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Genes within 1Mb (chr1:44207613:CCTGA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 557464 sc-eQTL 2.40e-01 0.258 0.219 0.051 CD8_TCM L2
ENSG00000066322 ELOVL1 839539 sc-eQTL 8.47e-01 -0.0431 0.223 0.051 CD8_TCM L2
ENSG00000070785 EIF2B3 -779109 sc-eQTL 1.99e-02 0.519 0.221 0.051 CD8_TCM L2
ENSG00000117395 EBNA1BP2 936677 sc-eQTL 4.96e-02 -0.437 0.221 0.051 CD8_TCM L2
ENSG00000117408 IPO13 260663 sc-eQTL 1.92e-01 -0.273 0.209 0.051 CD8_TCM L2
ENSG00000117410 ATP6V0B 233126 sc-eQTL 8.15e-01 -0.0431 0.184 0.051 CD8_TCM L2
ENSG00000117419 ERI3 -147647 sc-eQTL 6.04e-01 0.119 0.228 0.051 CD8_TCM L2
ENSG00000126088 UROD -803337 sc-eQTL 7.44e-01 -0.071 0.217 0.051 CD8_TCM L2
ENSG00000126091 ST3GAL3 501789 sc-eQTL 7.09e-01 0.0835 0.223 0.051 CD8_TCM L2
ENSG00000126107 HECTD3 -803711 sc-eQTL 8.64e-01 -0.0393 0.229 0.051 CD8_TCM L2
ENSG00000132768 DPH2 237613 sc-eQTL 4.96e-01 -0.15 0.22 0.051 CD8_TCM L2
ENSG00000142937 RPS8 -567638 sc-eQTL 8.28e-02 0.199 0.114 0.051 CD8_TCM L2
ENSG00000159479 MED8 817805 sc-eQTL 7.05e-01 0.0798 0.21 0.051 CD8_TCM L2
ENSG00000173846 PLK3 -592764 sc-eQTL 1.25e-01 -0.233 0.152 0.051 CD8_TCM L2
ENSG00000178028 DMAP1 -5842 sc-eQTL 1.94e-01 -0.297 0.228 0.051 CD8_TCM L2
ENSG00000178922 HYI 753624 sc-eQTL 5.19e-01 -0.132 0.205 0.051 CD8_TCM L2
ENSG00000187147 RNF220 -197581 sc-eQTL 7.05e-01 0.0725 0.191 0.051 CD8_TCM L2
ENSG00000198198 SZT2 817731 sc-eQTL 3.72e-01 0.182 0.204 0.051 CD8_TCM L2
ENSG00000198520 ARMH1 -467079 sc-eQTL 6.43e-01 0.0853 0.183 0.051 CD8_TCM L2
ENSG00000066135 KDM4A 557464 sc-eQTL 8.61e-01 0.0368 0.21 0.05 Pro_T L2
ENSG00000066322 ELOVL1 839539 sc-eQTL 7.95e-01 -0.0459 0.177 0.05 Pro_T L2
ENSG00000070785 EIF2B3 -779109 sc-eQTL 9.60e-01 -0.00928 0.183 0.05 Pro_T L2
ENSG00000117395 EBNA1BP2 936677 sc-eQTL 4.95e-01 -0.099 0.145 0.05 Pro_T L2
ENSG00000117399 CDC20 848632 sc-eQTL 9.77e-01 0.00345 0.119 0.05 Pro_T L2
ENSG00000117408 IPO13 260663 sc-eQTL 6.15e-01 0.105 0.208 0.05 Pro_T L2
ENSG00000117410 ATP6V0B 233126 sc-eQTL 9.25e-01 -0.0112 0.12 0.05 Pro_T L2
ENSG00000117411 B4GALT2 228670 sc-eQTL 1.34e-01 0.234 0.156 0.05 Pro_T L2
ENSG00000117419 ERI3 -147647 sc-eQTL 5.87e-01 -0.107 0.196 0.05 Pro_T L2
