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Genes within 1Mb (chr1:42720440:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000065978 YBX1 38022 sc-eQTL 6.28e-01 -0.082 0.169 0.05 CD4_CTL L2
ENSG00000066135 KDM4A -929709 sc-eQTL 3.39e-01 -0.208 0.217 0.05 CD4_CTL L2
ENSG00000066322 ELOVL1 -647634 sc-eQTL 2.26e-01 0.246 0.203 0.05 CD4_CTL L2
ENSG00000117385 P3H1 -46644 sc-eQTL 4.01e-01 0.168 0.2 0.05 CD4_CTL L2
ENSG00000117394 SLC2A1 -238428 sc-eQTL 3.77e-01 -0.18 0.203 0.05 CD4_CTL L2
ENSG00000117395 EBNA1BP2 -550496 sc-eQTL 3.93e-01 -0.19 0.222 0.05 CD4_CTL L2
ENSG00000126091 ST3GAL3 -985384 sc-eQTL 2.43e-01 -0.254 0.217 0.05 CD4_CTL L2
ENSG00000127124 HIVEP3 684515 sc-eQTL 6.53e-01 0.0767 0.17 0.05 CD4_CTL L2
ENSG00000127125 PPCS 264323 sc-eQTL 2.36e-02 0.44 0.193 0.05 CD4_CTL L2
ENSG00000159479 MED8 -669368 sc-eQTL 3.71e-01 0.185 0.206 0.05 CD4_CTL L2
ENSG00000164008 C1orf50 -46809 sc-eQTL 1.87e-01 0.29 0.219 0.05 CD4_CTL L2
ENSG00000164010 ERMAP -96682 sc-eQTL 4.91e-01 -0.133 0.193 0.05 CD4_CTL L2
ENSG00000164011 ZNF691 -126133 sc-eQTL 1.77e-01 -0.247 0.182 0.05 CD4_CTL L2
ENSG00000171960 PPIH 62017 sc-eQTL 2.79e-01 0.204 0.188 0.05 CD4_CTL L2
ENSG00000177868 SVBP -96957 sc-eQTL 6.78e-01 0.0909 0.219 0.05 CD4_CTL L2
ENSG00000178922 HYI -733549 sc-eQTL 4.73e-01 -0.137 0.191 0.05 CD4_CTL L2
ENSG00000186409 CCDC30 257219 sc-eQTL 5.94e-01 0.0911 0.171 0.05 CD4_CTL L2
ENSG00000198198 SZT2 -669442 sc-eQTL 5.21e-01 0.132 0.206 0.05 CD4_CTL L2
ENSG00000198815 FOXJ3 384563 sc-eQTL 7.95e-01 -0.0539 0.207 0.05 CD4_CTL L2
ENSG00000065978 YBX1 38022 sc-eQTL 7.44e-01 0.0582 0.178 0.05 CD8_TEM L2
ENSG00000066135 KDM4A -929709 sc-eQTL 9.23e-01 -0.0205 0.212 0.05 CD8_TEM L2
ENSG00000066322 ELOVL1 -647634 sc-eQTL 2.71e-01 0.218 0.197 0.05 CD8_TEM L2
ENSG00000117385 P3H1 -46644 sc-eQTL 7.96e-01 -0.0564 0.218 0.05 CD8_TEM L2
ENSG00000117394 SLC2A1 -238428 sc-eQTL 7.28e-01 -0.0751 0.216 0.05 CD8_TEM L2
ENSG00000117395 EBNA1BP2 -550496 sc-eQTL 7.06e-01 -0.0768 0.203 0.05 CD8_TEM L2
ENSG00000126091 ST3GAL3 -985384 sc-eQTL 7.77e-01 -0.0575 0.203 0.05 CD8_TEM L2
ENSG00000127124 HIVEP3 684515 sc-eQTL 6.58e-01 0.091 0.205 0.05 CD8_TEM L2
ENSG00000127125 PPCS 264323 sc-eQTL 1.06e-01 -0.324 0.2 0.05 CD8_TEM L2
ENSG00000159479 MED8 -669368 sc-eQTL 2.44e-01 -0.232 0.199 0.05 CD8_TEM L2
ENSG00000164008 C1orf50 -46809 sc-eQTL 1.60e-01 -0.297 0.211 0.05 CD8_TEM L2
ENSG00000164010 ERMAP -96682 sc-eQTL 8.93e-01 0.0262 0.195 0.05 CD8_TEM L2
ENSG00000164011 ZNF691 -126133 sc-eQTL 6.71e-01 -0.0786 0.185 0.05 CD8_TEM L2
