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Genes within 1Mb (chr1:44204945:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 554796 sc-eQTL 9.19e-01 0.0242 0.237 0.051 B_Activated L2
ENSG00000066322 ELOVL1 836871 sc-eQTL 7.40e-01 0.0813 0.245 0.051 B_Activated L2
ENSG00000070785 EIF2B3 -781777 sc-eQTL 1.45e-01 0.329 0.225 0.051 B_Activated L2
ENSG00000117395 EBNA1BP2 934009 sc-eQTL 3.51e-01 -0.229 0.245 0.051 B_Activated L2
ENSG00000117408 IPO13 257995 sc-eQTL 9.31e-01 0.0182 0.211 0.051 B_Activated L2
ENSG00000117410 ATP6V0B 230458 sc-eQTL 8.28e-01 -0.0453 0.208 0.051 B_Activated L2
ENSG00000117411 B4GALT2 226002 sc-eQTL 2.25e-01 -0.235 0.193 0.051 B_Activated L2
ENSG00000117419 ERI3 -150315 sc-eQTL 1.48e-01 -0.355 0.244 0.051 B_Activated L2
ENSG00000117425 PTCH2 -638308 sc-eQTL 5.30e-01 -0.0864 0.137 0.051 B_Activated L2
ENSG00000126088 UROD -806005 sc-eQTL 1.85e-01 0.315 0.236 0.051 B_Activated L2
ENSG00000126091 ST3GAL3 499121 sc-eQTL 4.08e-01 -0.183 0.221 0.051 B_Activated L2
ENSG00000126106 TMEM53 -469536 sc-eQTL 4.50e-01 0.152 0.2 0.051 B_Activated L2
ENSG00000126107 HECTD3 -806379 sc-eQTL 5.46e-01 0.139 0.23 0.051 B_Activated L2
ENSG00000132768 DPH2 234945 sc-eQTL 2.79e-01 -0.251 0.231 0.051 B_Activated L2
ENSG00000142937 RPS8 -570306 sc-eQTL 2.99e-01 0.123 0.118 0.051 B_Activated L2
ENSG00000159214 CCDC24 213586 sc-eQTL 7.26e-01 -0.0699 0.199 0.051 B_Activated L2
ENSG00000159479 MED8 815137 sc-eQTL 4.76e-01 0.164 0.23 0.051 B_Activated L2
ENSG00000173846 PLK3 -595432 sc-eQTL 3.74e-01 0.191 0.215 0.051 B_Activated L2
ENSG00000178028 DMAP1 -8510 sc-eQTL 4.27e-01 -0.193 0.242 0.051 B_Activated L2
ENSG00000178922 HYI 750956 sc-eQTL 2.99e-01 -0.234 0.224 0.051 B_Activated L2
ENSG00000187147 RNF220 -200249 sc-eQTL 8.32e-01 0.0469 0.22 0.051 B_Activated L2
ENSG00000198198 SZT2 815063 sc-eQTL 7.63e-01 0.066 0.219 0.051 B_Activated L2
ENSG00000198520 ARMH1 -469747 sc-eQTL 7.55e-02 -0.383 0.214 0.051 B_Activated L2
ENSG00000066135 KDM4A 554796 sc-eQTL 5.68e-01 -0.125 0.218 0.053 NK_HLA L2
ENSG00000066322 ELOVL1 836871 sc-eQTL 4.68e-01 0.151 0.207 0.053 NK_HLA L2
ENSG00000070785 EIF2B3 -781777 sc-eQTL 3.84e-01 0.184 0.211 0.053 NK_HLA L2
ENSG00000117395 EBNA1BP2 934009 sc-eQTL 8.46e-01 0.0436 0.225 0.053 NK_HLA L2
ENSG00000117408 IPO13 257995 sc-eQTL 8.54e-01 -0.0365 0.198 0.053 NK_HLA L2
ENSG00000117410 ATP6V0B 230458 sc-eQTL 5.39e-01 -0.126 0.205 0.053 NK_HLA L2
ENSG00000117411 B4GALT2 226002 sc-eQTL 5.51e-01 -0.114 0.191 0.053 NK_HLA L2
ENSG00000117419 ERI3 -150315 sc-eQTL 4.43e-01 -0.164 0.214 0.053 NK_HLA L2
ENSG00000126088 UROD -806005 sc-eQTL 1.28e-02 0.528 0.21 0.053 NK_HLA L2
ENSG00000126091 ST3GAL3 499121 sc-eQTL 1.65e-01 0.294 0.211 0.053 NK_HLA L2
ENSG00000126106 TMEM53 -469536 sc-eQTL 5.50e-01 0.121 0.202 0.053 NK_HLA L2
