Genes within 1Mb (chr1:44574478:CAT:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066135 KDM4A 924329 eQTL 2.91e-02 0.14 0.0642 0.0 0.0 0.0142
ENSG00000126088 UROD -436472 pQTL 2.00e-02 0.136 0.0585 0.0 0.0 0.0159
ENSG00000126106 TMEM53 -100003 eQTL 2.25e-02 0.245 0.107 0.00107 0.0 0.0142
ENSG00000142945 KIF2C -165340 eQTL 4.45e-02 -0.14 0.0696 0.0 0.0 0.0142
ENSG00000187147 RNF220 169284 eQTL 1.41e-02 -0.116 0.0472 0.00155 0.0 0.0142
ENSG00000225721 AL592166.1 -201332 eQTL 2.42e-05 0.626 0.147 0.0 0.00166 0.0142
ENSG00000280670 CCDC163 -925601 eQTL 2.30e-10 0.97 0.151 0.0 0.0 0.0142


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117448 \N -976065 8.35e-07 9.03e-07 4.98e-08 2.09e-07 8.92e-08 8.21e-08 3.42e-07 5.19e-08 1.98e-07 4.38e-08 5.29e-07 3.08e-07 6e-07 2.12e-07 2.57e-07 1.39e-07 9.3e-08 3.44e-07 5.39e-08 3.88e-08 1.25e-07 3.15e-07 2.56e-07 4.05e-08 3.27e-07 1.16e-07 1.11e-07 9.15e-08 1.31e-07 1.29e-07 2.19e-07 3.52e-08 2.74e-08 8.34e-08 3.12e-08 3.97e-08 5.64e-08 8.91e-08 7.58e-08 3.59e-08 3.46e-08 2.17e-06 4.12e-08 0.0 1.09e-07 1.83e-08 1.3e-07 4.82e-09 4.61e-08
ENSG00000117450 \N -948569 9.14e-07 9.37e-07 5.49e-08 2.24e-07 8.83e-08 8.33e-08 3.7e-07 5.2e-08 2.01e-07 4.4e-08 6.28e-07 3.3e-07 6.77e-07 2.09e-07 3.1e-07 1.53e-07 1.18e-07 3.79e-07 5.82e-08 4.03e-08 1.27e-07 3.65e-07 2.81e-07 3.68e-08 3.7e-07 1.14e-07 1.08e-07 9.32e-08 1.31e-07 1.38e-07 2.55e-07 3.72e-08 2.91e-08 8e-08 3.36e-08 3.77e-08 5.54e-08 9.2e-08 7.52e-08 3.59e-08 3.46e-08 2.5e-06 4.04e-08 0.0 1.01e-07 1.83e-08 1.26e-07 4.82e-09 4.61e-08
ENSG00000126106 TMEM53 -100003 1.67e-05 1.29e-05 8.44e-07 4.15e-06 1.74e-06 4.55e-06 1.44e-05 1.15e-06 9.26e-06 3.29e-06 1.4e-05 6.02e-06 2.79e-05 5.77e-06 5.8e-06 6.58e-06 4.57e-06 1.18e-05 1.94e-06 1.14e-06 5.35e-06 1.16e-05 1.25e-05 2.03e-06 1.3e-05 3.28e-06 2.68e-06 2.13e-06 1.02e-05 7.58e-06 1.05e-05 4.46e-07 7.68e-07 1.79e-06 2.88e-06 1.73e-06 9.73e-07 4.59e-07 8.54e-07 3.81e-07 2.74e-07 0.000135 1.29e-06 1.92e-08 3.43e-07 1.19e-06 9.05e-07 2.07e-07 2.87e-07
ENSG00000196517 \N 543011 1.87e-06 4.18e-06 3.08e-07 6.38e-07 1.05e-07 3.69e-07 1.58e-06 1.03e-07 1.12e-06 1.39e-07 2.02e-06 1.01e-06 2.59e-06 1.4e-06 9.33e-07 9.54e-07 1.01e-06 1.33e-06 2.79e-07 8.11e-08 3.49e-07 1.91e-06 1.34e-06 2.24e-07 2.26e-06 2.64e-07 2.23e-07 1.85e-07 8.81e-07 1.01e-06 8.13e-07 3.64e-08 4.96e-08 1.56e-07 3.81e-07 8.32e-08 4.54e-08 7.61e-08 4.23e-08 4.08e-08 4.51e-08 1.03e-05 1.67e-08 0.0 4.92e-08 1.95e-08 7e-08 4.04e-09 5.09e-08
ENSG00000225721 AL592166.1 -201332 9.14e-06 9.41e-06 8.35e-07 3.22e-06 6.88e-07 1.58e-06 7.57e-06 9.98e-07 4.57e-06 1.03e-06 8.95e-06 2.93e-06 1.25e-05 3.53e-06 3.96e-06 3.99e-06 1.88e-06 6.67e-06 1.45e-06 1.13e-06 2.71e-06 7.65e-06 6.71e-06 1.4e-06 6.86e-06 1.52e-06 1.38e-06 1.77e-06 4.48e-06 4.17e-06 4.46e-06 2.62e-07 5.71e-07 1.24e-06 2.04e-06 9.43e-07 7.69e-07 4.02e-07 1.18e-06 2.37e-07 2.19e-07 9.52e-05 3.96e-07 7.18e-09 3.45e-07 3.73e-07 4.03e-07 8.41e-08 8.37e-08
ENSG00000280670 CCDC163 -925601 9.83e-07 9.39e-07 5.72e-08 2.24e-07 8.83e-08 8.63e-08 4.05e-07 5.37e-08 2.12e-07 4.4e-08 7.15e-07 3.5e-07 7.36e-07 2.4e-07 3.27e-07 1.75e-07 1.62e-07 3.74e-07 5.75e-08 4.03e-08 1.22e-07 3.8e-07 3.07e-07 3.42e-08 4.27e-07 1.14e-07 1.08e-07 9.36e-08 1.32e-07 1.46e-07 2.73e-07 3.72e-08 2.92e-08 8.11e-08 4.41e-08 3.76e-08 4.99e-08 9.26e-08 7.23e-08 3.34e-08 4.02e-08 2.7e-06 3.91e-08 0.0 1.01e-07 1.99e-08 1.27e-07 4.82e-09 4.61e-08