ENSG00000171960 PPIH 62017 sc-eQTL 5.13e-01 0.141 0.214 0.05 CD8_TEM L2
ENSG00000177868 SVBP -96957 sc-eQTL 9.01e-01 0.025 0.202 0.05 CD8_TEM L2
ENSG00000178922 HYI -733549 sc-eQTL 9.94e-01 0.00141 0.202 0.05 CD8_TEM L2
ENSG00000186409 CCDC30 257219 sc-eQTL 9.80e-01 0.00446 0.18 0.05 CD8_TEM L2
ENSG00000198198 SZT2 -669442 sc-eQTL 5.04e-01 -0.14 0.21 0.05 CD8_TEM L2
ENSG00000198815 FOXJ3 384563 sc-eQTL 2.58e-01 0.227 0.2 0.05 CD8_TEM L2
ENSG00000065978 YBX1 38022 sc-eQTL 2.86e-01 0.211 0.197 0.055 gdT L2
ENSG00000066135 KDM4A -929709 sc-eQTL 3.63e-01 -0.231 0.253 0.055 gdT L2
ENSG00000066322 ELOVL1 -647634 sc-eQTL 5.91e-02 -0.469 0.246 0.055 gdT L2
ENSG00000117385 P3H1 -46644 sc-eQTL 1.75e-01 -0.31 0.227 0.055 gdT L2
ENSG00000117394 SLC2A1 -238428 sc-eQTL 5.11e-01 -0.141 0.214 0.055 gdT L2
ENSG00000117395 EBNA1BP2 -550496 sc-eQTL 8.41e-01 0.0503 0.251 0.055 gdT L2
ENSG00000117399 CDC20 -638541 sc-eQTL 4.40e-01 0.131 0.169 0.055 gdT L2
ENSG00000126091 ST3GAL3 -985384 sc-eQTL 6.46e-01 0.11 0.239 0.055 gdT L2
ENSG00000127124 HIVEP3 684515 sc-eQTL 5.72e-01 0.13 0.229 0.055 gdT L2
ENSG00000127125 PPCS 264323 sc-eQTL 4.74e-02 0.475 0.238 0.055 gdT L2
ENSG00000159479 MED8 -669368 sc-eQTL 1.37e-01 -0.352 0.235 0.055 gdT L2
ENSG00000164008 C1orf50 -46809 sc-eQTL 4.96e-01 -0.16 0.235 0.055 gdT L2
ENSG00000164010 ERMAP -96682 sc-eQTL 7.33e-01 -0.0749 0.219 0.055 gdT L2
ENSG00000164011 ZNF691 -126133 sc-eQTL 5.82e-04 -0.681 0.194 0.055 gdT L2
ENSG00000171960 PPIH 62017 sc-eQTL 7.84e-01 -0.0617 0.225 0.055 gdT L2
ENSG00000177868 SVBP -96957 sc-eQTL 2.27e-01 0.292 0.24 0.055 gdT L2
ENSG00000178922 HYI -733549 sc-eQTL 5.25e-01 0.157 0.246 0.055 gdT L2
ENSG00000198198 SZT2 -669442 sc-eQTL 5.55e-01 -0.133 0.225 0.055 gdT L2
ENSG00000198815 FOXJ3 384563 sc-eQTL 8.64e-01 0.039 0.227 0.055 gdT L2
ENSG00000065978 YBX1 38022 sc-eQTL 5.76e-01 -0.0866 0.154 0.054 pDC L2
ENSG00000066135 KDM4A -929709 sc-eQTL 7.22e-01 0.0795 0.223 0.054 pDC L2
ENSG00000066322 ELOVL1 -647634 sc-eQTL 5.61e-01 -0.133 0.229 0.054 pDC L2
ENSG00000117385 P3H1 -46644 sc-eQTL 5.71e-02 -0.472 0.246 0.054 pDC L2
ENSG00000117394 SLC2A1 -238428 sc-eQTL 1.19e-01 -0.248 0.158 0.054 pDC L2
ENSG00000117395 EBNA1BP2 -550496 sc-eQTL 9.86e-01 0.00414 0.229 0.054 pDC L2
ENSG00000126091 ST3GAL3 -985384 sc-eQTL 5.54e-01 0.129 0.217 0.054 pDC L2
ENSG00000127124 HIVEP3 684515 sc-eQTL 2.44e-01 -0.27 0.231 0.054 pDC L2
ENSG00000127125 PPCS 264323 sc-eQTL 1.47e-02 0.537 0.218 0.054 pDC L2
