Genes within 1Mb (chr1:45424483:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000070759 TESK2 -66680 eQTL 2.10e-39 -0.19 0.0138 0.0 0.0 0.441
ENSG00000086015 MAST2 -362504 eQTL 2.08e-05 0.0843 0.0197 0.0 0.0 0.441
ENSG00000117461 PIK3R3 -708553 eQTL 2.84e-15 0.159 0.0198 0.0 0.0 0.441
ENSG00000117481 NSUN4 -915694 eQTL 3.86e-02 -0.0508 0.0245 0.0 0.0 0.441
ENSG00000132763 MMACHC -75817 eQTL 1.58e-02 -0.0745 0.0308 0.0 0.0 0.441
ENSG00000132781 MUTYH 84013 eQTL 1.02e-02 -0.0341 0.0133 0.0 0.0 0.441
ENSG00000159588 CCDC17 -199574 eQTL 1.37e-09 0.0861 0.0141 0.0 0.0 0.441
ENSG00000159592 GPBP1L1 -263630 eQTL 9.00e-03 0.0282 0.0108 0.0 0.0 0.441
ENSG00000159596 TMEM69 -263698 eQTL 5.71e-10 0.136 0.0218 0.0 0.0 0.441
ENSG00000197429 IPP -326167 eQTL 2.37e-03 0.0622 0.0204 0.0 0.0 0.441
ENSG00000225447 RPS15AP10 -221714 eQTL 9.16e-09 -0.192 0.0332 0.0 0.0 0.441
ENSG00000230896 AL604028.1 -272592 eQTL 2.96e-02 0.0831 0.0381 0.0 0.0 0.441
ENSG00000234329 AL604028.2 -227343 eQTL 2.58e-21 -0.232 0.0239 0.0 0.0 0.441
ENSG00000280670 CCDC163 -75596 eQTL 3.09e-05 -0.156 0.0372 0.0 0.0 0.441
ENSG00000281912 LINC01144 120573 eQTL 6.94e-04 0.115 0.0338 0.0 0.0 0.441


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000070759 TESK2 -66680 1.11e-05 1.45e-05 2.67e-06 1.17e-05 2.32e-06 6.2e-06 1.84e-05 2.93e-06 1.59e-05 6.86e-06 1.85e-05 8.22e-06 2.5e-05 7.35e-06 4.39e-06 1.09e-05 7.02e-06 1.23e-05 3.37e-06 3.72e-06 6.73e-06 1.32e-05 1.31e-05 4.78e-06 2.49e-05 4.33e-06 7.98e-06 7.63e-06 1.48e-05 1.15e-05 8.9e-06 1.45e-06 1.46e-06 3.8e-06 7.67e-06 4.57e-06 1.71e-06 2.38e-06 2.22e-06 3.14e-06 1.21e-06 1.96e-05 2.52e-06 2.71e-07 1.27e-06 2.61e-06 2.85e-06 1.26e-06 1.28e-06
ENSG00000086015 MAST2 -362504 1.27e-06 1.01e-06 3.14e-07 1.27e-06 3.75e-07 6.31e-07 1.13e-06 3.68e-07 1.25e-06 4.31e-07 1.89e-06 7.84e-07 1.91e-06 3.95e-07 5.35e-07 9.97e-07 9.26e-07 7.36e-07 7.7e-07 4.63e-07 7.11e-07 1.72e-06 9.97e-07 6.39e-07 2.29e-06 3.75e-07 9.15e-07 8.7e-07 9.73e-07 1.27e-06 5.88e-07 3.22e-07 2.57e-07 5.6e-07 5.23e-07 5.42e-07 7.33e-07 1.9e-07 4.82e-07 4.27e-07 2.87e-07 1.55e-06 1.09e-07 1.95e-08 1.9e-07 3.43e-07 2.38e-07 1.42e-07 1.57e-07
ENSG00000117450 \N -98564 7.84e-06 1.04e-05 1.68e-06 8.01e-06 2.35e-06 4.23e-06 1.03e-05 2.13e-06 9.93e-06 5.42e-06 1.28e-05 6.27e-06 1.51e-05 4.27e-06 2.83e-06 8.21e-06 4.55e-06 7.69e-06 2.53e-06 2.82e-06 4.8e-06 9.68e-06 8.08e-06 3.28e-06 1.52e-05 3e-06 6.2e-06 5.03e-06 9.77e-06 8.14e-06 5.67e-06 1.12e-06 1.17e-06 3.07e-06 5.21e-06 3.03e-06 1.83e-06 1.96e-06 1.82e-06 2.62e-06 9.34e-07 1.34e-05 1.57e-06 1.59e-07 8.01e-07 1.89e-06 1.75e-06 6.52e-07 7.09e-07
