Genes within 1Mb (chr1:44271056:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 620907 sc-eQTL 5.81e-01 -0.123 0.223 0.05 NK_HLA L2
ENSG00000066322 ELOVL1 902982 sc-eQTL 6.14e-01 0.107 0.212 0.05 NK_HLA L2
ENSG00000070785 EIF2B3 -715666 sc-eQTL 4.92e-01 0.149 0.216 0.05 NK_HLA L2
ENSG00000117408 IPO13 324106 sc-eQTL 8.17e-01 -0.0471 0.203 0.05 NK_HLA L2
ENSG00000117410 ATP6V0B 296569 sc-eQTL 6.07e-01 -0.108 0.21 0.05 NK_HLA L2
ENSG00000117411 B4GALT2 292113 sc-eQTL 5.10e-01 -0.129 0.195 0.05 NK_HLA L2
ENSG00000117419 ERI3 -84204 sc-eQTL 3.50e-01 -0.204 0.218 0.05 NK_HLA L2
ENSG00000126088 UROD -739894 sc-eQTL 2.13e-02 0.501 0.216 0.05 NK_HLA L2
ENSG00000126091 ST3GAL3 565232 sc-eQTL 1.74e-01 0.294 0.216 0.05 NK_HLA L2
ENSG00000126106 TMEM53 -403425 sc-eQTL 4.41e-01 0.16 0.207 0.05 NK_HLA L2
ENSG00000126107 HECTD3 -740268 sc-eQTL 1.54e-01 0.329 0.23 0.05 NK_HLA L2
ENSG00000132768 DPH2 301056 sc-eQTL 5.86e-01 -0.122 0.223 0.05 NK_HLA L2
ENSG00000142937 RPS8 -504195 sc-eQTL 6.69e-02 0.173 0.0938 0.05 NK_HLA L2
ENSG00000159214 CCDC24 279697 sc-eQTL 1.95e-01 -0.26 0.2 0.05 NK_HLA L2
ENSG00000159479 MED8 881248 sc-eQTL 5.00e-01 -0.157 0.232 0.05 NK_HLA L2
ENSG00000173846 PLK3 -529321 sc-eQTL 6.90e-01 0.0781 0.196 0.05 NK_HLA L2
ENSG00000178028 DMAP1 57601 sc-eQTL 8.85e-01 0.0319 0.22 0.05 NK_HLA L2
ENSG00000178922 HYI 817067 sc-eQTL 7.07e-01 0.079 0.21 0.05 NK_HLA L2
ENSG00000187147 RNF220 -134138 sc-eQTL 1.50e-01 0.272 0.188 0.05 NK_HLA L2
ENSG00000198198 SZT2 881174 sc-eQTL 9.44e-01 0.0131 0.187 0.05 NK_HLA L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 902982 eQTL 0.0323 0.0671 0.0313 0.0 0.0 0.0702
ENSG00000117399 CDC20 912075 eQTL 0.0482 0.0531 0.0268 0.00101 0.0 0.0702
ENSG00000117408 IPO13 324106 eQTL 5.12e-06 0.143 0.0311 0.0 0.0 0.0702
ENSG00000117410 ATP6V0B 296569 eQTL 0.000762 0.0621 0.0184 0.0 0.0 0.0702
ENSG00000117411 B4GALT2 292113 eQTL 0.11 0.0798 0.0499 0.00103 0.0 0.0702
ENSG00000142949 PTPRF 745869 pQTL 0.00339 -0.146 0.0496 0.0 0.0 0.0748
ENSG00000159214 CCDC24 279697 eQTL 0.00309 0.21 0.0708 0.0 0.0 0.0702
ENSG00000178028 DMAP1 57601 eQTL 7.17e-37 -0.487 0.0368 0.0125 0.0173 0.0702
ENSG00000229431 AL139289.1 885943 eQTL 0.00561 0.209 0.0752 0.00177 0.0 0.0702


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 902982 2.64e-07 1.11e-07 3.59e-08 1.82e-07 8.92e-08 9.71e-08 1.38e-07 5.33e-08 1.4e-07 4.38e-08 1.59e-07 7.75e-08 1.33e-07 6.21e-08 5.55e-08 7.5e-08 4.48e-08 1.14e-07 5.19e-08 4.2e-08 1.04e-07 1.28e-07 1.26e-07 4.16e-08 1.33e-07 1.19e-07 1.12e-07 8.7e-08 1.02e-07 1.11e-07 9.73e-08 3.94e-08 2.74e-08 8.65e-08 8.87e-08 3.77e-08 4.84e-08 9.68e-08 7.2e-08 3.54e-08 4.83e-08 1.35e-07 3.99e-08 1.97e-08 6.92e-08 1.7e-08 1.25e-07 4.09e-09 4.79e-08
