Genes within 1Mb (chr1:44310192:AG:A):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 660043 sc-eQTL 5.81e-01 -0.123 0.223 0.05 NK_HLA L2
ENSG00000066322 ELOVL1 942118 sc-eQTL 6.14e-01 0.107 0.212 0.05 NK_HLA L2
ENSG00000070785 EIF2B3 -676530 sc-eQTL 4.92e-01 0.149 0.216 0.05 NK_HLA L2
ENSG00000117408 IPO13 363242 sc-eQTL 8.17e-01 -0.0471 0.203 0.05 NK_HLA L2
ENSG00000117410 ATP6V0B 335705 sc-eQTL 6.07e-01 -0.108 0.21 0.05 NK_HLA L2
ENSG00000117411 B4GALT2 331249 sc-eQTL 5.10e-01 -0.129 0.195 0.05 NK_HLA L2
ENSG00000117419 ERI3 -45068 sc-eQTL 3.50e-01 -0.204 0.218 0.05 NK_HLA L2
ENSG00000126088 UROD -700758 sc-eQTL 2.13e-02 0.501 0.216 0.05 NK_HLA L2
ENSG00000126091 ST3GAL3 604368 sc-eQTL 1.74e-01 0.294 0.216 0.05 NK_HLA L2
ENSG00000126106 TMEM53 -364289 sc-eQTL 4.41e-01 0.16 0.207 0.05 NK_HLA L2
ENSG00000126107 HECTD3 -701132 sc-eQTL 1.54e-01 0.329 0.23 0.05 NK_HLA L2
ENSG00000132768 DPH2 340192 sc-eQTL 5.86e-01 -0.122 0.223 0.05 NK_HLA L2
ENSG00000142937 RPS8 -465059 sc-eQTL 6.69e-02 0.173 0.0938 0.05 NK_HLA L2
ENSG00000159214 CCDC24 318833 sc-eQTL 1.95e-01 -0.26 0.2 0.05 NK_HLA L2
ENSG00000159479 MED8 920384 sc-eQTL 5.00e-01 -0.157 0.232 0.05 NK_HLA L2
ENSG00000162415 ZSWIM5 -996017 sc-eQTL 1.43e-01 0.283 0.192 0.05 NK_HLA L2
ENSG00000173846 PLK3 -490185 sc-eQTL 6.90e-01 0.0781 0.196 0.05 NK_HLA L2
ENSG00000178028 DMAP1 96737 sc-eQTL 8.85e-01 0.0319 0.22 0.05 NK_HLA L2
ENSG00000178922 HYI 856203 sc-eQTL 7.07e-01 0.079 0.21 0.05 NK_HLA L2
ENSG00000187147 RNF220 -95002 sc-eQTL 1.50e-01 0.272 0.188 0.05 NK_HLA L2
ENSG00000198198 SZT2 920310 sc-eQTL 9.44e-01 0.0131 0.187 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 942118 eQTL 0.027 0.0698 0.0315 0.0 0.0 0.0687
ENSG00000117399 CDC20 951211 eQTL 0.0469 0.0538 0.027 0.00102 0.0 0.0687
ENSG00000117408 IPO13 363242 eQTL 6.87e-06 0.142 0.0313 0.0 0.0 0.0687
ENSG00000117410 ATP6V0B 335705 eQTL 0.0013 0.0597 0.0185 0.0 0.0 0.0687
ENSG00000142949 PTPRF 785005 pQTL 0.00361 -0.146 0.0501 0.0 0.0 0.0737
ENSG00000159214 CCDC24 318833 eQTL 0.00454 0.203 0.0713 0.0 0.0 0.0687
ENSG00000178028 DMAP1 96737 eQTL 2.21e-36 -0.487 0.0371 0.00186 0.00345 0.0687
ENSG00000229431 AL139289.1 925079 eQTL 0.00518 0.212 0.0757 0.00181 0.0 0.0687


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 942118 2.67e-07 2.4e-07 4.08e-08 3.77e-07 9.16e-08 8.85e-08 2.5e-07 5.33e-08 1.71e-07 5.67e-08 5.29e-07 1.08e-07 1.87e-07 8.07e-08 6e-08 7.37e-08 5.27e-08 1.44e-07 5.97e-08 3.88e-08 1.18e-07 1.31e-07 1.45e-07 4.05e-08 1.98e-07 1.25e-07 1.08e-07 9.61e-08 1.2e-07 2.19e-07 1.26e-07 3.19e-08 2.74e-08 8.7e-08 4.78e-08 3.94e-08 5.11e-08 9.26e-08 8.3e-08 3.98e-08 3.46e-08 3.66e-07 4.7e-08 1.94e-08 8.16e-08 1.84e-08 1.26e-07 4.82e-09 4.74e-08
