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Genes within 1Mb (chr1:44239270:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 589121 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 871196 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -747452 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 968334 sc-eQTL 3.51e-01 -0.229 0.245 0.051 B_Activated L2
ENSG00000117408 IPO13 292320 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 264783 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 260327 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -115990 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -603983 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -771680 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 533446 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -435211 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -772054 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 269270 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -535981 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 247911 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 849462 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -561107 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 25815 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 785281 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -165924 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 849388 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -435422 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 589121 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 871196 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -747452 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117395 EBNA1BP2 968334 sc-eQTL 8.46e-01 0.0436 0.225 0.053 NK_HLA L2
ENSG00000117408 IPO13 292320 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 264783 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 260327 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -115990 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -771680 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 533446 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -435211 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -772054 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 269270 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -535981 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 247911 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 849462 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000173846 PLK3 -561107 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 25815 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 785281 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -165924 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 849388 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 589121 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 871196 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -747452 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117395 EBNA1BP2 968334 sc-eQTL 5.80e-01 -0.118 0.213 0.051 intMono L2
ENSG00000117408 IPO13 292320 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 264783 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -115990 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -603983 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -771680 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 533446 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -435211 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -772054 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 269270 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -535981 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 247911 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 849462 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -561107 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 25815 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 785281 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -165924 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 849388 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -435422 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -569212 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 871196 eQTL 0.0369 0.0649 0.0311 0.0 0.0 0.0702
