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Genes within 1Mb (chr1:44067199:C:CA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066135 KDM4A 417050 sc-eQTL 4.03e-01 -0.18 0.214 0.05 CD4_CTL L2
ENSG00000066322 ELOVL1 699125 sc-eQTL 4.41e-01 0.155 0.201 0.05 CD4_CTL L2
ENSG00000070785 EIF2B3 -919523 sc-eQTL 1.34e-02 -0.531 0.213 0.05 CD4_CTL L2
ENSG00000117395 EBNA1BP2 796263 sc-eQTL 8.49e-01 0.0418 0.22 0.05 CD4_CTL L2
ENSG00000117408 IPO13 120249 sc-eQTL 1.44e-01 -0.292 0.199 0.05 CD4_CTL L2
ENSG00000117410 ATP6V0B 92712 sc-eQTL 1.54e-01 0.29 0.203 0.05 CD4_CTL L2
ENSG00000117419 ERI3 -288061 sc-eQTL 3.67e-01 -0.196 0.216 0.05 CD4_CTL L2
ENSG00000126088 UROD -943751 sc-eQTL 8.41e-01 0.0433 0.215 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 361375 sc-eQTL 4.79e-01 -0.153 0.215 0.05 CD4_CTL L2
ENSG00000126107 HECTD3 -944125 sc-eQTL 7.76e-01 0.0591 0.207 0.05 CD4_CTL L2
ENSG00000132768 DPH2 97199 sc-eQTL 7.83e-02 0.371 0.209 0.05 CD4_CTL L2
ENSG00000142937 RPS8 -708052 sc-eQTL 3.10e-03 -0.258 0.0863 0.05 CD4_CTL L2
ENSG00000159479 MED8 677391 sc-eQTL 4.74e-01 0.146 0.204 0.05 CD4_CTL L2
ENSG00000173846 PLK3 -733178 sc-eQTL 9.00e-01 -0.0196 0.156 0.05 CD4_CTL L2
ENSG00000178028 DMAP1 -146256 sc-eQTL 3.72e-01 -0.197 0.221 0.05 CD4_CTL L2
ENSG00000178922 HYI 613210 sc-eQTL 7.09e-01 0.0705 0.189 0.05 CD4_CTL L2
ENSG00000187147 RNF220 -337995 sc-eQTL 8.85e-01 -0.0254 0.175 0.05 CD4_CTL L2
ENSG00000198198 SZT2 677317 sc-eQTL 2.87e-01 -0.216 0.203 0.05 CD4_CTL L2
ENSG00000198520 ARMH1 -607493 sc-eQTL 6.84e-02 0.29 0.158 0.05 CD4_CTL L2
ENSG00000066135 KDM4A 417050 sc-eQTL 5.55e-01 0.143 0.241 0.058 gdT L2
ENSG00000066322 ELOVL1 699125 sc-eQTL 7.69e-01 0.0697 0.237 0.058 gdT L2
ENSG00000070785 EIF2B3 -919523 sc-eQTL 6.25e-01 -0.111 0.228 0.058 gdT L2
ENSG00000117395 EBNA1BP2 796263 sc-eQTL 7.71e-01 0.0693 0.238 0.058 gdT L2
ENSG00000117399 CDC20 708218 sc-eQTL 7.12e-01 0.0594 0.16 0.058 gdT L2
ENSG00000117408 IPO13 120249 sc-eQTL 1.78e-03 0.691 0.217 0.058 gdT L2
ENSG00000117410 ATP6V0B 92712 sc-eQTL 4.39e-01 -0.158 0.204 0.058 gdT L2
ENSG00000117411 B4GALT2 88256 sc-eQTL 6.14e-01 -0.106 0.21 0.058 gdT L2
ENSG00000117419 ERI3 -288061 sc-eQTL 7.44e-01 0.081 0.247 0.058 gdT L2
ENSG00000126088 UROD -943751 sc-eQTL 9.94e-01 0.0017 0.209 0.058 gdT L2
ENSG00000126091 ST3GAL3 361375 sc-eQTL 7.20e-02 -0.407 0.224 0.058 gdT L2
ENSG00000126106 TMEM53 -607282 sc-eQTL 5.41e-01 -0.13 0.212 0.058 gdT L2
ENSG00000126107 HECTD3 -944125 sc-eQTL 9.62e-01 0.0114 0.242 0.058 gdT L2
ENSG00000132768 DPH2 97199 sc-eQTL 6.98e-01 -0.0869 0.223 0.058 gdT L2
ENSG00000142937 RPS8 -708052 sc-eQTL 3.84e-01 -0.0778 0.0892 0.058 gdT L2