ENSG00000159479 MED8 -669368 sc-eQTL 9.99e-01 -0.000338 0.202 0.054 pDC L2
ENSG00000164008 C1orf50 -46809 sc-eQTL 8.12e-01 0.0561 0.236 0.054 pDC L2
ENSG00000164010 ERMAP -96682 sc-eQTL 6.59e-01 -0.0979 0.221 0.054 pDC L2
ENSG00000164011 ZNF691 -126133 sc-eQTL 7.51e-01 -0.0594 0.187 0.054 pDC L2
ENSG00000171960 PPIH 62017 sc-eQTL 8.69e-01 -0.0366 0.222 0.054 pDC L2
ENSG00000177868 SVBP -96957 sc-eQTL 3.01e-01 0.237 0.229 0.054 pDC L2
ENSG00000178922 HYI -733549 sc-eQTL 7.18e-02 -0.323 0.178 0.054 pDC L2
ENSG00000186409 CCDC30 257219 sc-eQTL 1.02e-01 0.318 0.193 0.054 pDC L2
ENSG00000198198 SZT2 -669442 sc-eQTL 1.36e-01 -0.335 0.223 0.054 pDC L2
ENSG00000198815 FOXJ3 384563 sc-eQTL 9.62e-01 0.0123 0.255 0.054 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000127125 PPCS 264323 eQTL 0.0131 -0.109 0.0437 0.0 0.0 0.0343
ENSG00000159479 MED8 -669368 eQTL 0.00393 0.105 0.0365 0.0 0.0 0.0343
ENSG00000177868 SVBP -96957 eQTL 0.024 0.128 0.0564 0.00363 0.0 0.0343
ENSG00000186409 CCDC30 257110 eQTL 3.27e-05 -0.189 0.0452 0.0 0.0 0.0343
ENSG00000229431 AL139289.1 -664673 eQTL 0.00217 0.33 0.107 0.00234 0.0 0.0343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000066056 \N -580542 3.27e-07 1.76e-07 6.72e-08 2.26e-07 1.08e-07 7.75e-08 2.74e-07 6.12e-08 1.86e-07 1.11e-07 2.04e-07 1.48e-07 2.55e-07 8.44e-08 6.53e-08 9.48e-08 5.73e-08 2.15e-07 7.11e-08 6.58e-08 1.27e-07 1.89e-07 1.73e-07 4.27e-08 2.48e-07 1.65e-07 1.25e-07 1.42e-07 1.44e-07 1.38e-07 1.35e-07 4.51e-08 4.74e-08 9.3e-08 5.16e-08 3.36e-08 4.84e-08 7.25e-08 5.78e-08 8.2e-08 3.6e-08 1.62e-07 3.35e-08 1.14e-08 5.32e-08 6.83e-09 7.8e-08 0.0 4.55e-08
ENSG00000066135 \N -929709 2.69e-07 1.25e-07 4.69e-08 1.84e-07 9.25e-08 9.65e-08 1.49e-07 5.2e-08 1.44e-07 4.94e-08 1.57e-07 8.55e-08 1.41e-07 6.56e-08 6.02e-08 7.3e-08 3.87e-08 1.26e-07 5.82e-08 4.1e-08 1.13e-07 1.28e-07 1.39e-07 3.42e-08 1.4e-07 1.14e-07 1.07e-07 9.65e-08 1.12e-07 1.07e-07 9.7e-08 3.66e-08 3.61e-08 8.68e-08 8.76e-08 3.6e-08 5.08e-08 9.25e-08 6.54e-08 3.92e-08 5e-08 1.33e-07 4.7e-08 1.55e-08 4.25e-08 1.99e-08 1.22e-07 3.8e-09 4.88e-08
ENSG00000229431 AL139289.1 -664673 3.02e-07 1.53e-07 6.28e-08 2.15e-07 9.94e-08 8.21e-08 2.1e-07 5.85e-08 1.54e-07 8.53e-08 1.61e-07 1.2e-07 1.95e-07 8.13e-08 5.36e-08 7.98e-08 4.31e-08 1.72e-07 7.16e-08 5.48e-08 1.22e-07 1.42e-07 1.58e-07 3.4e-08 2.02e-07 1.31e-07 1.19e-07 1.1e-07 1.32e-07 1.06e-07 1.14e-07 3.68e-08 3.56e-08 9.3e-08 3.02e-08 2.74e-08 4.41e-08 8.51e-08 6.39e-08 6.31e-08 4.42e-08 1.52e-07 5.39e-08 1.43e-08 3.3e-08 1.71e-08 8.67e-08 2e-09 4.94e-08