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Genes within 1Mb (chr1:44262892:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 612743 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 894818 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -723830 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 991956 sc-eQTL 3.51e-01 -0.229 0.245 0.051 B_Activated L2
ENSG00000117408 IPO13 315942 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 288405 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 283949 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -92368 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -580361 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -748058 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 557068 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -411589 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -748432 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 292892 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -512359 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 271533 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 873084 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -537485 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 49437 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 808903 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -142302 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 873010 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -411800 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 612743 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 894818 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -723830 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117395 EBNA1BP2 991956 sc-eQTL 8.46e-01 0.0436 0.225 0.053 NK_HLA L2
ENSG00000117408 IPO13 315942 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 288405 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 283949 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -92368 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -748058 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 557068 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -411589 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -748432 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 292892 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -512359 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 271533 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 873084 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000173846 PLK3 -537485 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 49437 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 808903 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -142302 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 873010 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 612743 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 894818 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -723830 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117395 EBNA1BP2 991956 sc-eQTL 5.80e-01 -0.118 0.213 0.051 intMono L2
ENSG00000117408 IPO13 315942 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 288405 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -92368 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -580361 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -748058 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 557068 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -411589 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -748432 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 292892 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -512359 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 271533 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 873084 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -537485 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 49437 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 808903 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -142302 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 873010 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -411800 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -545590 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 894818 eQTL 0.0324 0.0671 0.0313 0.0 0.0 0.0702
