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Genes within 1Mb (chr1:44323243:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 673094 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 955169 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -663479 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117408 IPO13 376293 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 348756 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 344300 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -32017 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -520010 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -687707 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 617419 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -351238 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -688081 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 353243 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -452008 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 331884 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 933435 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -477134 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 109788 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 869254 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -81951 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 933361 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -351449 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 673094 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 955169 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -663479 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117408 IPO13 376293 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 348756 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 344300 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -32017 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -687707 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 617419 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -351238 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -688081 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 353243 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -452008 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 331884 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 933435 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000162415 ZSWIM5 -982966 sc-eQTL 1.65e-01 0.261 0.188 0.053 NK_HLA L2
ENSG00000173846 PLK3 -477134 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 109788 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 869254 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -81951 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 933361 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 673094 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 955169 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -663479 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117408 IPO13 376293 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 348756 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -32017 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -520010 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -687707 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 617419 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -351238 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -688081 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 353243 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -452008 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 331884 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 933435 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -477134 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 109788 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 869254 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -81951 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 933361 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -351449 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -485239 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 955169 eQTL 0.0261 0.0702 0.0315 0.0 0.0 0.0682
ENSG00000117399 CDC20 964262 eQTL 0.0468 0.0538 0.027 0.00101 0.0 0.0682
ENSG00000117408 IPO13 376293 eQTL 7.28e-06 0.141 0.0313 0.0 0.0 0.0682
ENSG00000117410 ATP6V0B 348756 eQTL 0.00141 0.0593 0.0185 0.0 0.0 0.0682
ENSG00000142949 PTPRF 798056 pQTL 0.00374 -0.146 0.0502 0.0 0.0 0.0726
ENSG00000159214 CCDC24 331884 eQTL 0.00494 0.201 0.0713 0.0 0.0 0.0682
ENSG00000178028 DMAP1 109788 eQTL 3.1500000000000004e-36 -0.487 0.0371 0.00117 0.00224 0.0682
ENSG00000229431 AL139289.1 938130 eQTL 0.00505 0.213 0.0757 0.00182 0.0 0.0682

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 955169 2.66e-07 1.11e-07 3.62e-08 1.86e-07 9.65e-08 9.71e-08 1.38e-07 5.49e-08 1.41e-07 4.4e-08 1.62e-07 7.75e-08 1.3e-07 6.21e-08 5.53e-08 7.89e-08 4.63e-08 1.14e-07 5.21e-08 4.03e-08 1.04e-07 1.28e-07 1.26e-07 4.53e-08 1.31e-07 1.19e-07 1.12e-07 9.36e-08 1.02e-07 1.09e-07 9.91e-08 3.87e-08 3.35e-08 8.82e-08 8.98e-08 3.96e-08 4.95e-08 9.62e-08 6.56e-08 4.55e-08 4.88e-08 1.35e-07 4.1e-08 7.35e-09 5.59e-08 1.67e-08 1.23e-07 3.83e-09 4.94e-08
ENSG00000117399 CDC20 964262 2.66e-07 1.11e-07 3.62e-08 1.86e-07 9.65e-08 9.57e-08 1.41e-07 5.49e-08 1.41e-07 4.4e-08 1.56e-07 7.75e-08 1.3e-07 6.21e-08 5.55e-08 7.89e-08 4.63e-08 1.14e-07 5.21e-08 4.03e-08 1.04e-07 1.28e-07 1.26e-07 4.53e-08 1.31e-07 1.19e-07 1.12e-07 9.32e-08 1.02e-07 1.09e-07 9.91e-08 4.09e-08 3.16e-08 8.82e-08 8.98e-08 3.97e-08 5.11e-08 9.65e-08 6.78e-08 4.55e-08 4.36e-08 1.35e-07 4.1e-08 7.43e-09 5.59e-08 1.67e-08 1.23e-07 3.83e-09 4.94e-08
ENSG00000117408 IPO13 376293 7.57e-07 7.58e-07 1.11e-07 5.17e-07 1.07e-07 2.67e-07 6.06e-07 1.11e-07 6.27e-07 2.72e-07 1.09e-06 4.55e-07 9.97e-07 1.58e-07 3.1e-07 2.1e-07 3.35e-07 4.16e-07 2.88e-07 1.87e-07 2.41e-07 3.95e-07 4.12e-07 1.32e-07 1.16e-06 2.54e-07 2.72e-07 4.06e-07 3.99e-07 5.28e-07 4.59e-07 4.21e-08 1.04e-07 1.69e-07 3.23e-07 1.28e-07 2.79e-07 1.16e-07 7.56e-08 2.49e-07 1.79e-07 7.2e-07 5.98e-08 1.14e-07 2e-07 1.48e-08 1.21e-07 8.25e-08 8.44e-08
ENSG00000117410 ATP6V0B 348756 8.48e-07 8.81e-07 1.48e-07 9.36e-07 9.86e-08 3.26e-07 6.72e-07 1.56e-07 8.29e-07 3.16e-07 1.26e-06 5.4e-07 1.3e-06 2.14e-07 3.94e-07 2.89e-07 5.34e-07 4.72e-07 3.64e-07 3.11e-07 2.8e-07 5.18e-07 4.69e-07 1.94e-07 1.49e-06 2.54e-07 4.16e-07 4.96e-07 5.41e-07 6.98e-07 5.37e-07 3.77e-08 1.48e-07 2.22e-07 3.66e-07 1.82e-07 3.62e-07 1.5e-07 1.56e-07 3.15e-07 2.19e-07 9.5e-07 6.23e-08 1.33e-07 1.83e-07 3.5e-08 1.18e-07 8.74e-08 1.23e-07
ENSG00000132768 \N 353243 8.35e-07 8.81e-07 1.23e-07 7.82e-07 9.45e-08 3.36e-07 6.52e-07 1.55e-07 8.32e-07 3.1e-07 1.26e-06 5.28e-07 1.22e-06 2.06e-07 3.61e-07 2.85e-07 4.87e-07 4.52e-07 3.5e-07 2.86e-07 2.86e-07 5.2e-07 4.66e-07 1.76e-07 1.47e-06 2.57e-07 3.93e-07 4.92e-07 5.03e-07 6.73e-07 4.9e-07 3.7e-08 1.36e-07 2.04e-07 3e-07 1.55e-07 3.77e-07 1.38e-07 1.61e-07 3.1e-07 2.39e-07 9.49e-07 6.81e-08 1.32e-07 1.84e-07 3.41e-08 1.1e-07 8.51e-08 1.12e-07
ENSG00000178028 DMAP1 109788 5.92e-06 9.38e-06 6.5e-07 5.05e-06 1.49e-06 2.56e-06 9.36e-06 1.29e-06 7.7e-06 3.49e-06 1.04e-05 3.93e-06 1.13e-05 3.66e-06 1.52e-06 4.64e-06 3.13e-06 3.85e-06 1.81e-06 1.92e-06 3.08e-06 7.58e-06 5.31e-06 1.99e-06 1.03e-05 2.14e-06 3.61e-06 2.96e-06 6.66e-06 6.17e-06 4.33e-06 5.86e-07 8.05e-07 2.14e-06 3.16e-06 1.16e-06 1.11e-06 8.19e-07 1.25e-06 9.72e-07 6.91e-07 9.28e-06 1.13e-06 1.44e-07 8.27e-07 1.05e-06 1.14e-06 6.92e-07 6.17e-07