ENSG00000126107 HECTD3 -806379 sc-eQTL 1.96e-01 0.292 0.225 0.053 NK_HLA L2
ENSG00000132768 DPH2 234945 sc-eQTL 8.02e-01 -0.0547 0.218 0.053 NK_HLA L2
ENSG00000142937 RPS8 -570306 sc-eQTL 4.00e-02 0.189 0.0914 0.053 NK_HLA L2
ENSG00000159214 CCDC24 213586 sc-eQTL 1.46e-01 -0.285 0.195 0.053 NK_HLA L2
ENSG00000159479 MED8 815137 sc-eQTL 3.98e-01 -0.192 0.227 0.053 NK_HLA L2
ENSG00000173846 PLK3 -595432 sc-eQTL 5.82e-01 0.105 0.191 0.053 NK_HLA L2
ENSG00000178028 DMAP1 -8510 sc-eQTL 9.83e-01 -0.00468 0.215 0.053 NK_HLA L2
ENSG00000178922 HYI 750956 sc-eQTL 7.32e-01 0.0703 0.205 0.053 NK_HLA L2
ENSG00000187147 RNF220 -200249 sc-eQTL 3.13e-01 0.186 0.184 0.053 NK_HLA L2
ENSG00000198198 SZT2 815063 sc-eQTL 8.75e-01 -0.0287 0.182 0.053 NK_HLA L2
ENSG00000066135 KDM4A 554796 sc-eQTL 4.44e-01 0.163 0.213 0.051 intMono L2
ENSG00000066322 ELOVL1 836871 sc-eQTL 4.32e-01 0.147 0.187 0.051 intMono L2
ENSG00000070785 EIF2B3 -781777 sc-eQTL 4.45e-01 -0.164 0.214 0.051 intMono L2
ENSG00000117395 EBNA1BP2 934009 sc-eQTL 5.80e-01 -0.118 0.213 0.051 intMono L2
ENSG00000117408 IPO13 257995 sc-eQTL 1.01e-01 -0.327 0.198 0.051 intMono L2
ENSG00000117410 ATP6V0B 230458 sc-eQTL 7.10e-01 -0.048 0.129 0.051 intMono L2
ENSG00000117419 ERI3 -150315 sc-eQTL 6.32e-01 -0.101 0.211 0.051 intMono L2
ENSG00000117425 PTCH2 -638308 sc-eQTL 2.87e-01 0.186 0.174 0.051 intMono L2
ENSG00000126088 UROD -806005 sc-eQTL 4.21e-01 -0.168 0.209 0.051 intMono L2
ENSG00000126091 ST3GAL3 499121 sc-eQTL 9.50e-01 -0.0126 0.202 0.051 intMono L2
ENSG00000126106 TMEM53 -469536 sc-eQTL 3.75e-01 0.175 0.197 0.051 intMono L2
ENSG00000126107 HECTD3 -806379 sc-eQTL 4.64e-01 0.151 0.206 0.051 intMono L2
ENSG00000132768 DPH2 234945 sc-eQTL 8.84e-01 -0.0299 0.205 0.051 intMono L2
ENSG00000142937 RPS8 -570306 sc-eQTL 7.29e-01 0.0306 0.0881 0.051 intMono L2
ENSG00000159214 CCDC24 213586 sc-eQTL 4.44e-01 0.148 0.193 0.051 intMono L2
ENSG00000159479 MED8 815137 sc-eQTL 1.02e-01 0.273 0.166 0.051 intMono L2
ENSG00000173846 PLK3 -595432 sc-eQTL 2.18e-01 -0.18 0.146 0.051 intMono L2
ENSG00000178028 DMAP1 -8510 sc-eQTL 1.86e-02 -0.492 0.207 0.051 intMono L2
ENSG00000178922 HYI 750956 sc-eQTL 1.27e-01 -0.295 0.193 0.051 intMono L2
ENSG00000187147 RNF220 -200249 sc-eQTL 8.79e-01 -0.0283 0.185 0.051 intMono L2
ENSG00000198198 SZT2 815063 sc-eQTL 9.92e-01 -0.00196 0.2 0.051 intMono L2
ENSG00000198520 ARMH1 -469747 sc-eQTL 5.46e-01 0.129 0.214 0.051 intMono L2
ENSG00000222009 BTBD19 -603537 sc-eQTL 8.51e-02 -0.337 0.194 0.051 intMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066322 ELOVL1 836871 eQTL 0.0394 0.0639 0.031 0.0 0.0 0.0702
ENSG00000117408 IPO13 257995 eQTL 4.16e-06 0.142 0.0307 0.0 0.0 0.0702
ENSG00000117410 ATP6V0B 230458 eQTL 0.000573 0.0628 0.0182 0.0 0.0 0.0702
