Genes within 1Mb (chr1:44356466:T:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 706317 sc-eQTL 5.81e-01 -0.123 0.223 0.05 NK_HLA L2
ENSG00000066322 ELOVL1 988392 sc-eQTL 6.14e-01 0.107 0.212 0.05 NK_HLA L2
ENSG00000070785 EIF2B3 -630256 sc-eQTL 4.92e-01 0.149 0.216 0.05 NK_HLA L2
ENSG00000117408 IPO13 409516 sc-eQTL 8.17e-01 -0.0471 0.203 0.05 NK_HLA L2
ENSG00000117410 ATP6V0B 381979 sc-eQTL 6.07e-01 -0.108 0.21 0.05 NK_HLA L2
ENSG00000117411 B4GALT2 377523 sc-eQTL 5.10e-01 -0.129 0.195 0.05 NK_HLA L2
ENSG00000117419 ERI3 1206 sc-eQTL 3.50e-01 -0.204 0.218 0.05 NK_HLA L2
ENSG00000126088 UROD -654484 sc-eQTL 2.13e-02 0.501 0.216 0.05 NK_HLA L2
ENSG00000126091 ST3GAL3 650642 sc-eQTL 1.74e-01 0.294 0.216 0.05 NK_HLA L2
ENSG00000126106 TMEM53 -318015 sc-eQTL 4.41e-01 0.16 0.207 0.05 NK_HLA L2
ENSG00000126107 HECTD3 -654858 sc-eQTL 1.54e-01 0.329 0.23 0.05 NK_HLA L2
ENSG00000132768 DPH2 386466 sc-eQTL 5.86e-01 -0.122 0.223 0.05 NK_HLA L2
ENSG00000132773 TOE1 -983586 sc-eQTL 1.41e-01 0.314 0.213 0.05 NK_HLA L2
ENSG00000132781 MUTYH -984427 sc-eQTL 9.86e-01 0.00385 0.223 0.05 NK_HLA L2
ENSG00000142937 RPS8 -418785 sc-eQTL 6.69e-02 0.173 0.0938 0.05 NK_HLA L2
ENSG00000159214 CCDC24 365107 sc-eQTL 1.95e-01 -0.26 0.2 0.05 NK_HLA L2
ENSG00000159479 MED8 966658 sc-eQTL 5.00e-01 -0.157 0.232 0.05 NK_HLA L2
ENSG00000162415 ZSWIM5 -949743 sc-eQTL 1.43e-01 0.283 0.192 0.05 NK_HLA L2
ENSG00000173846 PLK3 -443911 sc-eQTL 6.90e-01 0.0781 0.196 0.05 NK_HLA L2
ENSG00000178028 DMAP1 143011 sc-eQTL 8.85e-01 0.0319 0.22 0.05 NK_HLA L2
ENSG00000178922 HYI 902477 sc-eQTL 7.07e-01 0.079 0.21 0.05 NK_HLA L2
ENSG00000187147 RNF220 -48728 sc-eQTL 1.50e-01 0.272 0.188 0.05 NK_HLA L2
ENSG00000198198 SZT2 966584 sc-eQTL 9.44e-01 0.0131 0.187 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 988392 eQTL 0.0215 0.0727 0.0316 0.0 0.0 0.0672
ENSG00000117399 CDC20 997485 eQTL 0.047 0.0539 0.0271 0.00101 0.0 0.0672
ENSG00000117408 IPO13 409516 eQTL 8.25e-06 0.141 0.0314 0.0 0.0 0.0672
ENSG00000117410 ATP6V0B 381979 eQTL 0.00166 0.0586 0.0186 0.0 0.0 0.0672
ENSG00000142949 PTPRF 831279 pQTL 0.00467 -0.143 0.0505 0.0 0.0 0.0712
ENSG00000159214 CCDC24 365107 eQTL 0.00621 0.196 0.0715 0.0 0.0 0.0672
ENSG00000178028 DMAP1 143011 eQTL 1.72e-35 -0.483 0.0373 0.0 0.0 0.0672
ENSG00000229431 AL139289.1 971353 eQTL 0.00419 0.218 0.0759 0.00201 0.0 0.0672