ENSG00000117399 CDC20 903911 eQTL 0.0486 0.053 0.0268 0.001 0.0 0.0702
ENSG00000117408 IPO13 315942 eQTL 5.18e-06 0.143 0.0311 0.0 0.0 0.0702
ENSG00000117410 ATP6V0B 288405 eQTL 0.000811 0.0618 0.0184 0.0 0.0 0.0702
ENSG00000117411 B4GALT2 283949 eQTL 0.112 0.0794 0.0499 0.00102 0.0 0.0702
ENSG00000142949 PTPRF 737705 pQTL 0.00344 -0.145 0.0496 0.0 0.0 0.0748
ENSG00000159214 CCDC24 271533 eQTL 0.00313 0.21 0.0708 0.0 0.0 0.0702
ENSG00000178028 DMAP1 49437 eQTL 6.96e-37 -0.487 0.0368 0.0127 0.0174 0.0702
ENSG00000229431 AL139289.1 877779 eQTL 0.00561 0.209 0.0752 0.00177 0.0 0.0702

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 894818 2.74e-07 1.19e-07 3.88e-08 1.82e-07 9.21e-08 9.65e-08 1.49e-07 5.37e-08 1.44e-07 4.74e-08 1.62e-07 8.59e-08 1.41e-07 6.56e-08 5.99e-08 7.3e-08 3.98e-08 1.26e-07 5.36e-08 4.42e-08 1.04e-07 1.27e-07 1.34e-07 3.42e-08 1.4e-07 1.14e-07 1.06e-07 9.36e-08 1.08e-07 1.07e-07 9.64e-08 3.92e-08 3.3e-08 8.55e-08 8.74e-08 3.93e-08 5.01e-08 9.61e-08 7.2e-08 3.55e-08 3.59e-08 1.33e-07 4.33e-08 2.48e-08 5.75e-08 1.66e-08 1.19e-07 3.99e-09 4.81e-08
ENSG00000117399 CDC20 903911 2.69e-07 1.19e-07 3.69e-08 1.82e-07 9.21e-08 9.65e-08 1.44e-07 5.37e-08 1.44e-07 4.74e-08 1.62e-07 8.59e-08 1.41e-07 6.38e-08 6e-08 7.37e-08 3.98e-08 1.21e-07 5.36e-08 4.42e-08 1.04e-07 1.27e-07 1.34e-07 3.68e-08 1.37e-07 1.14e-07 1.06e-07 9.36e-08 1.08e-07 1.07e-07 9.64e-08 3.94e-08 3.3e-08 8.68e-08 8.74e-08 3.93e-08 5.03e-08 9.61e-08 7.23e-08 3.55e-08 3.59e-08 1.33e-07 4.14e-08 2.55e-08 5.75e-08 1.66e-08 1.22e-07 3.99e-09 4.85e-08
ENSG00000117408 IPO13 315942 1.26e-06 8.47e-07 1.63e-07 3.81e-07 1.16e-07 3.26e-07 7.32e-07 2.7e-07 8.36e-07 3.17e-07 1.09e-06 5.48e-07 1.3e-06 1.98e-07 3.72e-07 4.12e-07 6.29e-07 5.12e-07 3.36e-07 3.06e-07 2.41e-07 5.66e-07 5.66e-07 3.56e-07 1.49e-06 2.38e-07 4.71e-07 3.89e-07 7.07e-07 8.89e-07 4.47e-07 4.75e-08 8.37e-08 2.46e-07 3.35e-07 2.04e-07 1.82e-07 1.14e-07 8.06e-08 8.29e-09 1.45e-07 1.01e-06 5.44e-08 5.74e-09 1.91e-07 2.71e-08 1.45e-07 2.41e-08 5.26e-08
ENSG00000117410 ATP6V0B 288405 1.26e-06 9.27e-07 2.62e-07 3.55e-07 1.87e-07 3.69e-07 9.97e-07 3.2e-07 1.11e-06 3.11e-07 1.26e-06 5.73e-07 1.55e-06 2.19e-07 4.3e-07 5.75e-07 7.68e-07 5.72e-07 3.77e-07 4.38e-07 2.89e-07 8.66e-07 7.16e-07 5.25e-07 1.79e-06 2.9e-07 5.76e-07 4.94e-07 9.32e-07 1.02e-06 4.9e-07 4.47e-08 1.35e-07 3.78e-07 3.42e-07 2.96e-07 2.9e-07 1.32e-07 1.54e-07 9.5e-09 2.19e-07 1.26e-06 6.3e-08 1.26e-08 1.69e-07 4.53e-08 1.97e-07 5.66e-08 6.27e-08
ENSG00000132768 \N 292892 1.26e-06 8.81e-07 2.15e-07 3.38e-07 1.77e-07 3.3e-07 9.74e-07 2.98e-07 1.03e-06 2.77e-07 1.22e-06 5.77e-07 1.49e-06 2.05e-07 4.21e-07 5.49e-07 7.78e-07 5.67e-07 4e-07 4.19e-07 2.82e-07 8.11e-07 6.93e-07 4.83e-07 1.71e-06 2.7e-07 5.49e-07 4.77e-07 8.97e-07 9.93e-07 4.65e-07 3.51e-08 1.31e-07 3.58e-07 3.27e-07 3.05e-07 2.57e-07 1.21e-07 1.41e-07 1.86e-08 2.38e-07 1.22e-06 6.18e-08 1.24e-08 1.84e-07 4.38e-08 1.77e-07 3.84e-08 4.96e-08
ENSG00000178028 DMAP1 49437 7.22e-06 8.23e-06 1.3e-06 3.95e-06 2.22e-06 3.46e-06 9.38e-06 1.49e-06 5.94e-06 4.05e-06 9.08e-06 3.93e-06 1.13e-05 3.5e-06 1.69e-06 5.43e-06 3.76e-06 5.37e-06 2.58e-06 2.65e-06 4.21e-06 7.66e-06 6.85e-06 3.3e-06 1.15e-05 2.92e-06 3.64e-06 2.51e-06 8.33e-06 8e-06 4.24e-06 7.97e-07 1.21e-06 2.98e-06 2.89e-06 2.15e-06 1.71e-06 1.85e-06 1.61e-06 1.03e-06 9.98e-07 9.18e-06 8.57e-07 1.76e-07 6.8e-07 1.13e-06 1.06e-06 7.34e-07 4.54e-07