Genes within 1Mb (chr1:43999747:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066056 TIE1 698765 eQTL 1.97e-02 -0.11 0.0471 0.0 0.0 0.121
ENSG00000117407 ARTN 66427 eQTL 9.55e-05 -0.236 0.0602 0.0 0.0 0.121
ENSG00000117410 ATP6V0B 25260 eQTL 2.44e-03 -0.0431 0.0142 0.0 0.0 0.121
ENSG00000126106 TMEM53 -674734 eQTL 4.19e-02 -0.0813 0.0399 0.0 0.0 0.121
ENSG00000132768 DPH2 29747 eQTL 4.23e-03 -0.0564 0.0197 0.0 0.0 0.121
ENSG00000142949 PTPRF 474560 eQTL 2.26e-02 0.0972 0.0425 0.0 0.0 0.121
ENSG00000159214 CCDC24 8388 eQTL 5.58e-13 -0.39 0.0533 0.0 0.0 0.121
ENSG00000173846 PLK3 -800630 eQTL 2.88e-03 0.0525 0.0176 0.0 0.0 0.121
ENSG00000188396 TCTEX1D4 -806928 eQTL 1.54e-02 0.0501 0.0206 0.0 0.0 0.121
ENSG00000198198 SZT2 609865 eQTL 2.35e-02 -0.0412 0.0182 0.00126 0.0 0.121
ENSG00000222009 BTBD19 -808735 eQTL 1.85e-02 0.0537 0.0227 0.0 0.0 0.121
ENSG00000225721 AL592166.1 -776063 eQTL 8.57e-03 0.145 0.0552 0.0 0.0 0.121


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117407 ARTN 66427 9.25e-06 1.26e-05 1.26e-06 8.01e-06 2.21e-06 4.28e-06 1.11e-05 2.12e-06 1.03e-05 5.42e-06 1.3e-05 5.74e-06 2.3e-05 4.15e-06 3.46e-06 6.44e-06 4.98e-06 7.14e-06 2.61e-06 2.92e-06 5.12e-06 9.54e-06 8.72e-06 3.28e-06 1.58e-05 3.49e-06 4.87e-06 4.45e-06 9.97e-06 8.58e-06 7.59e-06 9.97e-07 1.31e-06 3.53e-06 5.63e-06 2.56e-06 1.85e-06 1.95e-06 2.13e-06 1.73e-06 9.94e-07 1.48e-05 1.49e-06 1.54e-07 8.11e-07 1.63e-06 1.32e-06 6.95e-07 5.6e-07
ENSG00000117410 ATP6V0B 25260 1.59e-05 2.24e-05 3.08e-06 1.33e-05 2.97e-06 7.88e-06 2.42e-05 3.4e-06 1.81e-05 8.98e-06 2.26e-05 8.78e-06 3.98e-05 9.95e-06 5.26e-06 1.03e-05 1.02e-05 1.44e-05 4.73e-06 5.18e-06 8.31e-06 1.73e-05 1.85e-05 5.75e-06 2.97e-05 5.37e-06 7.99e-06 8.02e-06 1.81e-05 1.68e-05 1.31e-05 1.26e-06 1.61e-06 5.67e-06 9.03e-06 3.97e-06 2.34e-06 2.79e-06 3.98e-06 3.2e-06 1.59e-06 2.65e-05 2.67e-06 1.5e-07 1.15e-06 2.61e-06 2.8e-06 8.47e-07 6.16e-07
ENSG00000132768 DPH2 29747 1.48e-05 2.1e-05 2.95e-06 1.29e-05 2.6e-06 7.21e-06 2.24e-05 3.25e-06 1.72e-05 8.27e-06 2.09e-05 8.22e-06 3.83e-05 9.13e-06 5.16e-06 9.57e-06 9.13e-06 1.26e-05 4.36e-06 4.75e-06 7.66e-06 1.55e-05 1.73e-05 5.15e-06 2.78e-05 5.01e-06 7.72e-06 7.68e-06 1.67e-05 1.58e-05 1.28e-05 1.12e-06 1.44e-06 5.28e-06 8.64e-06 3.76e-06 2.04e-06 2.73e-06 3.71e-06 3.08e-06 1.46e-06 2.46e-05 2.68e-06 1.75e-07 8.89e-07 2.49e-06 2.51e-06 8.11e-07 5.7e-07
ENSG00000159214 CCDC24 8388 3.12e-05 3.04e-05 5.75e-06 1.55e-05 5.29e-06 1.31e-05 4.07e-05 4.24e-06 2.82e-05 1.38e-05 3.44e-05 1.55e-05 4.85e-05 1.35e-05 6.68e-06 1.64e-05 1.56e-05 2.28e-05 7.49e-06 6.6e-06 1.36e-05 2.88e-05 2.92e-05 8.57e-06 4.05e-05 7.23e-06 1.21e-05 1.18e-05 2.94e-05 2.4e-05 1.87e-05 1.62e-06 2.45e-06 7.08e-06 1.14e-05 5.34e-06 3.17e-06 3.19e-06 4.95e-06 3.56e-06 1.76e-06 3.61e-05 3.46e-06 2.85e-07 2.18e-06 3.54e-06 3.85e-06 1.49e-06 1.53e-06
ENSG00000225721 AL592166.1 -776063 2.77e-07 1.5e-07 6.86e-08 2.35e-07 1.02e-07 8.63e-08 2.16e-07 5.78e-08 1.54e-07 9.72e-08 1.66e-07 1.23e-07 2.45e-07 8.15e-08 9.2e-08 7.74e-08 4.45e-08 1.64e-07 7.42e-08 6.73e-08 1.24e-07 1.42e-07 1.64e-07 4.15e-08 1.98e-07 1.26e-07 1.2e-07 1.17e-07 1.31e-07 1.17e-07 1.14e-07 7.6e-08 4.74e-08 9.5e-08 5.41e-08 4.95e-08 5.45e-08 6.2e-08 4.83e-08 8.2e-08 4.72e-08 1.48e-07 2.47e-08 1.98e-08 3.71e-08 8.94e-09 7.66e-08 1.13e-08 4.47e-08