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 988392 4.21e-07 2.5e-07 6.04e-08 4.29e-07 9.8e-08 1.54e-07 4.05e-07 5.85e-08 2.53e-07 9.72e-08 2.18e-07 1.31e-07 4.74e-07 8.85e-08 7.35e-08 9.48e-08 4.35e-08 1.91e-07 8.93e-08 7.05e-08 1.6e-07 1.98e-07 2.11e-07 3.49e-08 3.41e-07 1.31e-07 1.29e-07 1.26e-07 1.36e-07 2e-07 1.59e-07 3.39e-08 4.93e-08 1.17e-07 3.08e-07 5.05e-08 7.74e-08 7.64e-08 4.23e-08 5.32e-08 7.16e-08 2.6e-07 2.16e-08 1.24e-08 2.82e-08 1.95e-08 8.67e-08 1.13e-08 4.8e-08
ENSG00000117399 CDC20 997485 3.92e-07 2.5e-07 5.93e-08 4.31e-07 9.8e-08 1.5e-07 3.94e-07 5.75e-08 2.53e-07 9.72e-08 2.18e-07 1.31e-07 4.74e-07 8.85e-08 7.35e-08 9.48e-08 4.35e-08 1.8e-07 8.68e-08 6.58e-08 1.59e-07 1.98e-07 2.11e-07 3.4e-08 3.27e-07 1.31e-07 1.29e-07 1.17e-07 1.36e-07 1.89e-07 1.52e-07 3.39e-08 5.17e-08 1.15e-07 3.01e-07 5.32e-08 7.52e-08 7.53e-08 4.17e-08 5.25e-08 6.31e-08 2.43e-07 1.7e-08 1.23e-08 2.82e-08 1.91e-08 8.98e-08 7.25e-09 4.8e-08
ENSG00000117408 IPO13 409516 1.58e-06 2.4e-06 2.75e-07 1.9e-06 3.58e-07 8.1e-07 1.34e-06 3.85e-07 1.76e-06 6.69e-07 1.89e-06 7.79e-07 3.04e-06 8.7e-07 4.81e-07 9.54e-07 1.11e-06 8.82e-07 5.32e-07 6.46e-07 1.1e-06 1.91e-06 1.59e-06 6.1e-07 2.55e-06 7.64e-07 1.01e-06 8.87e-07 1.71e-06 1.59e-06 7.52e-07 2.53e-07 3.84e-07 8.37e-07 1.33e-06 8.48e-07 7.76e-07 4.12e-07 9.35e-07 3.97e-07 2.44e-07 2.51e-06 6.38e-07 1.79e-07 2.1e-07 3.14e-07 2.6e-07 1.98e-07 2.04e-07
ENSG00000117410 ATP6V0B 381979 1.93e-06 2.55e-06 2.18e-07 2.1e-06 3.82e-07 7.85e-07 1.44e-06 4.08e-07 1.68e-06 7.15e-07 1.88e-06 9.17e-07 3.58e-06 1.11e-06 3.86e-07 1.02e-06 1.1e-06 1.08e-06 7.93e-07 9.31e-07 1.41e-06 2e-06 1.82e-06 6.79e-07 3.04e-06 8.38e-07 1.05e-06 9.59e-07 1.73e-06 1.66e-06 9.07e-07 2.62e-07 4.59e-07 1.09e-06 1.65e-06 9.75e-07 8.12e-07 4.74e-07 1.11e-06 3.64e-07 1.51e-07 2.82e-06 4.63e-07 1.57e-07 3.17e-07 3.43e-07 2.68e-07 2.35e-07 2.62e-07
ENSG00000132768 \N 386466 1.86e-06 2.71e-06 2.43e-07 2.04e-06 3.73e-07 8.43e-07 1.36e-06 3.9e-07 1.74e-06 7.13e-07 1.9e-06 8.75e-07 3.47e-06 1.12e-06 3.95e-07 9.68e-07 1.13e-06 1.12e-06 7.66e-07 8.21e-07 1.36e-06 1.97e-06 1.77e-06 6.22e-07 2.88e-06 7.94e-07 1.01e-06 8.75e-07 1.75e-06 1.66e-06 8.48e-07 2.86e-07 4.55e-07 1.12e-06 1.69e-06 9.68e-07 8.44e-07 4.4e-07 1.12e-06 3.63e-07 1.52e-07 2.83e-06 4.43e-07 1.66e-07 3.22e-07 3.57e-07 2.28e-07 2.63e-07 2.8e-07
ENSG00000178028 DMAP1 143011 8.08e-06 1.18e-05 1.32e-06 7.79e-06 1.84e-06 4.19e-06 9.8e-06 1.29e-06 9.65e-06 4.74e-06 1.19e-05 4.49e-06 1.45e-05 3.81e-06 1.67e-06 5.93e-06 4.16e-06 3.95e-06 2.58e-06 2.83e-06 6.06e-06 8.93e-06 7e-06 2.76e-06 1.48e-05 2.82e-06 4.6e-06 3.39e-06 7.59e-06 7.93e-06 5.24e-06 7.64e-07 1.1e-06 2.94e-06 4.89e-06 2.83e-06 1.84e-06 1.35e-06 1.63e-06 1.11e-06 1e-06 1.25e-05 1.57e-06 2.1e-07 7.83e-07 1.82e-06 8.9e-07 7.37e-07 4.67e-07