ENSG00000117399 CDC20 880289 eQTL 0.0496 0.0524 0.0266 0.0 0.0 0.0702
ENSG00000117408 IPO13 292320 eQTL 4.6e-06 0.142 0.0309 0.0 0.0 0.0702
ENSG00000117410 ATP6V0B 264783 eQTL 0.000643 0.0625 0.0182 0.0 0.0 0.0702
ENSG00000117411 B4GALT2 260327 eQTL 0.0945 0.0829 0.0495 0.00111 0.0 0.0702
ENSG00000142949 PTPRF 714083 pQTL 0.00341 -0.144 0.0491 0.0 0.0 0.0751
ENSG00000159214 CCDC24 247911 eQTL 0.00254 0.213 0.0702 0.0 0.0 0.0702
ENSG00000178028 DMAP1 25815 eQTL 5.18e-37 -0.485 0.0365 0.0239 0.028 0.0702
ENSG00000229431 AL139289.1 854157 eQTL 0.00623 0.205 0.0746 0.0017 0.0 0.0702

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 871196 2.67e-07 1.25e-07 3.88e-08 1.86e-07 8.83e-08 9.61e-08 1.42e-07 5.19e-08 1.4e-07 4.4e-08 1.56e-07 8.36e-08 1.33e-07 6.38e-08 6e-08 7.17e-08 3.9e-08 1.18e-07 5.36e-08 4.45e-08 1.04e-07 1.26e-07 1.32e-07 3.68e-08 1.37e-07 1.14e-07 1.08e-07 9.32e-08 1.05e-07 1.12e-07 9.91e-08 3.64e-08 3.16e-08 8.55e-08 7.02e-08 3.93e-08 5.03e-08 9.26e-08 6.55e-08 3.71e-08 5.42e-08 1.35e-07 4.04e-08 1.24e-08 5.87e-08 1.83e-08 1.22e-07 3.8e-09 4.85e-08
ENSG00000117399 CDC20 880289 2.67e-07 1.19e-07 3.69e-08 1.86e-07 8.83e-08 9.87e-08 1.42e-07 5.19e-08 1.4e-07 4.4e-08 1.56e-07 8.14e-08 1.33e-07 6.38e-08 6e-08 7.17e-08 3.9e-08 1.18e-07 5.36e-08 4.45e-08 1.04e-07 1.26e-07 1.32e-07 3.79e-08 1.37e-07 1.14e-07 1.08e-07 9.32e-08 1.05e-07 1.12e-07 9.91e-08 3.87e-08 3.16e-08 8.68e-08 7.36e-08 3.93e-08 5.02e-08 9.25e-08 6.56e-08 3.71e-08 5.14e-08 1.35e-07 4.1e-08 1.27e-08 5.87e-08 1.83e-08 1.24e-07 3.81e-09 4.85e-08
ENSG00000117408 IPO13 292320 1.26e-06 9.15e-07 2.52e-07 7e-07 1.16e-07 4.11e-07 1.02e-06 3.34e-07 1.08e-06 2.81e-07 1.25e-06 5.82e-07 1.47e-06 2.72e-07 4.49e-07 5.29e-07 7.43e-07 5.67e-07 3.98e-07 4.52e-07 2.29e-07 7.73e-07 6.26e-07 5.01e-07 1.93e-06 2.4e-07 6.38e-07 5e-07 8e-07 9.73e-07 5.23e-07 4.57e-08 1.48e-07 3.66e-07 5.17e-07 3.35e-07 2.96e-07 1.51e-07 1.46e-07 8.76e-08 2.37e-07 1.3e-06 6.68e-08 3.39e-08 1.96e-07 7.29e-08 1.78e-07 8.35e-08 5.47e-08
ENSG00000117410 ATP6V0B 264783 1.28e-06 1.01e-06 2.81e-07 1.1e-06 2.05e-07 4.57e-07 1.32e-06 3.38e-07 1.2e-06 3.77e-07 1.36e-06 6.02e-07 1.76e-06 2.73e-07 4.55e-07 7.13e-07 8.4e-07 5.5e-07 5.29e-07 6.76e-07 3.24e-07 1.17e-06 8.1e-07 5.86e-07 2.16e-06 2.89e-07 7.27e-07 6.23e-07 1.04e-06 1.21e-06 5.72e-07 4.99e-08 2.34e-07 5.53e-07 5.38e-07 4.34e-07 4.21e-07 1.61e-07 2.9e-07 2.45e-07 3.17e-07 1.53e-06 6.12e-08 5.7e-08 1.8e-07 1.02e-07 1.87e-07 8.73e-08 6.51e-08
ENSG00000132768 \N 269270 1.26e-06 9.2e-07 3.02e-07 1.02e-06 1.79e-07 4.46e-07 1.24e-06 3.46e-07 1.15e-06 3.87e-07 1.41e-06 5.98e-07 1.68e-06 2.55e-07 4.35e-07 6.94e-07 8.28e-07 5.57e-07 5.07e-07 6.7e-07 2.93e-07 1.08e-06 7.78e-07 5.82e-07 2.06e-06 3.02e-07 6.91e-07 5.8e-07 9.81e-07 1.11e-06 5.48e-07 4.91e-08 2.29e-07 5.39e-07 5.92e-07 4.15e-07 4.13e-07 1.58e-07 2.44e-07 2.29e-07 2.77e-07 1.59e-06 7.66e-08 5.67e-08 1.89e-07 9.94e-08 2.01e-07 7.75e-08 6.27e-08
ENSG00000178028 DMAP1 25815 1.59e-05 2.24e-05 3.08e-06 1.17e-05 2.97e-06 8.2e-06 2.32e-05 3.36e-06 1.77e-05 8.88e-06 2.28e-05 9.08e-06 3.11e-05 7.61e-06 5.19e-06 1.02e-05 9.14e-06 1.43e-05 4.98e-06 4.2e-06 8.13e-06 1.73e-05 1.77e-05 5.14e-06 2.93e-05 5.31e-06 8e-06 7.64e-06 1.77e-05 1.58e-05 1.28e-05 1.2e-06 1.46e-06 4.35e-06 8.5e-06 3.97e-06 1.89e-06 2.73e-06 3.09e-06 2.1e-06 1.21e-06 2.34e-05 2.48e-06 2.66e-07 1.15e-06 2.8e-06 2.95e-06 1.06e-06 8.17e-07