Genes within 1Mb (chr1:43953874:T:C):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000117394 SLC2A1 994698 eQTL 3.40e-03 -0.119 0.0406 0.00184 0.0 0.112
ENSG00000117407 ARTN 20554 eQTL 5.39e-05 0.251 0.0618 0.0 0.0 0.112
ENSG00000117410 ATP6V0B -20613 eQTL 5.64e-03 0.0405 0.0146 0.0 0.0 0.112
ENSG00000126106 TMEM53 -720607 eQTL 2.57e-02 0.0916 0.041 0.00112 0.0 0.112
ENSG00000132768 DPH2 -16126 eQTL 1.77e-02 0.0481 0.0202 0.0 0.0 0.112
ENSG00000142949 PTPRF 428687 eQTL 1.55e-03 -0.138 0.0436 0.00831 0.0054 0.112
ENSG00000159214 CCDC24 -37485 eQTL 8.06e-11 0.362 0.0551 0.0 0.0 0.112
ENSG00000173846 PLK3 -846503 eQTL 3.15e-03 -0.0535 0.0181 0.00141 0.0 0.112
ENSG00000198198 SZT2 563992 eQTL 4.16e-02 0.0381 0.0187 0.0 0.0 0.112
ENSG00000225721 AL592166.1 -821936 eQTL 2.68e-02 -0.126 0.0568 0.0 0.0 0.112


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000117407 ARTN 20554 2.13e-05 2.32e-05 3.64e-06 1.21e-05 3.44e-06 9.46e-06 2.77e-05 3.39e-06 1.99e-05 9.71e-06 2.45e-05 9.95e-06 3.48e-05 8.97e-06 5.53e-06 1.11e-05 1.05e-05 1.66e-05 5.89e-06 4.45e-06 8.59e-06 2.16e-05 2.05e-05 5.67e-06 3.21e-05 5.34e-06 8.21e-06 8.05e-06 2.14e-05 1.88e-05 1.29e-05 1.33e-06 1.68e-06 4.93e-06 8.83e-06 4.16e-06 2.04e-06 2.71e-06 3.48e-06 2.5e-06 1.52e-06 2.62e-05 2.67e-06 2.96e-07 1.76e-06 2.75e-06 3.18e-06 1.23e-06 8.61e-07
ENSG00000117410 ATP6V0B -20613 2.13e-05 2.32e-05 3.64e-06 1.21e-05 3.44e-06 9.46e-06 2.75e-05 3.39e-06 1.99e-05 9.71e-06 2.45e-05 9.95e-06 3.45e-05 8.97e-06 5.5e-06 1.11e-05 1.05e-05 1.66e-05 5.89e-06 4.45e-06 8.57e-06 2.16e-05 2.02e-05 5.67e-06 3.2e-05 5.34e-06 8.21e-06 8.05e-06 2.12e-05 1.88e-05 1.29e-05 1.33e-06 1.68e-06 4.93e-06 8.83e-06 4.16e-06 2.02e-06 2.73e-06 3.48e-06 2.5e-06 1.52e-06 2.62e-05 2.67e-06 2.96e-07 1.7e-06 2.8e-06 3.18e-06 1.23e-06 8.61e-07
ENSG00000142949 PTPRF 428687 9.47e-07 8.47e-07 1.22e-07 3.81e-07 9.45e-08 2.42e-07 5.65e-07 1.37e-07 5.3e-07 2.72e-07 7.67e-07 3.62e-07 9.23e-07 1.6e-07 3.16e-07 2.14e-07 5.41e-07 4.24e-07 2.65e-07 1.8e-07 2.48e-07 4.14e-07 4.2e-07 1.76e-07 7.94e-07 2.54e-07 2.94e-07 2.68e-07 3.99e-07 7.39e-07 3.66e-07 3.67e-08 5.82e-08 1.75e-07 3.42e-07 1.66e-07 3.1e-07 1.53e-07 1.13e-07 3.01e-08 1.23e-07 5.87e-07 5.62e-08 6.51e-08 1.47e-07 1.33e-08 1.07e-07 3.09e-08 5.4e-08
ENSG00000159214 CCDC24 -37485 1.41e-05 1.6e-05 2.47e-06 8.64e-06 2.41e-06 6.21e-06 1.85e-05 2.14e-06 1.42e-05 6.58e-06 1.75e-05 7.15e-06 2.41e-05 5.14e-06 4.71e-06 8.14e-06 7.73e-06 1.13e-05 3.61e-06 3.14e-06 6.86e-06 1.36e-05 1.32e-05 3.73e-06 2.44e-05 4.65e-06 7.34e-06 5.4e-06 1.48e-05 1.32e-05 9.19e-06 9.85e-07 1.2e-06 3.73e-06 6.46e-06 2.82e-06 1.84e-06 2.03e-06 2.22e-06 1.5e-06 9.3e-07 1.85e-05 1.79e-06 2.66e-07 7.93e-07 2e-06 1.93e-06 7.87e-07 4.83e-07
ENSG00000225721 AL592166.1 -821936 2.76e-07 1.36e-07 5.03e-08 2.07e-07 9.25e-08 9.91e-08 1.61e-07 5.43e-08 1.45e-07 5.67e-08 1.55e-07 9e-08 1.53e-07 7.13e-08 5.98e-08 7.53e-08 4.24e-08 1.33e-07 6.32e-08 4.3e-08 1.25e-07 1.24e-07 1.5e-07 2.64e-08 1.5e-07 1.21e-07 1.07e-07 9.61e-08 1.16e-07 1e-07 1.06e-07 4.32e-08 3.13e-08 8.72e-08 5.99e-08 3.05e-08 4.62e-08 7.92e-08 6.62e-08 6.31e-08 5.05e-08 1.4e-07 3.2e-08 2e-08 3.41e-08 1.87e-08 1.21e-07 1.96e-09 4.94e-08
ENSG00000234093 \N -826841 2.67e-07 1.36e-07 5.03e-08 2.05e-07 9.25e-08 9.91e-08 1.61e-07 5.43e-08 1.45e-07 5.67e-08 1.55e-07 9e-08 1.52e-07 7.13e-08 5.98e-08 7.53e-08 4.24e-08 1.33e-07 6.32e-08 4.3e-08 1.25e-07 1.24e-07 1.5e-07 2.64e-08 1.46e-07 1.21e-07 1.07e-07 9.61e-08 1.16e-07 9.88e-08 1.06e-07 3.68e-08 3.13e-08 8.72e-08 5.99e-08 3.05e-08 4.54e-08 7.92e-08 6.62e-08 6.31e-08 5.33e-08 1.33e-07 3.2e-08 1.99e-08 3.41e-08 1.87e-08 1.18e-07 1.96e-09 4.94e-08