ENSG00000117461 PIK3R3 -708553 3.02e-07 2.89e-07 6.41e-08 3.05e-07 1.05e-07 1.32e-07 2.5e-07 6.72e-08 1.98e-07 1.05e-07 2.62e-07 1.96e-07 2.55e-07 1.1e-07 7.98e-08 1.49e-07 8.74e-08 2.75e-07 1.56e-07 8.25e-08 1.59e-07 2.3e-07 2.56e-07 4.25e-08 2.86e-07 1.71e-07 1.48e-07 2.44e-07 1.37e-07 2.75e-07 1.26e-07 7.33e-08 5.64e-08 1.17e-07 1.16e-07 6.85e-08 1.43e-07 5.8e-08 5.54e-08 4.25e-08 4.45e-08 2.6e-07 1.67e-08 1.7e-08 4.99e-08 1.35e-08 7.26e-08 7.25e-09 4.68e-08
ENSG00000132781 MUTYH 84013 9.27e-06 1.24e-05 2.38e-06 9.48e-06 2.54e-06 5.21e-06 1.23e-05 2.2e-06 1.18e-05 5.8e-06 1.5e-05 6.83e-06 1.91e-05 5.28e-06 3.5e-06 9.23e-06 5.57e-06 9.82e-06 2.65e-06 3.14e-06 6.03e-06 1.09e-05 1.01e-05 3.69e-06 2.02e-05 3.89e-06 7.21e-06 5.64e-06 1.22e-05 9.37e-06 7.01e-06 1.22e-06 1.22e-06 3.54e-06 6.13e-06 3.76e-06 1.85e-06 2e-06 2.23e-06 2.79e-06 1.07e-06 1.63e-05 1.79e-06 2.03e-07 8.86e-07 2.34e-06 2.11e-06 8.65e-07 1.02e-06
ENSG00000142945 \N 684665 3.07e-07 3.11e-07 7.45e-08 3.58e-07 1.07e-07 1.54e-07 2.74e-07 7.52e-08 2.01e-07 1.11e-07 3.21e-07 2.11e-07 2.94e-07 1.23e-07 9.12e-08 1.61e-07 1.01e-07 2.87e-07 1.77e-07 1.15e-07 1.57e-07 2.48e-07 2.77e-07 5.01e-08 3.27e-07 1.82e-07 1.74e-07 2.65e-07 1.37e-07 3.3e-07 1.35e-07 6.13e-08 6.08e-08 1.16e-07 1.39e-07 6.94e-08 1.84e-07 6.2e-08 4.11e-08 9.03e-08 4.78e-08 2.74e-07 2.67e-08 1.74e-08 5.84e-08 1.44e-08 7.66e-08 1.18e-08 4.66e-08
ENSG00000159588 CCDC17 -199574 2.7e-06 4.16e-06 7.62e-07 3.09e-06 9.65e-07 1.03e-06 2.45e-06 9.76e-07 2.69e-06 1.83e-06 4.14e-06 3.36e-06 5.41e-06 2.29e-06 1.07e-06 3.71e-06 2.02e-06 2.87e-06 1.42e-06 1.09e-06 1.73e-06 4.05e-06 3.5e-06 1.9e-06 4.77e-06 1.02e-06 2.35e-06 1.77e-06 3.18e-06 3.94e-06 2e-06 8.06e-07 8.13e-07 1.88e-06 2.04e-06 1.15e-06 9.91e-07 4.72e-07 1.29e-06 1.18e-06 7.1e-07 4.72e-06 3.78e-07 2.07e-07 4.13e-07 9.32e-07 6.79e-07 5.67e-07 4.54e-07
ENSG00000159596 TMEM69 -263698 1.39e-06 2.43e-06 2.51e-07 1.92e-06 4.76e-07 7.84e-07 1.25e-06 4.97e-07 1.78e-06 7.18e-07 2.11e-06 1.28e-06 2.75e-06 1.41e-06 4.97e-07 1.68e-06 1.15e-06 1.92e-06 7.88e-07 1.5e-06 7.69e-07 2.57e-06 2.15e-06 1.02e-06 2.69e-06 9.19e-07 1.21e-06 1.78e-06 1.75e-06 1.93e-06 8.48e-07 4.18e-07 5.28e-07 1.25e-06 1.01e-06 9.09e-07 9.08e-07 3.84e-07 9.3e-07 1.03e-06 3.61e-07 2.83e-06 3.75e-07 9.66e-08 3.98e-07 3.61e-07 4.22e-07 2.15e-07 1.66e-07