ENSG00000117411 B4GALT2 226002 eQTL 0.086 0.0848 0.0493 0.00117 0.0 0.0702
ENSG00000142949 PTPRF 679758 pQTL 0.00344 -0.143 0.0489 0.0 0.0 0.0751
ENSG00000159214 CCDC24 213586 eQTL 0.00228 0.214 0.07 0.0 0.0 0.0702
ENSG00000178028 DMAP1 -8510 eQTL 4.6300000000000005e-37 -0.483 0.0364 0.0359 0.0381 0.0702
ENSG00000229431 AL139289.1 819832 eQTL 0.00632 0.204 0.0744 0.0017 0.0 0.0702

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066322 ELOVL1 836871 2.91e-07 1.53e-07 5.35e-08 2.05e-07 1.01e-07 8.21e-08 1.99e-07 5.85e-08 1.5e-07 6.08e-08 1.62e-07 1.15e-07 1.87e-07 8.13e-08 5.82e-08 7.74e-08 4.31e-08 1.56e-07 7.12e-08 4.92e-08 1.27e-07 1.31e-07 1.58e-07 2.68e-08 1.85e-07 1.23e-07 1.12e-07 9.92e-08 1.26e-07 1.05e-07 1.07e-07 2.96e-08 3.51e-08 8.7e-08 3.4e-08 2.95e-08 5.8e-08 8.76e-08 6.42e-08 4.47e-08 4.69e-08 1.5e-07 4.7e-08 1.43e-08 3.84e-08 1.92e-08 1.2e-07 1.89e-09 4.99e-08
ENSG00000117399 \N 845964 2.77e-07 1.5e-07 5.49e-08 2.05e-07 9.79e-08 8.21e-08 1.99e-07 5.85e-08 1.5e-07 6.08e-08 1.59e-07 1.11e-07 1.79e-07 7.95e-08 5.72e-08 7.74e-08 4.31e-08 1.51e-07 7.12e-08 4.8e-08 1.27e-07 1.26e-07 1.58e-07 2.83e-08 1.72e-07 1.23e-07 1.12e-07 9.92e-08 1.26e-07 1.05e-07 1.07e-07 2.93e-08 3.51e-08 8.7e-08 3.81e-08 2.69e-08 5.7e-08 8.63e-08 6.42e-08 4.47e-08 4.94e-08 1.48e-07 4.87e-08 1.43e-08 4.25e-08 1.92e-08 1.21e-07 1.88e-09 5e-08
ENSG00000117408 IPO13 257995 1.59e-06 2.2e-06 2.66e-07 1.32e-06 3.69e-07 6.45e-07 1.29e-06 3.95e-07 1.71e-06 6.98e-07 1.93e-06 1.3e-06 2.68e-06 5.06e-07 4.03e-07 9.77e-07 1.1e-06 1.16e-06 5.81e-07 4.81e-07 6.61e-07 1.92e-06 1.55e-06 6.43e-07 2.43e-06 8.55e-07 1.06e-06 8.69e-07 1.7e-06 1.36e-06 8.07e-07 2.7e-07 2.96e-07 5.53e-07 7.35e-07 5.24e-07 7.3e-07 3.16e-07 4.98e-07 3.34e-07 2.72e-07 2.35e-06 3.7e-07 2.07e-07 3.22e-07 2.31e-07 2.27e-07 8.15e-08 1.6e-07
ENSG00000132768 \N 234945 1.87e-06 2.68e-06 2.75e-07 1.54e-06 4.27e-07 7.68e-07 1.33e-06 4.95e-07 1.78e-06 6.94e-07 1.96e-06 1.45e-06 3.23e-06 8.74e-07 3.84e-07 1.1e-06 9.22e-07 1.33e-06 5.52e-07 6.52e-07 6.53e-07 1.96e-06 1.75e-06 9.49e-07 2.69e-06 1.1e-06 1.1e-06 1.08e-06 1.72e-06 1.61e-06 8.48e-07 2.31e-07 3.56e-07 7.48e-07 9.05e-07 6.59e-07 7.12e-07 3.43e-07 6.97e-07 2.04e-07 2.71e-07 2.89e-06 4.14e-07 2.15e-07 2.85e-07 3.19e-07 3.34e-07 1.45e-07 1.97e-07
ENSG00000178028 DMAP1 -8510 3.49e-05 3.37e-05 6.49e-06 1.6e-05 6.21e-06 1.57e-05 4.55e-05 5.19e-06 3.38e-05 1.69e-05 4.15e-05 1.91e-05 5.21e-05 1.45e-05 7.47e-06 2.07e-05 1.83e-05 2.66e-05 8.31e-06 7.35e-06 1.65e-05 3.53e-05 3.3e-05 9.82e-06 4.78e-05 8.49e-06 1.6e-05 1.4e-05 3.42e-05 2.71e-05 2.17e-05 1.63e-06 2.9e-06 7.83e-06 1.27e-05 6.19e-06 3.43e-06 3.27e-06 5.29e-06 3.57e-06 1.79e-06 3.92e-05 3.58e-06 4.41e-07 2.71e-06 4.53e-06 4.52e-06 1.71e-06 1.47e-06