ENSG00000117399 CDC20 912075 2.61e-07 1.11e-07 3.59e-08 1.82e-07 8.92e-08 9.71e-08 1.38e-07 5.33e-08 1.41e-07 4.38e-08 1.59e-07 7.75e-08 1.3e-07 6.21e-08 5.55e-08 7.5e-08 4.48e-08 1.14e-07 5.19e-08 4.03e-08 1.04e-07 1.28e-07 1.26e-07 4.13e-08 1.33e-07 1.19e-07 1.12e-07 8.7e-08 1.02e-07 1.11e-07 9.73e-08 3.96e-08 2.74e-08 8.65e-08 8.93e-08 3.96e-08 4.84e-08 9.55e-08 7.2e-08 3.18e-08 4.6e-08 1.35e-07 3.99e-08 2.03e-08 6.92e-08 1.7e-08 1.25e-07 4.09e-09 4.79e-08
ENSG00000117408 IPO13 324106 1.01e-06 7.58e-07 1.23e-07 3.19e-07 9.33e-08 2.63e-07 6.08e-07 1.48e-07 6.03e-07 2.82e-07 9.46e-07 4.31e-07 9.97e-07 1.54e-07 2.35e-07 2.84e-07 4.29e-07 4.22e-07 2.56e-07 1.86e-07 2.35e-07 4.14e-07 4.13e-07 2.65e-07 1.22e-06 2.7e-07 3.26e-07 2.65e-07 4.13e-07 7.71e-07 3.79e-07 4.06e-08 5.58e-08 1.9e-07 3.61e-07 1.55e-07 1.43e-07 1.06e-07 7.63e-08 8.29e-09 8.42e-08 7.52e-07 5.51e-08 5.74e-09 1.48e-07 1.27e-08 1.01e-07 1.77e-08 4.71e-08
ENSG00000117410 ATP6V0B 296569 1.29e-06 8.72e-07 1.54e-07 3.89e-07 1.09e-07 3.41e-07 7.02e-07 2.03e-07 8.32e-07 3.12e-07 1.09e-06 5.28e-07 1.28e-06 2.06e-07 3.13e-07 4.14e-07 5.64e-07 4.52e-07 2.92e-07 2.68e-07 2.55e-07 5.34e-07 5.21e-07 3.56e-07 1.53e-06 2.64e-07 4.62e-07 3.24e-07 5.43e-07 9.11e-07 4.61e-07 3.67e-08 4.55e-08 2.72e-07 3.26e-07 2.78e-07 2.36e-07 1.16e-07 1.33e-07 9.61e-09 1.16e-07 1.01e-06 6.44e-08 1.24e-08 1.92e-07 1.52e-08 1.1e-07 3.13e-08 6.46e-08
ENSG00000132768 \N 301056 1.25e-06 9.07e-07 1.55e-07 3.6e-07 1.07e-07 3.32e-07 6.72e-07 1.91e-07 7.56e-07 3.16e-07 1.07e-06 5.22e-07 1.21e-06 1.97e-07 3.15e-07 3.96e-07 5.63e-07 4.44e-07 2.88e-07 2.76e-07 2.42e-07 5.37e-07 4.77e-07 3.29e-07 1.49e-06 2.49e-07 4.37e-07 2.98e-07 5.41e-07 8.63e-07 4.47e-07 4.5e-08 4.42e-08 2.33e-07 3.26e-07 2.56e-07 2.04e-07 1.27e-07 1.56e-07 9.44e-09 1.04e-07 9.58e-07 6.3e-08 1.23e-08 1.81e-07 1.48e-08 1.23e-07 3.05e-08 6.26e-08
ENSG00000178028 DMAP1 57601 7.83e-06 9.59e-06 1.22e-06 5e-06 1.87e-06 3.9e-06 9.61e-06 1.51e-06 7.35e-06 4.2e-06 1.07e-05 4.98e-06 1.22e-05 3.81e-06 1.54e-06 5.79e-06 3.74e-06 5.6e-06 2.5e-06 2.53e-06 4.38e-06 7.66e-06 6.71e-06 2.87e-06 1.27e-05 2.91e-06 4.35e-06 2.54e-06 7e-06 7.96e-06 4.84e-06 8.07e-07 8.41e-07 2.85e-06 3.75e-06 2.07e-06 1.63e-06 1.66e-06 1.59e-06 1.02e-06 8.99e-07 1.15e-05 1.26e-06 1.44e-07 7.18e-07 1.01e-06 9.05e-07 6.33e-07 6.22e-07