Genes within 1Mb (chr1:43707752:G:A):

View on , UCSC , GTEx , gnomAD


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066135 KDM4A 57603 eQTL 1.93e-03 -0.0563 0.0181 0.00207 0.00189 0.224
ENSG00000117407 ARTN -225568 eQTL 4.19e-08 0.251 0.0454 0.0 0.0 0.224
ENSG00000117408 IPO13 -239198 eQTL 2.87e-03 -0.0548 0.0183 0.0 0.0 0.224
ENSG00000117410 ATP6V0B -266735 eQTL 4.27e-16 -0.0867 0.0105 0.0 0.0 0.224
ENSG00000126091 ST3GAL3 1928 eQTL 3.70e-07 0.089 0.0174 0.00115 0.00211 0.224
ENSG00000142949 PTPRF 182565 pQTL 2.32e-02 0.0685 0.0301 0.0 0.0 0.227
ENSG00000142949 PTPRF 182565 eQTL 1.03e-04 0.126 0.0322 0.00184 0.00138 0.224
ENSG00000159479 MED8 317944 eQTL 1.62e-03 -0.0473 0.0149 0.0 0.0 0.224
ENSG00000178028 DMAP1 -505703 eQTL 9.46e-03 0.0609 0.0234 0.0 0.0 0.224
ENSG00000187147 RNF220 -697442 eQTL 4.09e-02 0.0274 0.0134 0.0 0.0 0.224
ENSG00000234694 AL139289.2 349094 eQTL 3.71e-02 -0.0991 0.0474 0.00109 0.0 0.224
ENSG00000236200 KDM4A-AS1 -386 eQTL 1.57e-02 0.108 0.0448 0.0 0.0 0.224
ENSG00000283580 AC098484.3 940446 eQTL 3.77e-02 -0.0678 0.0326 0.0 0.0 0.224