ENSG00000126088 UROD -803337 sc-eQTL 9.53e-01 0.01 0.171 0.05 Pro_T L2
ENSG00000126091 ST3GAL3 501789 sc-eQTL 3.64e-01 0.175 0.192 0.05 Pro_T L2
ENSG00000126106 TMEM53 -466868 sc-eQTL 6.21e-01 0.096 0.194 0.05 Pro_T L2
ENSG00000126107 HECTD3 -803711 sc-eQTL 7.17e-02 0.355 0.196 0.05 Pro_T L2
ENSG00000132768 DPH2 237613 sc-eQTL 7.84e-01 -0.053 0.193 0.05 Pro_T L2
ENSG00000142937 RPS8 -567638 sc-eQTL 2.12e-01 0.104 0.083 0.05 Pro_T L2
ENSG00000142945 KIF2C -532205 sc-eQTL 1.53e-01 0.187 0.13 0.05 Pro_T L2
ENSG00000159479 MED8 817805 sc-eQTL 3.55e-01 0.154 0.166 0.05 Pro_T L2
ENSG00000173846 PLK3 -592764 sc-eQTL 2.50e-01 0.203 0.176 0.05 Pro_T L2
ENSG00000178028 DMAP1 -5842 sc-eQTL 7.17e-01 -0.0778 0.215 0.05 Pro_T L2
ENSG00000178922 HYI 753624 sc-eQTL 1.79e-01 0.223 0.165 0.05 Pro_T L2
ENSG00000187147 RNF220 -197581 sc-eQTL 9.35e-01 -0.0132 0.16 0.05 Pro_T L2
ENSG00000198198 SZT2 817731 sc-eQTL 3.12e-02 0.416 0.192 0.05 Pro_T L2
ENSG00000198520 ARMH1 -467079 sc-eQTL 9.95e-01 0.000899 0.137 0.05 Pro_T L2
ENSG00000066135 KDM4A 557464 sc-eQTL 5.07e-01 -0.183 0.276 0.052 gdT L2
ENSG00000066322 ELOVL1 839539 sc-eQTL 8.22e-01 0.0609 0.271 0.052 gdT L2
ENSG00000070785 EIF2B3 -779109 sc-eQTL 8.56e-01 0.0473 0.261 0.052 gdT L2
ENSG00000117395 EBNA1BP2 936677 sc-eQTL 4.19e-01 0.22 0.271 0.052 gdT L2
ENSG00000117399 CDC20 848632 sc-eQTL 5.45e-01 0.111 0.183 0.052 gdT L2
ENSG00000117408 IPO13 260663 sc-eQTL 9.58e-01 -0.0137 0.257 0.052 gdT L2
ENSG00000117410 ATP6V0B 233126 sc-eQTL 8.76e-01 0.0366 0.233 0.052 gdT L2
ENSG00000117411 B4GALT2 228670 sc-eQTL 7.61e-03 0.636 0.235 0.052 gdT L2
ENSG00000117419 ERI3 -147647 sc-eQTL 4.10e-01 -0.233 0.282 0.052 gdT L2
ENSG00000126088 UROD -803337 sc-eQTL 1.71e-01 0.326 0.237 0.052 gdT L2
ENSG00000126091 ST3GAL3 501789 sc-eQTL 5.54e-02 -0.495 0.256 0.052 gdT L2
ENSG00000126106 TMEM53 -466868 sc-eQTL 5.31e-01 -0.152 0.242 0.052 gdT L2
ENSG00000126107 HECTD3 -803711 sc-eQTL 6.32e-01 -0.133 0.276 0.052 gdT L2
ENSG00000132768 DPH2 237613 sc-eQTL 7.13e-01 -0.0942 0.255 0.052 gdT L2
ENSG00000142937 RPS8 -567638 sc-eQTL 8.06e-01 0.0252 0.102 0.052 gdT L2
ENSG00000142945 KIF2C -532205 sc-eQTL 3.36e-01 0.146 0.151 0.052 gdT L2
ENSG00000159479 MED8 817805 sc-eQTL 4.01e-01 0.217 0.257 0.052 gdT L2