ENSG00000186603 \N 97578 7.78e-06 1.08e-05 1.76e-06 8.12e-06 2.4e-06 4.22e-06 1.05e-05 2.18e-06 1.01e-05 5.52e-06 1.3e-05 6.43e-06 1.56e-05 4.48e-06 2.89e-06 8.42e-06 4.62e-06 7.91e-06 2.5e-06 2.8e-06 4.97e-06 9.92e-06 8.25e-06 3.25e-06 1.54e-05 3.09e-06 6.34e-06 5.04e-06 9.94e-06 8.21e-06 5.65e-06 1.11e-06 1.13e-06 3.14e-06 5.32e-06 3.11e-06 1.82e-06 1.92e-06 1.84e-06 2.62e-06 9.3e-07 1.36e-05 1.64e-06 1.58e-07 7.98e-07 1.96e-06 1.74e-06 6.86e-07 7.53e-07
ENSG00000197429 IPP -326167 1.33e-06 1.31e-06 3.06e-07 1.53e-06 4.41e-07 6.47e-07 1.58e-06 3.9e-07 1.45e-06 6.24e-07 2.05e-06 1.05e-06 2.29e-06 8.3e-07 5.01e-07 1.02e-06 1.08e-06 1.14e-06 5.93e-07 7.62e-07 7.6e-07 1.96e-06 1.35e-06 6.29e-07 2.49e-06 5.38e-07 1.06e-06 1.11e-06 1.29e-06 1.43e-06 7.32e-07 4.71e-07 3.19e-07 7.02e-07 5.91e-07 6.3e-07 8.32e-07 2.74e-07 5.07e-07 5.91e-07 1.82e-07 1.77e-06 2.32e-07 3.39e-08 2.81e-07 3.47e-07 2.19e-07 2.43e-07 2.59e-07
ENSG00000225447 RPS15AP10 -221714 2.02e-06 3.03e-06 5.55e-07 2.52e-06 7.91e-07 7.9e-07 1.87e-06 8.04e-07 2.02e-06 1.31e-06 3.22e-06 2.39e-06 3.5e-06 1.82e-06 9.21e-07 2.43e-06 1.61e-06 2.12e-06 1.58e-06 9.72e-07 1.37e-06 3.44e-06 3.37e-06 1.44e-06 4.08e-06 1.28e-06 1.61e-06 1.43e-06 1.95e-06 3.09e-06 2.01e-06 5.64e-07 5.48e-07 1.78e-06 1.84e-06 9.79e-07 9.52e-07 4.22e-07 1.27e-06 1.01e-06 6.13e-07 4.16e-06 6.36e-07 1.74e-07 3.69e-07 4.99e-07 8.61e-07 3.34e-07 3.38e-07
ENSG00000234329 AL604028.2 -227343 1.96e-06 3.13e-06 4.9e-07 2.43e-06 7.62e-07 7.6e-07 1.59e-06 7.58e-07 1.89e-06 1.21e-06 3.13e-06 1.98e-06 3.31e-06 1.64e-06 8.88e-07 2.37e-06 1.55e-06 2.12e-06 1.51e-06 9.17e-07 1.26e-06 3.29e-06 3.06e-06 1.2e-06 4.08e-06 1.22e-06 1.57e-06 1.43e-06 1.8e-06 2.93e-06 1.81e-06 5.87e-07 6.63e-07 1.59e-06 1.65e-06 1.02e-06 9.24e-07 4.65e-07 1.33e-06 1.03e-06 5.68e-07 4.08e-06 5.92e-07 1.41e-07 3.06e-07 3.93e-07 8.03e-07 2.87e-07 3.34e-07
ENSG00000280670 CCDC163 -75596 1.02e-05 1.29e-05 2.53e-06 1.04e-05 2.35e-06 5.72e-06 1.5e-05 2.46e-06 1.39e-05 6.09e-06 1.68e-05 7.55e-06 2.23e-05 6.13e-06 3.96e-06 1.01e-05 6.44e-06 1.12e-05 3.09e-06 3.3e-06 6.77e-06 1.21e-05 1.13e-05 4.21e-06 2.28e-05 4.43e-06 7.69e-06 6.41e-06 1.34e-05 1.05e-05 7.73e-06 1.27e-06 1.25e-06 3.64e-06 6.8e-06 4.06e-06 1.73e-06 2.13e-06 2.06e-06 2.9e-06 1.11e-06 1.79e-05 2.34e-06 2.36e-07 9.9e-07 2.44e-06 2.46e-06 1.02e-06 1.07e-06