06 3.51e-06 1.57e-06 5.3e-06 1.32e-06 2.53e-06 1.72e-06 4.17e-06 3.87e-06 1.96e-06 5.42e-07 6.92e-07 1.88e-06 2.04e-06 9.79e-07 9.44e-07 4.6e-07 1.07e-06 3.58e-07 3.75e-07 5.32e-06 4.34e-07 1.69e-07 3.69e-07 6.75e-07 9.78e-07 4.43e-07 3.43e-07
ENSG00000117450 PRDX1 86890 7.81e-06 9.59e-06 1.21e-06 5e-06 2.22e-06 4e-06 1e-05 1.92e-06 8.22e-06 5.09e-06 1.19e-05 4.92e-06 1.4e-05 3.84e-06 2.24e-06 6.52e-06 4.13e-06 6.21e-06 2.65e-06 2.77e-06 5.22e-06 8.98e-06 7.06e-06 3.2e-06 1.31e-05 3.31e-06 4.77e-06 3.88e-06 8.29e-06 7.9e-06 5.07e-06 9.54e-07 1.29e-06 3.12e-06 4.14e-06 2.53e-06 1.86e-06 1.95e-06 1.68e-06 9.68e-07 1e-06 1.25e-05 1.29e-06 2.2e-07 7.51e-07 1.76e-06 1.7e-06 7.04e-07 4.6e-07
ENSG00000117461 PIK3R3 -523099 9.39e-07 6.65e-07 1.31e-07 4.26e-07 1.07e-07 3.15e-07 6.18e-07 1.76e-07 6.03e-07 2.81e-07 9.39e-07 4.94e-07 1.05e-06 1.54e-07 2.81e-07 3.4e-07 4.87e-07 4.24e-07 2.79e-07 1.91e-07 2.51e-07 4.99e-07 4e-07 2.29e-07 1.22e-06 2.57e-07 4.16e-07 3.13e-07 4.15e-07 7.39e-07 3.56e-07 6.31e-08 9.36e-08 1.75e-07 3.8e-07 1.54e-07 1.43e-07 1.26e-07 6.66e-08 1.6e-08 1.04e-07 6.49e-07 5.44e-08 1.28e-08 1.48e-07 3.87e-08 1.3e-07 4.41e-08 6.17e-08
ENSG00000142959 \N 821767 3.21e-07 1.7e-07 6.15e-08 2.26e-07 1.05e-07 8.85e-08 2.4e-07 6.12e-08 1.85e-07 9.72e-08 1.83e-07 1.52e-07 2.55e-07 8.15e-08 5.97e-08 9.35e-08 4.63e-08 1.91e-07 7.36e-08 6.16e-08 1.24e-07 1.76e-07 1.68e-07 4.07e-08 2.48e-07 1.51e-07 1.31e-07 1.28e-07 1.32e-07 1.38e-07 1.26e-07 4.4e-08 4.86e-08 9.3e-08 5.5e-08 3.3e-08 5.02e-08 7.1e-08 6.49e-08 6.67e-08 5.04e-08 1.59e-07 3.19e-08 1.55e-08 3.4e-08 6.83e-09 7.13e-08 0.0 4.98e-08
ENSG00000159592 GPBP1L1 -78176 7.96e-06 9.98e-06 1.25e-06 5.82e-06 2.39e-06 4.21e-06 1.04e-05 2.11e-06 9.51e-06 5.38e-06 1.27e-05 5.35e-06 1.62e-05 3.66e-06 2.66e-06 6.63e-06 4.73e-06 7.18e-06 2.58e-06 2.82e-06 5.84e-06 9.92e-06 7.76e-06 3.25e-06 1.52e-05 3.85e-06 5.24e-06 4.58e-06 9.94e-06 8.34e-06 5.62e-06 1.11e-06 1.21e-06 3.37e-06 4.61e-06 2.59e-06 1.83e-06 1.91e-06 2.16e-06 1.01e-06 1.01e-06 1.3e-05 1.38e-06 2.52e-07 7.85e-07 1.72e-06 1.75e-06 7.25e-07 4.73e-07
ENSG00000173846 \N 809560 3.27e-07 1.67e-07 6.28e-08 2.24e-07 1.07e-07 9.31e-08 2.5e-07 5.89e-08 1.86e-07 1.03e-07 1.86e-07 1.59e-07 2.74e-07 8.44e-08 6.12e-08 9.35e-08 5.27e-08 1.91e-07 7.42e-08 6.29e-08 1.23e-07 1.81e-07 1.68e-07 4.27e-08 2.59e-07 1.56e-07 1.31e-07 1.36e-07 1.37e-07 1.39e-07 1.22e-07 4.23e-08 4.97e-08 9.52e-08 6.25e-08 3.43e-08 5.1e-08 6.66e-08 6.21e-08 6.79e-08 4.36e-08 1.6e-07 3.25e-08 1.57e-08 3.87e-08 6.98e-09 7.66e-08 0.0 4.83e-08
ENSG00000225447 RPS15AP10 -36260 1.48e-05 1.9e-05 3.06e-06 1.11e-05 3.15e-06 7.99e-06 2.29e-05 3.51e-06 1.73e-05 9.14e-06 2.38e-05 8.69e-06 3.24e-05 7.61e-06 5.14e-06 1.06e-05 9.72e-06 1.49e-05 4.95e-06 4.54e-06 9.03e-06 1.87e-05 1.77e-05 5.75e-06 2.93e-05 5.5e-06 8.03e-06 8.03e-06 1.8e-05 1.63e-05 1.24e-05 1.33e-06 1.66e-06 5.15e-06 7.8e-06 4.22e-06 2.24e-06 2.73e-06 3.2e-06 2.44e-06 1.59e-06 2.46e-05 2.63e-06 3.33e-07 1.85e-06 2.7e-06 3.42e-06 1.34e-06 1.11e-06
ENSG00000234329 AL604028.2 -41889 1.37e-05 1.62e-05 2.86e-06 9.74e-06 2.91e-06 6.99e-06 2.07e-05 3.37e-06 1.62e-05 8.28e-06 2.11e-05 8.01e-06 2.95e-05 6.43e-06 4.91e-06 1.01e-05 8.63e-06 1.27e-05 4.31e-06 4.19e-06 8.33e-06 1.65e-05 1.58e-05 5.15e-06 2.69e-05 5.34e-06 8e-06 7.64e-06 1.66e-05 1.5e-05 1.13e-05 1.22e-06 1.51e-06 4.8e-06 7.16e-06 3.82e-06 1.97e-06 2.67e-06 2.99e-06 2.17e-06 1.44e-06 2.19e-05 2.48e-06 3.18e-07 1.48e-06 2.77e-06 3.11e-06 1.22e-06 1.02e-06