ENSG00000173846 PLK3 -592764 sc-eQTL 2.82e-01 -0.186 0.173 0.052 gdT L2
ENSG00000178028 DMAP1 -5842 sc-eQTL 8.97e-01 -0.0335 0.259 0.052 gdT L2
ENSG00000178922 HYI 753624 sc-eQTL 7.50e-01 -0.0855 0.267 0.052 gdT L2
ENSG00000187147 RNF220 -197581 sc-eQTL 1.17e-01 0.335 0.213 0.052 gdT L2
ENSG00000198198 SZT2 817731 sc-eQTL 6.09e-01 -0.125 0.245 0.052 gdT L2
ENSG00000198520 ARMH1 -467079 sc-eQTL 8.15e-01 -0.0549 0.234 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000126091 ST3GAL3 501789 eQTL 0.0298 0.0781 0.0359 0.0 0.0 0.0471
ENSG00000126106 TMEM53 -466868 eQTL 0.0488 0.122 0.062 0.00183 0.0 0.0471
ENSG00000159214 CCDC24 216254 eQTL 9.88e-05 0.33 0.0845 0.0 0.0 0.0471
ENSG00000198520 ARMH1 -467100 eQTL 0.0225 0.0973 0.0426 0.00121 0.0 0.0471
ENSG00000230615 AL139220.2 177170 eQTL 0.012 -0.181 0.0717 0.0 0.0 0.0471

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117411 \N 228670 4.9e-06 2.53e-06 2.73e-07 2.02e-06 3.5e-07 6.63e-07 1.8e-06 2.98e-07 1.72e-06 7.11e-07 1.87e-06 1.2e-06 2.68e-06 3.39e-07 8.73e-07 1.63e-06 1.11e-06 2.24e-06 6.7e-07 4.81e-07 7.78e-07 2e-06 2.61e-06 5.79e-07 2.57e-06 7.54e-07 1.02e-06 8.36e-07 1.67e-06 2.22e-06 8.35e-07 5.45e-08 5.3e-08 5.61e-07 6.99e-07 6.69e-07 7.33e-07 1.51e-07 4.57e-07 9.03e-08 2.84e-08 3.43e-06 3.34e-07 5.67e-08 1.93e-07 3.66e-07 2.27e-07 1.13e-08 6.32e-08
ENSG00000159214 CCDC24 216254 4.89e-06 3.09e-06 3e-07 1.93e-06 3.69e-07 6.74e-07 2.08e-06 3.28e-07 1.78e-06 7.41e-07 1.99e-06 1.29e-06 2.88e-06 4.66e-07 9.33e-07 1.88e-06 1.04e-06 2.2e-06 7.13e-07 6.02e-07 9.29e-07 1.92e-06 2.69e-06 7.1e-07 3.3e-06 7.53e-07 9.97e-07 9.82e-07 1.84e-06 2.57e-06 7.9e-07 4.31e-08 5.95e-08 6.34e-07 8.33e-07 8.65e-07 7.47e-07 1.26e-07 4.8e-07 1.92e-07 4.49e-08 3.93e-06 4.15e-07 6.51e-08 1.73e-07 3.58e-07 2.9e-07 1.28e-08 5.55e-08
ENSG00000178922 \N 753624 8.25e-07 2.4e-07 6.45e-08 2.27e-07 9.16e-08 8.33e-08 3.7e-07 5.33e-08 1.5e-07 6.4e-08 1.61e-07 8.55e-08 2.38e-07 7.37e-08 6.18e-08 8.71e-08 4.31e-08 2.56e-07 7.42e-08 4.04e-08 1.22e-07 1.56e-07 2.67e-07 3.42e-08 2.28e-07 1.26e-07 1.1e-07 9.74e-08 1.39e-07 1.46e-07 1.08e-07 3.88e-08 2.74e-08 8e-08 3.52e-08 2.68e-08 5.37e-08 9.13e-08 6.54e-08 3.01e-08 3.77e-08 2.71e-07 4.04e-08 1.7e-08 9.21e-08 6.68e-09 1.22e-07 4.7e-09 4.85e-08