ENSG00000117399 CDC20 951211 2.74e-07 2.4e-07 4.08e-08 3.66e-07 9.16e-08 8.4e-08 2.5e-07 5.33e-08 1.71e-07 5.67e-08 5.29e-07 1.05e-07 1.79e-07 8.07e-08 6e-08 7.37e-08 4.63e-08 1.44e-07 5.75e-08 3.89e-08 1.18e-07 1.31e-07 1.45e-07 4.16e-08 1.98e-07 1.25e-07 1.08e-07 9.61e-08 1.2e-07 2.1e-07 1.26e-07 3.19e-08 2.74e-08 8.7e-08 4.78e-08 3.94e-08 5.08e-08 9.2e-08 8.3e-08 3.77e-08 3.58e-08 3.55e-07 4.52e-08 1.92e-08 8.16e-08 1.83e-08 1.26e-07 4.82e-09 4.74e-08
ENSG00000117408 IPO13 363242 1.25e-06 1.19e-06 2.15e-07 1.51e-06 2.05e-07 7.28e-07 1.5e-06 1.37e-07 1.14e-06 3.28e-07 2.06e-06 5.98e-07 2.01e-06 2.55e-07 3e-07 2.45e-07 9.2e-07 5.54e-07 3.84e-07 1.17e-07 7.59e-07 1.2e-06 6.18e-07 3.06e-07 2.01e-06 4.32e-07 4e-07 3.78e-07 1.28e-06 1.16e-06 6.16e-07 3.92e-08 5.6e-08 5.45e-07 6.22e-07 3.47e-07 3.4e-07 9.33e-08 5.86e-08 2.94e-07 4.36e-08 2.75e-06 5.37e-08 1.54e-07 1.69e-07 9.85e-08 1.23e-07 2e-09 5.16e-08
ENSG00000117410 ATP6V0B 335705 1.27e-06 1.42e-06 2.77e-07 1.8e-06 2.71e-07 7.9e-07 1.38e-06 1.65e-07 1.32e-06 3.82e-07 1.93e-06 6.61e-07 2.34e-06 2.55e-07 3.72e-07 3.36e-07 9.26e-07 5.88e-07 4.65e-07 1.73e-07 7.86e-07 1.42e-06 7.96e-07 4.09e-07 2.27e-06 6.17e-07 4.9e-07 4.7e-07 1.45e-06 1.26e-06 7.05e-07 3.64e-08 5.63e-08 6.99e-07 5.3e-07 4.66e-07 4.52e-07 9.84e-08 5.67e-08 2.42e-07 4.69e-08 3.34e-06 8.31e-08 1.68e-07 1.89e-07 1.25e-07 1.47e-07 0.0 5.15e-08
ENSG00000132768 \N 340192 1.2e-06 1.33e-06 2.95e-07 1.74e-06 2.71e-07 8.1e-07 1.41e-06 1.62e-07 1.28e-06 3.82e-07 1.86e-06 6.58e-07 2.27e-06 2.76e-07 3.56e-07 2.89e-07 8.82e-07 5.36e-07 4.49e-07 1.63e-07 7.6e-07 1.36e-06 7.95e-07 3.62e-07 2.3e-06 6.01e-07 4.71e-07 4.59e-07 1.48e-06 1.31e-06 6.68e-07 3.87e-08 5.47e-08 6.83e-07 5.25e-07 4.34e-07 4.77e-07 1.07e-07 4.44e-08 2.8e-07 5.45e-08 3.26e-06 6.13e-08 1.69e-07 1.89e-07 1.22e-07 1.43e-07 2.23e-09 5.54e-08
ENSG00000178028 DMAP1 96737 7.08e-06 1.23e-05 3.83e-06 6.7e-06 2.7e-06 5.49e-06 1.45e-05 1.25e-06 9.16e-06 4.26e-06 1.15e-05 5.09e-06 1.5e-05 2.99e-06 3.49e-06 5.33e-06 6.5e-06 6.61e-06 2.65e-06 2.44e-06 6.71e-06 9.17e-06 9.78e-06 3.25e-06 1.29e-05 4.65e-06 3.63e-06 3.68e-06 1.34e-05 9.18e-06 4.13e-06 4.02e-07 1.27e-06 3.1e-06 5.03e-06 2.82e-06 1.89e-06 2e-06 1.36e-06 2.17e-06 8.13e-07 1.71e-05 2.39e-06 7.5e-07 1.02e-06 2.69e-06 1.39e-06 1.29e-06 6.24e-07