ENSG00000142945 KIF2C -672619 sc-eQTL 9.50e-01 0.00834 0.132 0.058 gdT L2
ENSG00000159479 MED8 677391 sc-eQTL 3.28e-01 -0.221 0.224 0.058 gdT L2
ENSG00000173846 PLK3 -733178 sc-eQTL 6.96e-01 0.0592 0.151 0.058 gdT L2
ENSG00000178028 DMAP1 -146256 sc-eQTL 1.34e-01 0.338 0.225 0.058 gdT L2
ENSG00000178922 HYI 613210 sc-eQTL 6.55e-01 0.105 0.234 0.058 gdT L2
ENSG00000187147 RNF220 -337995 sc-eQTL 3.33e-01 0.182 0.187 0.058 gdT L2
ENSG00000198198 SZT2 677317 sc-eQTL 9.29e-01 0.019 0.214 0.058 gdT L2
ENSG00000198520 ARMH1 -607493 sc-eQTL 2.64e-01 0.228 0.204 0.058 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117407 ARTN 133879 pQTL 0.0234 0.14 0.0616 0.00153 0.0 0.0397
ENSG00000159214 CCDC24 75840 eQTL 2.5e-06 -0.396 0.0836 0.0 0.0 0.0422
ENSG00000178028 DMAP1 -146256 eQTL 4.44e-05 0.194 0.0472 0.0 0.0 0.0422

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 \N 766217 1.2e-06 1.31e-06 3.23e-07 3.63e-07 1.05e-07 3.12e-07 1.13e-06 5.62e-08 3.51e-07 2.16e-07 1.35e-06 2.04e-07 1.76e-06 2.29e-07 4.03e-07 2.45e-07 8e-07 5.45e-07 2.65e-07 8.1e-08 2.52e-07 9.92e-07 3.99e-07 4.25e-08 1.95e-06 2.55e-07 4.55e-07 2.19e-07 4.76e-07 5.82e-07 3.79e-07 3.92e-08 4.74e-08 3.82e-07 3.6e-07 4.95e-08 2.83e-07 7.63e-08 5.89e-08 6.92e-08 3.31e-08 1.86e-06 2.28e-08 1.57e-07 3.4e-08 7.64e-08 8.24e-08 4.04e-09 4.85e-08
ENSG00000117425 \N -776054 1.23e-06 1.24e-06 3.2e-07 3.77e-07 1.07e-07 3.18e-07 1.13e-06 5.85e-08 3.17e-07 2.14e-07 1.35e-06 1.91e-07 1.73e-06 2.33e-07 3.9e-07 2.23e-07 7.93e-07 5.57e-07 2.57e-07 8.31e-08 2.3e-07 9.58e-07 4.08e-07 3.83e-08 1.93e-06 2.49e-07 4.25e-07 2.18e-07 4.39e-07 5.56e-07 3.77e-07 3.94e-08 4.34e-08 3.58e-07 3.54e-07 4.86e-08 2.59e-07 7.61e-08 5.7e-08 6.67e-08 3.2e-08 1.71e-06 2.94e-08 1.66e-07 3.36e-08 6.12e-08 8.01e-08 4.09e-09 4.85e-08
ENSG00000159214 CCDC24 75840 2.13e-05 3.73e-05 7.06e-06 4.32e-06 2.45e-06 5.36e-06 1.84e-05 9.79e-07 1e-05 4.06e-06 1.84e-05 5.61e-06 2.36e-05 5.92e-06 5.36e-06 9e-06 8.33e-06 9.78e-06 2.3e-06 1.33e-06 5.16e-06 1.94e-05 1.03e-05 2.68e-06 2.99e-05 3.62e-06 7.57e-06 3.74e-06 1.27e-05 7.86e-06 6.59e-06 4.88e-07 7.31e-07 2.31e-06 4.56e-06 1.15e-06 1.08e-06 2.02e-06 9.23e-07 3.88e-07 7.52e-07 5.06e-05 1.61e-06 1.58e-07 7.85e-07 1.74e-06 1.47e-06 2.87e-07 1.41e-07
ENSG00000178028 DMAP1 -146256 1.2e-05 2.16e-05 3.38e-06 3.67e-06 1.65e-06 3.91e-06 1.04e-05 6.75e-07 5.38e-06 2.59e-06 1.19e-05 3.25e-06 1.32e-05 3.56e-06 4.15e-06 6.58e-06 5.59e-06 6.49e-06 1.44e-06 8.98e-07 3.66e-06 1.18e-05 6.24e-06 1.65e-06 2.07e-05 2.19e-06 4.65e-06 1.71e-06 6.99e-06 6.51e-06 4.12e-06 3.28e-07 6.52e-07 1.53e-06 2.6e-06 8.93e-07 1e-06 6.03e-07 1.32e-06 3.46e-07 4.69e-07 3.61e-05 1.19e-06 2.1e-07 5.79e-07 1.48e-06 9.45e-07 2.25e-07 2.8e-07