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Genes within 1Mb (chr1:44346138:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 695989 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 978064 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -640584 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117408 IPO13 399188 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 371651 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 367195 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -9122 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -497115 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -664812 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 640314 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -328343 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -665186 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 376138 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000132773 TOE1 -993914 sc-eQTL 2.49e-01 -0.261 0.225 0.051 B_Activated L2
ENSG00000132781 MUTYH -994755 sc-eQTL 5.84e-01 0.13 0.236 0.051 B_Activated L2
ENSG00000142937 RPS8 -429113 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 354779 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 956330 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -454239 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 132683 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 892149 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -59056 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 956256 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -328554 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 695989 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 978064 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -640584 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117408 IPO13 399188 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 371651 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 367195 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -9122 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -664812 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 640314 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -328343 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -665186 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 376138 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000132773 TOE1 -993914 sc-eQTL 1.85e-01 0.277 0.208 0.053 NK_HLA L2
ENSG00000132781 MUTYH -994755 sc-eQTL 9.42e-01 0.016 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -429113 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 354779 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 956330 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000162415 ZSWIM5 -960071 sc-eQTL 1.65e-01 0.261 0.188 0.053 NK_HLA L2
ENSG00000173846 PLK3 -454239 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 132683 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 892149 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -59056 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 956256 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 695989 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 978064 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -640584 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117408 IPO13 399188 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 371651 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -9122 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -497115 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -664812 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 640314 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -328343 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -665186 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 376138 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000132773 TOE1 -993914 sc-eQTL 7.86e-01 -0.0569 0.209 0.051 intMono L2
ENSG00000132781 MUTYH -994755 sc-eQTL 3.92e-02 0.385 0.185 0.051 intMono L2