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066135 KDM4A 57603 5.12e-05 4.67e-05 7.87e-06 1.91e-05 8.66e-06 1.91e-05 5.89e-05 6.56e-06 4.62e-05 2.22e-05 5.76e-05 2.43e-05 6.99e-05 1.89e-05 1.03e-05 2.94e-05 2.62e-05 3.49e-05 1.12e-05 9.06e-06 2.32e-05 5.12e-05 4.11e-05 1.27e-05 6.14e-05 1.32e-05 1.99e-05 1.84e-05 4.34e-05 3.34e-05 2.9e-05 2.44e-06 4.39e-06 8.89e-06 1.47e-05 7.85e-06 4.33e-06 4.21e-06 6.98e-06 4.15e-06 1.94e-06 4.97e-05 4.93e-06 5.27e-07 3.38e-06 5.2e-06 5.31e-06 2.4e-06 1.51e-06
ENSG00000117407 ARTN -225568 2.78e-06 5.75e-06 6.82e-07 3.95e-06 1.72e-06 1.47e-06 4.08e-06 6.32e-07 5.18e-06 2.09e-06 7.41e-06 2.02e-06 7.58e-06 1.91e-06 1.27e-06 2.63e-06 2.24e-06 3.52e-06 1.44e-06 1.18e-06 3.15e-06 3.73e-06 3.51e-06 1.69e-06 4.53e-06 1.94e-06 1.57e-06 1.85e-06 3.87e-06 4.67e-06 2.73e-06 5.09e-07 5.45e-07 1.73e-06 2.22e-06 1.31e-06 1.07e-06 4.92e-07 1.23e-06 1.01e-06 3.56e-07 5.03e-06 4e-07 4.33e-07 6.81e-07 3.31e-07 6.93e-07 2.65e-07 4.54e-07
ENSG00000117410 ATP6V0B -266735 1.55e-06 4.24e-06 6.89e-07 3.1e-06 1.27e-06 8.09e-07 2.03e-06 3.97e-07 2.36e-06 8.44e-07 4.13e-06 1.28e-06 3.31e-06 1.24e-06 9.27e-07 1.53e-06 1.79e-06 2.16e-06 1.46e-06 7.6e-07 1.39e-06 2.26e-06 2.35e-06 9.61e-07 2.65e-06 1.26e-06 1e-06 1.78e-06 1.81e-06 3.08e-06 2.08e-06 3.42e-07 3.44e-07 1.26e-06 1.54e-06 8.52e-07 9.07e-07 4.1e-07 8.73e-07 7.73e-07 2.83e-07 3.33e-06 5.89e-07 3.62e-07 4.39e-07 3.36e-07 4.12e-07 8.18e-08 2e-07
ENSG00000126091 ST3GAL3 1928 0.000205 0.00024 4.72e-05 9.08e-05 6.18e-05 9.54e-05 0.000274 5.09e-05 0.000243 0.000144 0.000317 0.000139 0.000361 0.000118 6.85e-05 0.000197 0.000118 0.000187 7.46e-05 6.39e-05 0.000151 0.000265 0.000216 8.11e-05 0.000321 9.87e-05 0.000144 0.000117 0.000223 0.000123 0.000175 2.62e-05 3.19e-05 6.54e-05 6.12e-05 4.83e-05 3.05e-05 2.88e-05 5.08e-05 2.49e-05 2.11e-05 0.000282 2.89e-05 4.09e-06 3.21e-05 4.42e-05 3.79e-05 2.11e-05 1.46e-05
ENSG00000142949 PTPRF 182565 4.57e-06 9.42e-06 1.28e-06 6.69e-06 2.58e-06 2.6e-06 9.23e-06 1.07e-06 6.97e-06 4.22e-06 1.21e-05 2.99e-06 1.12e-05 2.99e-06 2.33e-06 4.64e-06 4.62e-06 4.1e-06 2.65e-06 1.5e-06 4.54e-06 6.41e-06 5.53e-06 1.91e-06 9.06e-06 3.77e-06 2.3e-06 3.14e-06 6.43e-06 7.98e-06 4.16e-06 5.77e-07 5.46e-07 2.39e-06 2.8e-06 2.66e-06 1.55e-06 8.97e-07 1.4e-06 2.11e-06 3.06e-07 8.15e-06 1.29e-06 4.31e-07 9.9e-07 1.07e-06 1.07e-06 5.83e-07 4.28e-07
ENSG00000178028 DMAP1 -505703 3.14e-07 3.55e-07 6.86e-08 3.66e-07 9.72e-08 1.26e-07 3.44e-07 5.2e-08 2.56e-07 9.35e-08 3.92e-07 1.15e-07 3.6e-07 8.44e-08 6.12e-08 1.01e-07 1.01e-07 3.04e-07 1.27e-07 5.61e-08 1.61e-07 1.76e-07 2.04e-07 2.83e-08 1.98e-07 2e-07 1.17e-07 1.46e-07 1.34e-07 3.52e-07 1.59e-07 3.6e-08 3.56e-08 9.52e-08 1.16e-07 4.95e-08 9.77e-08 6.98e-08 6.39e-08 8.85e-09 3.59e-08 2.15e-07 3.55e-08 1.59e-07 6.59e-08 1.55e-08 7.97e-08 4.04e-09 5.02e-08
ENSG00000198198 \N 317870 1.24e-06 2.43e-06 2.74e-07 2.05e-06 4.38e-07 6.3e-07 1.46e-06 2.21e-07 1.72e-06 5.11e-07 1.97e-06 5.83e-07 2.5e-06 2.89e-07 4.58e-07 9.78e-07 1.15e-06 1.21e-06 5.52e-07 6.4e-07 6.18e-07 1.63e-06 1.11e-06 6.51e-07 1.95e-06 8.72e-07 7.12e-07 8.69e-07 1.31e-06 1.64e-06 8.3e-07 2.57e-07 2.33e-07 6.24e-07 6.47e-07 6.32e-07 7.56e-07 2.87e-07 4.2e-07 4.18e-07 9.91e-08 1.68e-06 3.55e-07 2.8e-07 3.75e-07 1.34e-07 2.41e-07 1.24e-08 1.09e-07
ENSG00000234694 AL139289.2 349094 1.25e-06 1.4e-06 2.63e-07 1.44e-06 4.41e-07 4.79e-07 1.49e-06 1.09e-07 1.48e-06 3.82e-07 2.1e-06 5.39e-07 2e-06 2.67e-07 4.95e-07 7.41e-07 9.34e-07 8.55e-07 7.98e-07 4.68e-07 7.59e-07 9.67e-07 9.28e-07 4.55e-07 1.54e-06 5.53e-07 5.04e-07 7.01e-07 9.4e-07 1.27e-06 6.76e-07 7.24e-08 1.21e-07 5.39e-07 5.85e-07 4.3e-07 7.46e-07 1.58e-07 1.49e-07 3.97e-07 2.95e-08 1.57e-06 8.31e-08 2.52e-07 2.74e-07 5.38e-08 1.76e-07 0.0 5.55e-08
ENSG00000283580 AC098484.3 940446 2.6e-07 1.06e-07 3.44e-08 1.78e-07 9.02e-08 9.32e-08 1.39e-07 5.29e-08 1.42e-07 4.23e-08 1.63e-07 7.6e-08 1.27e-07 6.07e-08 4.89e-08 7.87e-08 5.1e-08 1.1e-07 5.2e-08 3.29e-08 1.05e-07 1.31e-07 1.29e-07 5.01e-08 1.33e-07 1.13e-07 1.11e-07 8.45e-08 1.03e-07 1.1e-07 9.75e-08 3.52e-08 2.74e-08 8.26e-08 9.27e-08 4.12e-08 4.85e-08 8.91e-08 8.14e-08 3.55e-08 4.02e-08 1.39e-07 4.36e-08 1.74e-07 9.21e-08 1.78e-08 1.34e-07 4.82e-09 4.61e-08