ENSG00000142937 RPS8 -429113 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 354779 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 956330 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -454239 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 132683 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 892149 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -59056 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 956256 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -328554 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -462344 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 978064 eQTL 0.0211 0.073 0.0316 0.0 0.0 0.0672
ENSG00000117399 CDC20 987157 eQTL 0.046 0.0542 0.0271 0.00102 0.0 0.0672
ENSG00000117408 IPO13 399188 eQTL 8.34e-06 0.141 0.0314 0.0 0.0 0.0672
ENSG00000117410 ATP6V0B 371651 eQTL 0.00158 0.0589 0.0186 0.0 0.0 0.0672
ENSG00000142949 PTPRF 820951 pQTL 0.0048 -0.143 0.0505 0.0 0.0 0.0712
ENSG00000159214 CCDC24 354779 eQTL 0.00592 0.197 0.0715 0.0 0.0 0.0672
ENSG00000178028 DMAP1 132683 eQTL 2.05e-35 -0.483 0.0373 0.0 0.0 0.0672
ENSG00000229431 AL139289.1 961025 eQTL 0.0043 0.217 0.0759 0.00197 0.0 0.0672

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 978064 2.74e-07 1.3e-07 4.69e-08 1.81e-07 1.01e-07 9.9e-08 1.53e-07 5.43e-08 1.45e-07 4.94e-08 1.57e-07 8.68e-08 1.45e-07 7.13e-08 6.04e-08 7.53e-08 4.17e-08 1.27e-07 5.97e-08 4.31e-08 1.21e-07 1.28e-07 1.44e-07 3.03e-08 1.46e-07 1.14e-07 1.07e-07 9.61e-08 1.12e-07 1.07e-07 9.7e-08 2.96e-08 3.89e-08 8e-08 6.67e-08 3.65e-08 5.29e-08 8.68e-08 6.63e-08 3.86e-08 5.13e-08 1.35e-07 5.21e-08 7.47e-09 3.83e-08 1.87e-08 1.18e-07 1.89e-09 5.01e-08
ENSG00000117399 CDC20 987157 2.74e-07 1.3e-07 4.48e-08 1.86e-07 9.79e-08 9.9e-08 1.53e-07 5.43e-08 1.45e-07 4.94e-08 1.57e-07 8.68e-08 1.45e-07 6.76e-08 6.04e-08 7.3e-08 4.17e-08 1.27e-07 5.97e-08 4.23e-08 1.19e-07 1.28e-07 1.39e-07 3.03e-08 1.46e-07 1.14e-07 1.07e-07 9.65e-08 1.12e-07 1.07e-07 9.7e-08 2.96e-08 3.89e-08 8.25e-08 6.67e-08 3.62e-08 5.29e-08 8.76e-08 6.59e-08 3.86e-08 5.13e-08 1.33e-07 5.21e-08 7.51e-09 3.84e-08 1.86e-08 1.19e-07 1.89e-09 5.02e-08
ENSG00000117408 IPO13 399188 1.11e-06 8.36e-07 1.59e-07 4.25e-07 1.16e-07 3.26e-07 6.51e-07 2.21e-07 6.71e-07 3.22e-07 1.03e-06 5.22e-07 1.05e-06 1.97e-07 3.31e-07 3.35e-07 6.29e-07 4.39e-07 3.26e-07 2.76e-07 2.43e-07 5.37e-07 4.74e-07 3.12e-07 1.36e-06 2.64e-07 4.37e-07 3.78e-07 5.7e-07 8.5e-07 3.81e-07 4.31e-08 1.04e-07 2.12e-07 3.39e-07 1.82e-07 1.83e-07 1.37e-07 1.01e-07 8.59e-09 1.16e-07 7.54e-07 6.3e-08 2.66e-08 1.91e-07 4.38e-08 1.49e-07 8.25e-08 5.26e-08
ENSG00000117410 ATP6V0B 371651 1.31e-06 8.72e-07 2.1e-07 3.17e-07 1.81e-07 3.3e-07 7.44e-07 2.71e-07 8.39e-07 2.69e-07 1.09e-06 5.51e-07 1.35e-06 2.19e-07 4.15e-07 4.12e-07 7.78e-07 5.02e-07 3.84e-07 3.72e-07 2.72e-07 5.66e-07 5.67e-07 4.09e-07 1.54e-06 2.4e-07 5.04e-07 4.4e-07 7e-07 9.22e-07 4.47e-07 3.75e-08 1.35e-07 2.84e-07 3e-07 2.58e-07 2.98e-07 1.51e-07 1.49e-07 9.55e-09 1.67e-07 9.5e-07 6.23e-08 4.15e-08 1.81e-07 7.03e-08 1.73e-07 8.43e-08 4.9e-08
ENSG00000132768 \N 376138 1.31e-06 8.81e-07 2.06e-07 3.1e-07 1.78e-07 3.36e-07 7.32e-07 2.64e-07 8.32e-07 2.85e-07 1.09e-06 5.45e-07 1.3e-06 2.05e-07 3.86e-07 4.14e-07 7.79e-07 4.95e-07 3.79e-07 3.57e-07 2.54e-07 5.71e-07 5.77e-07 3.62e-07 1.54e-06 2.38e-07 4.97e-07 4.23e-07 6.84e-07 9.25e-07 4.34e-07 3.7e-08 1.32e-07 2.87e-07 3.4e-07 2.54e-07 2.94e-07 1.58e-07 1.54e-07 9.44e-09 1.45e-07 9.49e-07 6.87e-08 4.12e-08 1.84e-07 6.87e-08 1.62e-07 8.35e-08 5.32e-08
ENSG00000178028 DMAP1 132683 4.02e-06 4.35e-06 6.89e-07 1.82e-06 8.92e-07 1.03e-06 2.91e-06 9.75e-07 3.03e-06 1.68e-06 4.29e-06 2.63e-06 6.51e-06 1.67e-06 1.02e-06 1.99e-06 1.95e-06 2.3e-06 1.45e-06 8.79e-07 1.97e-06 3.73e-06 3.49e-06 1.83e-06 4.92e-06 1.25e-06 1.86e-06 1.44e-06 4e-06 3.77e-06 1.96e-06 4.55e-07 7.75e-07 1.73e-06 1.97e-06 8.88e-07 9.38e-07 4.91e-07 1.07e-06 3.81e-07 4.03e-07 4.74e-06 5.42e-07 1.82e-07 3.82e-07 3.23e-07 7.71e-07 2.87e-07 1.78e-07